mRNA_L-elsbetiae_contig7479.16367.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7479.16367.1
Unique NamemRNA_L-elsbetiae_contig7479.16367.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7479.16367.1 vs. uniprot
Match: D8LGT8_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT8_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 2.010e-32
Identity = 82/155 (52.90%), Postives = 100/155 (64.52%), Query Frame = 2 
Query:   41 LLLVIPLLLQSGGAWVLPIPSLRLYSQLTRSGEPQKLAVPFKHPARGKGRLTAALDGDLPTGGSATDDGDRGVNMVKARLSKPMGLVLAEKEIGMPGLVVDDMTEGGSAKECGVVQPGMELVSAGGVNCGELVFDQVVELLQNSPAEEPIDFVFS 505
            LLL++ LL+Q   AW+LP  S            P + A     PA     +T A  G L  G +  D      ++V+ARLSKP+GL+LAEKEIG PGL VDDM EGGSA+E GVV  GM LV+A GV+CGEL+FDQVVE+LQN+P E PIDFVFS
Sbjct:    4 LLLLMALLVQVRQAWILPASS------------PLRAAPRSNTPA-----VTVA--GSLGKGDAGMDS-----SVVRARLSKPIGLMLAEKEIGKPGLRVDDMVEGGSAEESGVVLRGMTLVAACGVDCGELMFDQVVEMLQNTPPEAPIDFVFS 134
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BLAST of mRNA_L-elsbetiae_contig7479.16367.1 vs. uniprot
Match: A0A6H5K4R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R0_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.980e-11
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 2 
Query:  368 KECGVVQPGMELVSAGGVNCGELVFDQVVELLQNSPAEEPIDFVFSV 508
            KE GVV  GM LV+A GV+CGEL FDQV+E+LQN+P E PIDFVFS+
Sbjct:    5 KESGVVLRGMTLVAACGVDCGELTFDQVLEMLQNTPPEAPIDFVFSI 51
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BLAST of mRNA_L-elsbetiae_contig7479.16367.1 vs. uniprot
Match: A0A6H5L670_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L670_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.560e-8
Identity = 43/104 (41.35%), Postives = 56/104 (53.85%), Query Frame = 2 
Query:   59 LLLQSGGAWVLPIPSLRLYSQLTRSGEPQKLAVPFKHPARGKGRLTAALDGDLPTGGSATDDGDRGVNMVKARLSKPMGLVLAEKEIGMPGLVVDDMTEGGSAK 370
            LL+Q   AW++P      +S L  +     LAV               + G L  G +  D      ++V+ARLSKP+GL+LAEKEIG PGL VDDM EGGSA+
Sbjct:    3 LLVQVRQAWIVPA-----WSPLLAAPRSNALAV--------------TVAGSLGEGDAGMDS-----SVVRARLSKPIGLMLAEKEIGKPGLRVDDMVEGGSAE 82
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BLAST of mRNA_L-elsbetiae_contig7479.16367.1 vs. uniprot
Match: A0A7S3B9S6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B9S6_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 3.810e-5
Identity = 50/144 (34.72%), Postives = 72/144 (50.00%), Query Frame = 2 
Query:   50 VIPLLLQSGGAWVLPIPSLRLYSQLTRSGEPQKLAVPFKHPARGKGRLTAALDGDLPTGGSATDDGDRGVNMVKARLSKPMGLVLAEKEIGMPGLVVDDMTEGGSAKECGVVQPGMELVSAGGVNCGELVFDQVVELLQNSPAE 481
            V+  L  + GAW    P++RL       G+P   A+     AR    +TA    ++P    A  D  R    V  +LSKP+G VL E   G  G+ V+D+ EGGSA E G+++ G  L+S  G +     FD V+E+L  +P E
Sbjct:   12 VVACLCTAAGAWT---PAVRL------PGKPLTNALRVPRCAR----ITA----EVPIKSDADFDYFRRQRQVAVKLSKPLGAVLEECSPG--GVRVEDLQEGGSAFETGLLKKGDRLLSILGKDVSASDFDSVMEMLVAAPTE 136
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7479.16367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LGT8_ECTSI2.010e-3252.90PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K4R0_9PHAE2.980e-1170.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L670_9PHAE2.560e-841.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3B9S6_9EUKA3.810e-534.72Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7479contigL-elsbetiae_contig7479:6409..8399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue8.7e-07
Seed eggNOG ortholog2880.D8LDD4
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Domain present in PSD-95, Dlg, and ZO-1/2.
EggNOG OGs2DJ3Z@1,2S5ZV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-28_001160.1
Exons2
Model size1031
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7479.16367.1prot_L-elsbetiae_contig7479.16367.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7479 6443..7897 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.6676652-UTR-L-elsbetiae_contig7479:6408..64421622816831.6676652-UTR-L-elsbetiae_contig7479:6408..6442Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7479 6409..6442 +
1691683846.7878397-UTR-L-elsbetiae_contig7479:6408..64421691683846.7878397-UTR-L-elsbetiae_contig7479:6408..6442Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7479 6409..6442 +
1622816831.7037709-UTR-L-elsbetiae_contig7479:7897..83991622816831.7037709-UTR-L-elsbetiae_contig7479:7897..8399Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7479 7898..8399 +
1691683846.820218-UTR-L-elsbetiae_contig7479:7897..83991691683846.820218-UTR-L-elsbetiae_contig7479:7897..8399Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7479 7898..8399 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.6784081-CDS-L-elsbetiae_contig7479:6442..67781622816831.6784081-CDS-L-elsbetiae_contig7479:6442..6778Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7479 6443..6778 +
1691683846.8019223-CDS-L-elsbetiae_contig7479:6442..67781691683846.8019223-CDS-L-elsbetiae_contig7479:6442..6778Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7479 6443..6778 +
1622816831.690992-CDS-L-elsbetiae_contig7479:7738..78971622816831.690992-CDS-L-elsbetiae_contig7479:7738..7897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7479 7739..7897 +
1691683846.8108582-CDS-L-elsbetiae_contig7479:7738..78971691683846.8108582-CDS-L-elsbetiae_contig7479:7738..7897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7479 7739..7897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7479.16367.1

>prot_L-elsbetiae_contig7479.16367.1 ID=prot_L-elsbetiae_contig7479.16367.1|Name=mRNA_L-elsbetiae_contig7479.16367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
MRLLLVIPLLLQSGGAWVLPIPSLRLYSQLTRSGEPQKLAVPFKHPARGK
GRLTAALDGDLPTGGSATDDGDRGVNMVKARLSKPMGLVLAEKEIGMPGL
VVDDMTEGGSAKECGVVQPGMELVSAGGVNCGELVFDQVVELLQNSPAEE
PIDFVFSVAVPGPP*
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mRNA from alignment at L-elsbetiae_contig7479:6409..8399+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7479.16367.1 ID=mRNA_L-elsbetiae_contig7479.16367.1|Name=mRNA_L-elsbetiae_contig7479.16367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1991bp|location=Sequence derived from alignment at L-elsbetiae_contig7479:6409..8399+ (Laminarionema elsbetiae ELsaHSoW15)
GTTTGCCACCCCGCTGGAGCAACATCGCTTCGACATGCGCCTATTGTTGG
TGATACCGCTTCTGTTGCAGAGCGGTGGGGCCTGGGTTTTGCCCATTCCT
TCTCTGAGACTCTACTCGCAGCTAACGAGAAGCGGCGAGCCACAGAAACT
GGCGGTACCCTTCAAGCACCCAGCAAGGGGCAAGGGGAGGCTCACAGCAG
CTTTAGACGGTGATCTTCCAACCGGGGGATCAGCGACCGACGATGGAGAT
AGAGGAGTGAACATGGTCAAGGCGCGACTGAGCAAGCCCATGGGCCTTGT
GCTCGCTGAGAAGGAAATAGGGATGCCTGGTTTGGTCGTGGACGACATGA
CTGAAGGAGGGAGCGCAAAGGTGATGACATGGGCAGCAGCGTTTACATAC
TCCACCATGGTGTTCGGGGCTTGTATCTTGAGATACATTTCATGGATATC
CTCCAACAGGGTTGTGTGGTGTCAATGTCTTATTTTTTAAGTGGTGGACA
ACGTACTTGAAGTTCCGGGGTTCCGGGGTAGGCTGCTCGTTCCGAATTCT
TCTTCTGAAATTACCAAAACAAAAAGAGACACGCGTTTGGCACCGCAATT
GATATGGGGATCGGGACCCGTTCCCCATTTTCTTGAAGGAGATCACCTTG
GCTATCTTCGCATGCCTGCTGTTTTGGCTGGTTCGCCGGGCGTGTGTGCT
TTTGTTCGTTCAGCAAAACCTGACCACAGGTTGACAGAAAATCAGGCATT
TTGAGACGGTTTGAAAACACGAAGTCCTCCAGATCGAGAGCTGCTGTGCA
CCGCTCCTGCTGTGCTGCGACTATGTTCCCCCCAAAGGTTTAATAAGGGG
TGCTCAGTCGAAGACCTCGTTTTCAAAGGTCTCGGACGTGCCCTCACTTT
TGCCGATACACGAAAATGTAGTTTGCTCGGTATACAGACTTGGATTCGTT
CAGCCGACCGCCCCGCATATTTTGCTCTCTGCTCTGCTACATACCAACAG
TAAGAGCTACCTCACGACAGCCAACCCTAAGACTTGGACCGAGACATTAT
GCCCTCGGTTTTTGTTTCAAAGCATAAAAGTCGAGTTTGCAGTGAGAGAG
AGCAGCTCGAGTGAGAGAGACCAACGGCATTTTCTGTGGGAGACGACAGA
AAAACACCACTACCAGTCTACTGTGTCAATATAAGTCGCTTTCGGCTCTC
TCTTGGAATCCCTACCCGGAATTTCAAACCTGGGAAACGCGGTCCAGCCT
TAACTTTGGCACCGTCCTACGGGTGAACCTACACTAACATGATGTTTGCT
GACTGGATGTGCTGGCCTTTTCATTTTCAGGAATGCGGCGTTGTCCAGCC
AGGAATGGAGCTAGTGTCCGCCGGTGGCGTGAACTGCGGTGAGCTGGTTT
TCGACCAGGTGGTGGAGCTGCTACAAAATTCTCCGGCAGAGGAACCGATC
GATTTCGTGTTCTCCGTGGCAGTGCCCGGGCCACCATGATGACTTAGATA
TTATTCGGTTCTTTGTGGAGAACGCGGAAAATGTATCTAAATACATACAT
AGATATGTGGTGTTCGCCGTGATGACGAAGCGCCCACAGAGTGCGGTAGC
AGCATAGCCGGAGCCATTTCTCTTGAACCCACGCACCAATGTATGTAATG
CAGGCACTGTTTTCGCTGGCCGGCCTGGAGTAGAGAGGGTTGACTGTGGC
GCTCGTTGCCGGATGATGTCGTTGCCAAGGATCTTCCGACACAGCTCTGT
TCGATCTCAGATTATGATGCTGTTGCCACACGCCACGGTTGCTTTTCTTT
ACACGCTGGAAGGGTTGCGCTCTTGAACGCAGTACTTTCCCGGCCAACCA
TCTCGAACGAGGTAATTGCCCCATTTTGAACGTCTCGTGCAGAGAGAGGA
AAAAGGTTGCGGTGATAAGAGGGGGGTGGTGTGACGCATGACGGTATACC
AGTGACTGTAGGTGCGCGCACCGATCGATCCGGCGCCAGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7479:6409..8399+

>mRNA_L-elsbetiae_contig7479.16367.1 ID=mRNA_L-elsbetiae_contig7479.16367.1|Name=mRNA_L-elsbetiae_contig7479.16367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig7479:6409..8399+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCCTATTGTTGGTGATACCGCTTCTGTTGCAGAGCGGTGGGGCCTG
GGTTTTGCCCATTCCTTCTCTGAGACTCTACTCGCAGCTAACGAGAAGCG
GCGAGCCACAGAAACTGGCGGTACCCTTCAAGCACCCAGCAAGGGGCAAG
GGGAGGCTCACAGCAGCTTTAGACGGTGATCTTCCAACCGGGGGATCAGC
GACCGACGATGGAGATAGAGGAGTGAACATGGTCAAGGCGCGACTGAGCA
AGCCCATGGGCCTTGTGCTCGCTGAGAAGGAAATAGGGATGCCTGGTTTG
GTCGTGGACGACATGACTGAAGGAGGGAGCGCAAAGATGCGCCTATTGTT
GGTGATACCGCTTCTGTTGCAGAGCGGTGGGGCCTGGGTTTTGCCCATTC
CTTCTCTGAGACTCTACTCGCAGCTAACGAGAAGCGGCGAGCCACAGAAA
CTGGCGGTACCCTTCAAGCACCCAGCAAGGGGCAAGGGGAGGCTCACAGC
AGCTTTAGACGGTGATCTTCCAACCGGGGGATCAGCGACCGACGATGGAG
ATAGAGGAGTGAACATGGTCAAGGCGCGACTGAGCAAGCCCATGGGCCTT
GTGCTCGCTGAGAAGGAAATAGGGATGCCTGGTTTGGTCGTGGACGACAT
GACTGAAGGAGGGAGCGCAAAGGAATGCGGCGTTGTCCAGCCAGGAATGG
AGCTAGTGTCCGCCGGTGGCGTGAACTGCGGTGAGCTGGTTTTCGACCAG
GTGGTGGAGCTGCTACAAAATTCTCCGGCAGAGGAACCGATCGATTTCGT
GTTCTCCGTGGCAGTGCCCGGGCCACCATGAGAATGCGGCGTTGTCCAGC
CAGGAATGGAGCTAGTGTCCGCCGGTGGCGTGAACTGCGGTGAGCTGGTT
TTCGACCAGGTGGTGGAGCTGCTACAAAATTCTCCGGCAGAGGAACCGAT
CGATTTCGTGTTCTCCGTGGCAGTGCCCGGGCCACCATGA
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