mRNA_L-elsbetiae_contig7587.16492.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7587.16492.1
Unique NamemRNA_L-elsbetiae_contig7587.16492.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7587.16492.1 vs. uniprot
Match: D8LKX2_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX2_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.630e-16
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 LLKVLEAMGQKPTEEELFQMISEVDDNMSGSIDFPEFLKVL 123
            L +VLEAMGQKPTEEELFQMISEVDDNMSGSIDFPEFLKV+
Sbjct:   59 LRQVLEAMGQKPTEEELFQMISEVDDNMSGSIDFPEFLKVI 99
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BLAST of mRNA_L-elsbetiae_contig7587.16492.1 vs. uniprot
Match: A0A7R9Z009_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z009_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 7.300e-16
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 LLKVLEAMGQKPTEEELFQMISEVDDNMSGSIDFPEFLKVL 123
            L +VLEAMGQKPTEEELFQMISEVDDNMSGSIDF EFLKV+
Sbjct:   35 LRQVLEAMGQKPTEEELFQMISEVDDNMSGSIDFGEFLKVI 75
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BLAST of mRNA_L-elsbetiae_contig7587.16492.1 vs. uniprot
Match: A0A835Z187_9STRA (EF hand-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z187_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.400e-15
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 LLKVLEAMGQKPTEEELFQMISEVDDNMSGSIDFPEFLKVL 123
            L +VLEAMGQKPTEEELFQMISEVDDNMSGSIDF EFLKV+
Sbjct:   31 LRQVLEAMGQKPTEEELFQMISEVDDNMSGSIDFSEFLKVI 71
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BLAST of mRNA_L-elsbetiae_contig7587.16492.1 vs. uniprot
Match: A0A7S1CKF1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CKF1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.960e-15
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 LLKVLEAMGQKPTEEELFQMISEVDDNMSGSIDFPEFLKVL 123
            L +VLEAMGQKPTEEELFQMISEVDDNMSGSIDF EFLKV+
Sbjct:   75 LRQVLEAMGQKPTEEELFQMISEVDDNMSGSIDFGEFLKVI 115
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BLAST of mRNA_L-elsbetiae_contig7587.16492.1 vs. uniprot
Match: A0A812KW91_SYMMI (Calmodulin n=6 Tax=cellular organisms TaxID=131567 RepID=A0A812KW91_SYMMI)

HSP 1 Score: 72.8 bits (177), Expect = 5.600e-15
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 LLKVLEAMGQKPTEEELFQMISEVDDNMSGSIDFPEFLKVL 123
            L +VLEAMGQKPTEEELFQMISEVD+NMSGSIDF EFLKV+
Sbjct:   31 LRQVLEAMGQKPTEEELFQMISEVDENMSGSIDFAEFLKVI 71
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BLAST of mRNA_L-elsbetiae_contig7587.16492.1 vs. uniprot
Match: A0A6U4JW26_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JW26_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.990e-15
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 LLKVLEAMGQKPTEEELFQMISEVDDNMSGSIDFPEFLKVL 123
            L +VLEAMGQKPTEEELFQMISEVD+NMSGSIDF EFLKV+
Sbjct:   78 LRQVLEAMGQKPTEEELFQMISEVDENMSGSIDFAEFLKVI 118
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BLAST of mRNA_L-elsbetiae_contig7587.16492.1 vs. uniprot
Match: K0TLU5_THAOC (EF-hand domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLU5_THAOC)

HSP 1 Score: 70.5 bits (171), Expect = 8.510e-15
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 LLKVLEAMGQKPTEEELFQMISEVDDNMSGSIDFPEFLKVL 123
            +L+VLEAMGQ PTE+ELF+MISEVDDNMSGSIDF EFLKV+
Sbjct:    1 MLQVLEAMGQAPTEDELFEMISEVDDNMSGSIDFGEFLKVV 41
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BLAST of mRNA_L-elsbetiae_contig7587.16492.1 vs. uniprot
Match: A0A7S1XYK3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XYK3_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.460e-14
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 LLKVLEAMGQKPTEEELFQMISEVDDNMSGSIDFPEFLKVL 123
            L +VLEAMGQKPTEEELFQMISEVD+NMSGSIDF EFLKV+
Sbjct:   78 LRQVLEAMGQKPTEEELFQMISEVDENMSGSIDFAEFLKVI 118
[Close]
BLAST of mRNA_L-elsbetiae_contig7587.16492.1 vs. uniprot
Match: A0A7S2GY36_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GY36_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.580e-14
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 LLKVLEAMGQKPTEEELFQMISEVDDNMSGSIDFPEFLKVL 123
            L +VLEAMGQKPTEEELFQMISEVDDNMSGSIDF EFL V+
Sbjct:   31 LRQVLEAMGQKPTEEELFQMISEVDDNMSGSIDFAEFLLVI 71
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BLAST of mRNA_L-elsbetiae_contig7587.16492.1 vs. uniprot
Match: A0A8J2SH02_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SH02_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.770e-14
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 LLKVLEAMGQKPTEEELFQMISEVDDNMSGSIDFPEFLKVL 123
            L +VLEAMGQKPTEEELFQMISEVD+NMSGSIDF EFLKV+
Sbjct:   89 LRQVLEAMGQKPTEEELFQMISEVDENMSGSIDFAEFLKVI 129
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7587.16492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKX2_ECTSI1.630e-1692.68Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7R9Z009_9STRA7.300e-1690.24Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A835Z187_9STRA1.400e-1590.24EF hand-containing protein n=1 Tax=Tribonema minus... [more]
A0A7S1CKF1_9STRA4.960e-1590.24Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A812KW91_SYMMI5.600e-1587.80Calmodulin n=6 Tax=cellular organisms TaxID=131567... [more]
A0A6U4JW26_9STRA6.990e-1587.80Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
K0TLU5_THAOC8.510e-1582.93EF-hand domain-containing protein n=1 Tax=Thalassi... [more]
A0A7S1XYK3_9STRA1.460e-1487.80Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2GY36_9STRA1.580e-1487.80Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A8J2SH02_9STRA1.770e-1487.80Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7587contigL-elsbetiae_contig7587:1347..1499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue2.3e-10
Seed eggNOG ortholog2880.D8LKX2
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Exons1
Model size153
Cds size132
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.7698534-CDS-L-elsbetiae_contig7587:1346..14781622816842.7698534-CDS-L-elsbetiae_contig7587:1346..1478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7587 1347..1478 -
1691683855.1749737-CDS-L-elsbetiae_contig7587:1346..14781691683855.1749737-CDS-L-elsbetiae_contig7587:1346..1478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7587 1347..1478 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816842.7826707-UTR-L-elsbetiae_contig7587:1478..14991622816842.7826707-UTR-L-elsbetiae_contig7587:1478..1499Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7587 1479..1499 -
1691683855.1919043-UTR-L-elsbetiae_contig7587:1478..14991691683855.1919043-UTR-L-elsbetiae_contig7587:1478..1499Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7587 1479..1499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7587.16492.1prot_L-elsbetiae_contig7587.16492.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7587 1347..1478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7587.16492.1

>prot_L-elsbetiae_contig7587.16492.1 ID=prot_L-elsbetiae_contig7587.16492.1|Name=mRNA_L-elsbetiae_contig7587.16492.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=44bp
MGQKPTEEELFQMISEVDDNMSGSIDFPEFLKVLFLGSDAFLC*
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mRNA from alignment at L-elsbetiae_contig7587:1347..1499-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7587.16492.1 ID=mRNA_L-elsbetiae_contig7587.16492.1|Name=mRNA_L-elsbetiae_contig7587.16492.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=153bp|location=Sequence derived from alignment at L-elsbetiae_contig7587:1347..1499- (Laminarionema elsbetiae ELsaHSoW15)
CTTCTCAAGGTGTTGGAGGCGATGGGCCAAAAACCAACCGAGGAGGAACT
ATTCCAGATGATAAGCGAGGTCGACGACAACATGTCCGGTTCCATCGACT
TCCCAGAATTTTTAAAGGTGCTATTTTTGGGAAGCGACGCTTTTTTGTGT
TGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7587:1347..1499-

>mRNA_L-elsbetiae_contig7587.16492.1 ID=mRNA_L-elsbetiae_contig7587.16492.1|Name=mRNA_L-elsbetiae_contig7587.16492.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=264bp|location=Sequence derived from alignment at L-elsbetiae_contig7587:1347..1499- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCCAAAAACCAACCGAGGAGGAACTATTCCAGATGATAAGCGAGGT
CGACGACAACATGTCCGGTTCCATCGACTTCCCAGAATTTTTAAAGGTGC
TATTTTTGGGAAGCGACGCTTTTTTGTGTTGAATGGGCCAAAAACCAACC
GAGGAGGAACTATTCCAGATGATAAGCGAGGTCGACGACAACATGTCCGG
TTCCATCGACTTCCCAGAATTTTTAAAGGTGCTATTTTTGGGAAGCGACG
CTTTTTTGTGTTGA
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