mRNA_L-elsbetiae_contig7620.16543.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7620.16543.1
Unique NamemRNA_L-elsbetiae_contig7620.16543.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7620.16543.1 vs. uniprot
Match: A0A6H5K3H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H5_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 3.430e-24
Identity = 46/86 (53.49%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:   10 QVRALLENVEVKGGVLDCCGATNDAVRTVLTANGLRVATNDLDSRLIADTHLDAATNTFVDAYSEDSRRPNWVVSSPSYKNAFGIL 267
            +V ALL NV++ GGVLD CG+ +DA++ VL A+ L V+TND + RL ADTHLDA +  F   +S + +RP+W+V+SP Y NAF IL
Sbjct:   14 KVDALLLNVKLAGGVLDACGSASDAIKVVLEAHSLNVSTNDFNPRLTADTHLDATSEEFTAMFSTEGQRPDWIVTSPPYGNAFSIL 99
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BLAST of mRNA_L-elsbetiae_contig7620.16543.1 vs. uniprot
Match: A0A6H5KD58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD58_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.590e-12
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:   13 VRALLENVEVKGGVLDCCGATNDAVRTVLTANGLRVATNDLDSRLIADTHLDAATNTFVDAY--SEDSRRPNWVVSSPSYKNAFGILK 270
            V ALL  V + G +LD CG   DAV T L      V TND+ S   ADT+LDA+  +F D +  +   +RP+WVV+SPSYK+A   +K
Sbjct:  103 VEALLGAVSITGCILDVCGGPTDAVATRLGPT-CEVLTNDVSSGRPADTNLDASLESFPDDFFAASSGKRPDWVVTSPSYKSALTFVK 189
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7620.16543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K3H5_9PHAE3.430e-2453.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD58_9PHAE3.590e-1245.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7620contigL-elsbetiae_contig7620:3531..3977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size275
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816846.9990606-CDS-L-elsbetiae_contig7620:3530..36601622816846.9990606-CDS-L-elsbetiae_contig7620:3530..3660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7620 3531..3660 -
1691683858.1534624-CDS-L-elsbetiae_contig7620:3530..36601691683858.1534624-CDS-L-elsbetiae_contig7620:3530..3660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7620 3531..3660 -
1622816847.0148785-CDS-L-elsbetiae_contig7620:3834..39771622816847.0148785-CDS-L-elsbetiae_contig7620:3834..3977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7620 3835..3977 -
1691683858.164487-CDS-L-elsbetiae_contig7620:3834..39771691683858.164487-CDS-L-elsbetiae_contig7620:3834..3977Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7620 3835..3977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7620.16543.1prot_L-elsbetiae_contig7620.16543.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7620 3531..3977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7620.16543.1

>prot_L-elsbetiae_contig7620.16543.1 ID=prot_L-elsbetiae_contig7620.16543.1|Name=mRNA_L-elsbetiae_contig7620.16543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
MRFQVRALLENVEVKGGVLDCCGATNDAVRTVLTANGLRVATNDLDSRLI
ADTHLDAATNTFVDAYSEDSRRPNWVVSSPSYKNAFGILKQ
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mRNA from alignment at L-elsbetiae_contig7620:3531..3977-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7620.16543.1 ID=mRNA_L-elsbetiae_contig7620.16543.1|Name=mRNA_L-elsbetiae_contig7620.16543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=447bp|location=Sequence derived from alignment at L-elsbetiae_contig7620:3531..3977- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGATTTCAGGTGCGAGCTCTCCTGGAAAACGTGGAGGTGAAAGGCGG
CGTGCTAGACTGCTGTGGCGCCACCAACGACGCAGTCAGAACGGTGCTGA
CAGCAAACGGTCTCCGTGTTGCAACAAACGACTTAGATTCCAGGTACAAA
TTGTGTGTCCGGATCTTCGAATCCTTGTGGCAGGTCGGTGTGCTGGCACA
AACACTGCTGGGAACCTCGAGCTCGTGTATGGAATACCTGCCGTCCTGAT
GCCATTCTATTTCATACTTCGTCAAAGCTTAGAAGCATCGCTTTTTTATT
TTATTCTCGACCCTCAGGTTAATCGCTGACACACACCTGGACGCCGCGAC
AAACACTTTTGTCGACGCCTACTCGGAGGACTCGCGTCGTCCTAACTGGG
TCGTATCTAGCCCGTCGTACAAGAATGCCTTCGGGATTTTGAAGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7620:3531..3977-

>mRNA_L-elsbetiae_contig7620.16543.1 ID=mRNA_L-elsbetiae_contig7620.16543.1|Name=mRNA_L-elsbetiae_contig7620.16543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig7620:3531..3977- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGATTTCAGGTGCGAGCTCTCCTGGAAAACGTGGAGGTGAAAGGCGG
CGTGCTAGACTGCTGTGGCGCCACCAACGACGCAGTCAGAACGGTGCTGA
CAGCAAACGGTCTCCGTGTTGCAACAAACGACTTAGATTCCAGATGCGAT
TTCAGGTGCGAGCTCTCCTGGAAAACGTGGAGGTGAAAGGCGGCGTGCTA
GACTGCTGTGGCGCCACCAACGACGCAGTCAGAACGGTGCTGACAGCAAA
CGGTCTCCGTGTTGCAACAAACGACTTAGATTCCAGGTTAATCGCTGACA
CACACCTGGACGCCGCGACAAACACTTTTGTCGACGCCTACTCGGAGGAC
TCGCGTCGTCCTAACTGGGTCGTATCTAGCCCGTCGTACAAGAATGCCTT
CGGGATTTTGAAGCAGGTTAATCGCTGACACACACCTGGACGCCGCGACA
AACACTTTTGTCGACGCCTACTCGGAGGACTCGCGTCGTCCTAACTGGGT
CGTATCTAGCCCGTCGTACAAGAATGCCTTCGGGATTTTGAAGCAG
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