prot_L-elsbetiae_contig7479.16367.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7479.16367.1
Unique Nameprot_L-elsbetiae_contig7479.16367.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length165
Homology
BLAST of mRNA_L-elsbetiae_contig7479.16367.1 vs. uniprot
Match: D8LGT8_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT8_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 3.640e-34
Identity = 82/155 (52.90%), Postives = 100/155 (64.52%), Query Frame = 0
Query:    3 LLLVIPLLLQSGGAWVLPIPSLRLYSQLTRSGEPQKLAVPFKHPARGKGRLTAALDGDLPTGGSATDDGDRGVNMVKARLSKPMGLVLAEKEIGMPGLVVDDMTEGGSAKECGVVQPGMELVSAGGVNCGELVFDQVVELLQNSPAEEPIDFVFS 157
            LLL++ LL+Q   AW+LP  S            P + A     PA     +T A  G L  G +  D      ++V+ARLSKP+GL+LAEKEIG PGL VDDM EGGSA+E GVV  GM LV+A GV+CGEL+FDQVVE+LQN+P E PIDFVFS
Sbjct:    4 LLLLMALLVQVRQAWILPASS------------PLRAAPRSNTPA-----VTVA--GSLGKGDAGMDS-----SVVRARLSKPIGLMLAEKEIGKPGLRVDDMVEGGSAEESGVVLRGMTLVAACGVDCGELMFDQVVEMLQNTPPEAPIDFVFS 134          
BLAST of mRNA_L-elsbetiae_contig7479.16367.1 vs. uniprot
Match: A0A6H5K4R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R0_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.940e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 0
Query:  112 KECGVVQPGMELVSAGGVNCGELVFDQVVELLQNSPAEEPIDFVFSV 158
            KE GVV  GM LV+A GV+CGEL FDQV+E+LQN+P E PIDFVFS+
Sbjct:    5 KESGVVLRGMTLVAACGVDCGELTFDQVLEMLQNTPPEAPIDFVFSI 51          
BLAST of mRNA_L-elsbetiae_contig7479.16367.1 vs. uniprot
Match: A0A6H5L670_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L670_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.670e-9
Identity = 43/104 (41.35%), Postives = 56/104 (53.85%), Query Frame = 0
Query:    9 LLLQSGGAWVLPIPSLRLYSQLTRSGEPQKLAVPFKHPARGKGRLTAALDGDLPTGGSATDDGDRGVNMVKARLSKPMGLVLAEKEIGMPGLVVDDMTEGGSAK 112
            LL+Q   AW++P      +S L  +     LAV               + G L  G +  D      ++V+ARLSKP+GL+LAEKEIG PGL VDDM EGGSA+
Sbjct:    3 LLVQVRQAWIVPA-----WSPLLAAPRSNALAV--------------TVAGSLGEGDAGMDS-----SVVRARLSKPIGLMLAEKEIGKPGLRVDDMVEGGSAE 82          
BLAST of mRNA_L-elsbetiae_contig7479.16367.1 vs. uniprot
Match: A0A7S3B9S6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B9S6_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 7.890e-6
Identity = 50/144 (34.72%), Postives = 72/144 (50.00%), Query Frame = 0
Query:    6 VIPLLLQSGGAWVLPIPSLRLYSQLTRSGEPQKLAVPFKHPARGKGRLTAALDGDLPTGGSATDDGDRGVNMVKARLSKPMGLVLAEKEIGMPGLVVDDMTEGGSAKECGVVQPGMELVSAGGVNCGELVFDQVVELLQNSPAE 149
            V+  L  + GAW    P++RL       G+P   A+     AR    +TA    ++P    A  D  R    V  +LSKP+G VL E   G  G+ V+D+ EGGSA E G+++ G  L+S  G +     FD V+E+L  +P E
Sbjct:   12 VVACLCTAAGAWT---PAVRL------PGKPLTNALRVPRCAR----ITA----EVPIKSDADFDYFRRQRQVAVKLSKPLGAVLEECSPG--GVRVEDLQEGGSAFETGLLKKGDRLLSILGKDVSASDFDSVMEMLVAAPTE 136          
BLAST of mRNA_L-elsbetiae_contig7479.16367.1 vs. uniprot
Match: A0A7S2EUD9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EUD9_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 5.470e-5
Identity = 26/71 (36.62%), Postives = 46/71 (64.79%), Query Frame = 0
Query:   82 LSKPMGLVLAEKEIGMPGLVVDDMTEGGSAKECGVVQPGMELVSAGGVNCGELVFDQVVELLQNSPAEEPI 152
            L+KP+G+VL E++    G+VV  + +GG+A + GV+ PG  L+  G  +     FD V++LL ++P++ P+
Sbjct:   89 LTKPLGIVLEERDEEGNGVVVKTLADGGAAADSGVIVPGDVLLKIGTKDVSTAGFDDVMDLLISAPSDAPV 159          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7479.16367.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LGT8_ECTSI3.640e-3452.90PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K4R0_9PHAE3.940e-1270.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L670_9PHAE2.670e-941.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3B9S6_9EUKA7.890e-634.72Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S2EUD9_9STRA5.470e-536.62Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 84..160
e-value: 9.6E-5
score: 31.8
IPR001478PDZ domainPROSITEPS50106PDZcoord: 74..149
score: 9.732
NoneNo IPR availableGENE3D2.30.42.10coord: 71..159
e-value: 1.1E-9
score: 40.0
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..164
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..16
score: 0.771
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 70..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7479contigL-elsbetiae_contig7479:6443..7897 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7479.16367.1mRNA_L-elsbetiae_contig7479.16367.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7479 6409..8399 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7479.16367.1 ID=prot_L-elsbetiae_contig7479.16367.1|Name=mRNA_L-elsbetiae_contig7479.16367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
MRLLLVIPLLLQSGGAWVLPIPSLRLYSQLTRSGEPQKLAVPFKHPARGK
GRLTAALDGDLPTGGSATDDGDRGVNMVKARLSKPMGLVLAEKEIGMPGL
VVDDMTEGGSAKECGVVQPGMELVSAGGVNCGELVFDQVVELLQNSPAEE
PIDFVFSVAVPGPP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR036034PDZ_sf