mRNA_L-elsbetiae_contig747.16358.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig747.16358.1
Unique NamemRNA_L-elsbetiae_contig747.16358.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig747.16358.1 vs. uniprot
Match: D7G122_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G122_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 3.940e-65
Identity = 99/142 (69.72%), Postives = 115/142 (80.99%), Query Frame = 1
Query:  142 SALQDARKTTTVYQWSNVYDTRASSDGGCDPYGCTPALTRDQNWDATSRWSCSEKLDNSQCKITYQFEEPQDIVRLNIKFYKGNERVRTLKVRGSGGFEKTITSSGTSGXXXKFDVNTDETSWLSMEGQNLKSTDWISITEV 567
            +AL DARK TTV +W+N YD R S  GGCDP GC  +LTRDQ+W   SRWSCSEKL+++QCKITY+FEEPQDIVR+ IKFYKG+ERVRTLK++GS GFEKTITSSGTS     +D+NTDET WLSME  NL   +WISITEV
Sbjct:    2 TALVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFEKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEV 143          
BLAST of mRNA_L-elsbetiae_contig747.16358.1 vs. uniprot
Match: A0A6H5L4E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E8_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 5.820e-40
Identity = 79/141 (56.03%), Postives = 93/141 (65.96%), Query Frame = 1
Query:  145 ALQDARKTTTVYQWSNVYDTRASSDGGCDPYGCTPALTRDQNWDATSRWSCSEKLDNSQCKITYQFEEPQDIVRLNIKFYKGNERVRTLKVRGSGGFEKTITSSGTSGXXXKFDVNTDETSWLSMEGQNLKSTDWISITEV 567
            AL DARK T V +W+N YD R S  GGCDP GC  + TRD++W   SRWSCSEKL+++QC ITY FEEPQDIVR+ I                +G F+K ITSSGTS     +D+NTDET WLSME  NL   +WISITEV
Sbjct:  607 ALVDARKRTAVKKWANAYDDRTSEYGGCDPDGCKASFTRDRSWKDESRWSCSEKLEDAQCNITYNFEEPQDIVRIKI----------------NGEFKKIITSSGTSSTYETWDINTDETKWLSMEALNLDDDEWISITEV 731          
BLAST of mRNA_L-elsbetiae_contig747.16358.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.830e-18
Identity = 53/154 (34.42%), Postives = 78/154 (50.65%), Query Frame = 1
Query:  103 IFALISAAALGTSSALQDARKTTTVYQWSNVYDTRASSDGGCDPYGCTPALTRDQNWDATSRWSCSEKLDNSQCKITYQFEEPQDIVRLNIKFYKGNERVRTLKVRGSGGFEKTITSSGTSGXXXKFDVNTDETSWLSMEGQNLKSTDWISITE 564
            +  ++ AA +GT +A  D            +YDTR     GCDP GCT ALTRD +    SRWSC+ KL    C I+Y      ++ +L ++ Y+G+ R RT+ V   G    T TSSGT+      D++      +++ G N   + W+SI E
Sbjct:  179 VLDVVEAAEMGTVTATAD------------LYDTRLGDTVGCDPEGCTAALTRDGDMSEGSRWSCAPKL-GGPCSISYDLGAEYNVEQLRLRMYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGSNQADSQWLSIIE 319          
BLAST of mRNA_L-elsbetiae_contig747.16358.1 vs. uniprot
Match: D7FL48_ECTSI (Leucine rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.950e-16
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  172 TVYQWSNVYDTRASSDGGCDPYGCTPALTRDQNWDATSRWSCSEKLDNSQCKITYQFEEPQDIVRLNIKFYKGNERVRTLKVRGSGGFEKTITSSGTSGXXXKFDVNTDETSWLSMEGQNLKSTDWISITE 564
            TV   +++YD R     GCDP GCT ALTRD +    SRWSC+ +L    C I+Y       I  L +  Y+G+ RVRT+ V   G    T TSSGT+      D++      +++ G  L  ++W+SI E
Sbjct:  187 TVTATADLYDDRLGDTVGCDPEGCTAALTRDGDMSEDSRWSCAPEL-GGLCSISYDLGAEYSIDELQLAMYQGDTRVRTVGVAVDGDLVTTWTSSGTTSGFESVDMSGATGQVVTITGAELSDSEWLSIVE 316          
BLAST of mRNA_L-elsbetiae_contig747.16358.1 vs. uniprot
Match: A0A6H5JFX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX1_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.760e-15
Identity = 50/125 (40.00%), Postives = 69/125 (55.20%), Query Frame = 1
Query:  205 RASSDGGCDPYGCTPALTRDQ-NWDATSRWSCSEKL--DNSQCKITYQFEEPQDIVRLNIKFYKGNERVRTLKVRGSGGFEKTITSSGTSGXXXK-FDVNTDETSWLSMEGQNLKSTDWISITEV 567
            +AS D GC  YGC P L  D    D  SRWSC+E +  D  QC+I + F  PQ++ +L + F+KG ER RTLKV+ +G  EK        G     FDV   +   +++E   L + +WIS+ EV
Sbjct:  213 QASGDHGCGKYGCLPVLATDGITDDVESRWSCAEDIVPDGGQCEIEFTFSHPQNLKQLQVDFWKGEERTRTLKVKING--EKFGEFDSHPGSVTSYFDVIAYDVHTVTLESLGLDTDEWISLLEV 335          
BLAST of mRNA_L-elsbetiae_contig747.16358.1 vs. uniprot
Match: A0A6H5J8U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8U9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 5.660e-15
Identity = 53/148 (35.81%), Postives = 78/148 (52.70%), Query Frame = 1
Query:  154 DARKTTTVYQWSNVYDTR---ASSDGGCDPYGCTPALTRDQ--NWDATSRWSCSEKL--DNSQCKITYQFEEPQDIVRLNIKFYKGNERVRTLKVRGSG---GFEKTITSSGTSGXXXKFDVNTDETSWLSMEGQNLKSTDWISITEV 567
            +A   TTV   +  YD R   ++ D GC   GC P L  D     D  SRWSC+E++  D  QC+I++ F+ PQDI  + + F+KG+ER RTLKV+ +G   G  ++   S        F +  +    ++ME   +   DWIS+ EV
Sbjct:  253 EAGSKTTVGVTATAYDDRPGESAGDVGCGEMGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEISFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGS----TFNSFGIQENGVHTVTMESVGIDRDDWISLLEV 396          
BLAST of mRNA_L-elsbetiae_contig747.16358.1 vs. uniprot
Match: D7FI77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI77_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 3.250e-14
Identity = 53/134 (39.55%), Postives = 70/134 (52.24%), Query Frame = 1
Query:  193 VYDTR---ASSDGGCDPYG---CTPALTRDQNW-DATSRWSCSEKL--DNSQCKITYQFEEPQDIVRLNIKFYKGNERVRTLKVRGSGGFEKTITSSGTSGXXXKFDVNTDETSWLSMEGQNLKSTDWISITEV 567
             +DTR   +S D GC   G   CT   TRD  + +  SRWSC+ KL  D   C+I + F EPQ IV + + F+KGN+R RTL V  +G    T  S  T        V  +E S + +E   L S +WIS+ EV
Sbjct:   35 AHDTRPGNSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVPDEGPCQIEFTFAEPQHIVDIQVAFWKGNDRTRTLGVHVNGELTHTHESY-TDSTFNTLGVTANEASTVMLESTALLSDEWISLIEV 167          
BLAST of mRNA_L-elsbetiae_contig747.16358.1 vs. uniprot
Match: D8LCQ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ5_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 7.210e-14
Identity = 44/117 (37.61%), Postives = 65/117 (55.56%), Query Frame = 1
Query:  238 GCTPALTRDQ--NWDATSRWSCSEKL--DNSQCKITYQFEEPQDIVRLNIKFYKGNERVRTLKVRGSG---GFEKTITSSGTSGXXXKFDVNTDETSWLSMEGQNLKSTDWISITEV 567
            GC P L  D     D  SRWSC+E++  D  QC+IT+ F+ PQDI  + + F+KG+ER RTLKV+ +G   G  ++   S        F +  +    ++ME   + + DWIS+ EV
Sbjct:    2 GCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGS----TFNSFGIQENGVHTVAMESVGIDADDWISLLEV 114          
BLAST of mRNA_L-elsbetiae_contig747.16358.1 vs. uniprot
Match: D7G3F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F6_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 8.770e-14
Identity = 54/134 (40.30%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  193 VYDTR---ASSDGGCDPYG---CTPALTRDQ-NWDATSRWSCSEKL--DNSQCKITYQFEEPQDIVRLNIKFYKGNERVRTLKVRGSGGFEKTITSSGTSGXXXKFDVNTDETSWLSMEGQNLKSTDWISITEV 567
             +DTR   +S D GC   G   CTPA TRD  + +A SRWSC+ K+      C+I Y F EPQDI  + + F+KG+ERVRTL+V   G   +T  S   S       V+    S + +E  +L   +WIS+ EV
Sbjct:   87 AHDTRPGSSSGDVGCGEAGGNGCTPANTRDGISNEAESRWSCASKIVPGGGPCQIEYVFGEPQDIEDIQVAFWKGDERVRTLEVYFDGTLYRTHESYAGS-TFNPLGVSATGISSVMLESVDLLENEWISLIEV 219          
BLAST of mRNA_L-elsbetiae_contig747.16358.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 1.070e-12
Identity = 52/133 (39.10%), Postives = 69/133 (51.88%), Query Frame = 1
Query:  187 SNVYDTRASSDGGCDPYG---CTPALTRDQNW-DATSRWSCSEKL--DNSQCKITYQFEEPQDIVRLNIKFYKGNERVRTLKVRGSGGFEKTITSSGTSGXXXKFDVNTDETSWLSMEGQNLKSTDWISITEV 567
            S  +D R   DG C   G   CT A TRD  + +  SRWSC+ KL  D   C+I + F EPQ IV + + F+KGNER RTL+V  +G    T  S   +       V   + S + +E   L S +WIS+ EV
Sbjct:  101 STAHDVRPGDDG-CGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADA-TFNTLGVTATDVSTVMLESVALLSDEWISLIEV 231          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig747.16358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7G122_ECTSI3.940e-6569.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4E8_9PHAE5.820e-4056.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1V3_9PHAE4.830e-1834.42F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
D7FL48_ECTSI1.950e-1637.40Leucine rich repeat carbohydrate binding protein n... [more]
A0A6H5JFX1_9PHAE2.760e-1540.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5J8U9_9PHAE5.660e-1535.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI77_ECTSI3.250e-1439.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCQ5_ECTSI7.210e-1437.61Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G3F6_ECTSI8.770e-1440.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5F4_ECTSI1.070e-1239.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig747contigL-elsbetiae_contig747:24464..25666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue6.3e-17
Seed eggNOG ortholog2880.D7G2Y6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_002200.1
Exons2
Model size568
Cds size567
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.0669703-CDS-L-elsbetiae_contig747:24463..246081622816831.0669703-CDS-L-elsbetiae_contig747:24463..24608Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig747 24464..24608 +
1691683846.3518443-CDS-L-elsbetiae_contig747:24463..246081691683846.3518443-CDS-L-elsbetiae_contig747:24463..24608Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig747 24464..24608 +
1622816831.0798-CDS-L-elsbetiae_contig747:25244..256661622816831.0798-CDS-L-elsbetiae_contig747:25244..25666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig747 25245..25666 +
1691683846.3639123-CDS-L-elsbetiae_contig747:25244..256661691683846.3639123-CDS-L-elsbetiae_contig747:25244..25666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig747 25245..25666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig747.16358.1prot_L-elsbetiae_contig747.16358.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig747 24464..25666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig747.16358.1

>prot_L-elsbetiae_contig747.16358.1 ID=prot_L-elsbetiae_contig747.16358.1|Name=mRNA_L-elsbetiae_contig747.16358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=189bp
LTPLLPPLVNIIQYHPSHLSHIIFHTSTNMRSFGIFALISAAALGTSSAL
QDARKTTTVYQWSNVYDTRASSDGGCDPYGCTPALTRDQNWDATSRWSCS
EKLDNSQCKITYQFEEPQDIVRLNIKFYKGNERVRTLKVRGSGGFEKTIT
SSGTSGGYEKFDVNTDETSWLSMEGQNLKSTDWISITEV
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mRNA from alignment at L-elsbetiae_contig747:24464..25666+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig747.16358.1 ID=mRNA_L-elsbetiae_contig747.16358.1|Name=mRNA_L-elsbetiae_contig747.16358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1203bp|location=Sequence derived from alignment at L-elsbetiae_contig747:24464..25666+ (Laminarionema elsbetiae ELsaHSoW15)
CTCACTCCGCTACTTCCTCCTCTGGTCAATATCATCCAATACCACCCTTC ACACTTAAGCCACATCATCTTCCACACCAGTACCAACATGCGCTCTTTCG GGATCTTCGCCCTGATCTCGGCCGCCGCGCTCGGCACCTCTTCTGGTGAG ACATGTGCCACGATGATTTTCTTTGAAGTCCTTTACCCCGGAATGATTTT TGATGCCGCGGCGTAGCTGTGCAAGCAAGTGAACATGCCCACCTAGCCTT GACTGTGTTGTACAGCTGCTGTCAACAAGAAACGTTGTGTCGACTACATG AAGTGAGTGCGTGTCACGTGGCAATCAATCCAGAATGTTGTTCATGCTAC AACCAATGGTGTGTGATATCAAGTTCGAACCCCTATTTGTCGTTCGTGTG GTTACATGGATGGGCTCTTGACGGGCTTTGTGAATGCTTCCTATCCAACA ATCGGATGCGTACACATCTCACGCTTGCTTGCGCGGGACGCCATGCGGAT CTCTAAGCGTAGCCTCAATCGTCGACACATGCAGCCGTCTACATAATCTA CAACCCAGGTCTCTCGTTATTTCAAAACTACACGTTGGGCCGGTCGGGTC GTCCTACAAAAATCTCTGCAACAGCAACACGCGCGTCCAACCGTCTCATT GACCTCGTGGATAGCCCGTGGCGTCCTGAATCATCTCCTGTCTGCCTGCT TGCTGTACAGTACCCCCCTCAAATCCCGCACCCTCTTGCTGCTGCCCCTC ACCTGCAATGCAATGAACACTACTTACACAGCTCTCCAAGACGCGCGCAA AACGACCACCGTCTACCAGTGGTCCAACGTCTACGACACCAGGGCTTCGT CCGACGGGGGATGCGATCCTTACGGCTGCACCCCTGCCCTCACGCGCGAC CAGAACTGGGACGCCACCTCCAGGTGGTCTTGCAGCGAGAAACTCGACAA CTCCCAGTGCAAGATCACCTACCAGTTCGAAGAGCCCCAGGACATCGTCC GCCTCAACATCAAGTTCTACAAGGGGAACGAGCGCGTCCGTACTCTCAAA GTCCGGGGCAGCGGCGGGTTCGAGAAGACCATCACCTCCAGCGGCACCTC GGGAGGCTACGAGAAGTTCGACGTCAACACTGATGAGACCTCATGGTTGA GCATGGAGGGCCAGAACCTCAAGAGCACTGACTGGATCAGCATCACCGAG GTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig747:24464..25666+

>mRNA_L-elsbetiae_contig747.16358.1 ID=mRNA_L-elsbetiae_contig747.16358.1|Name=mRNA_L-elsbetiae_contig747.16358.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1134bp|location=Sequence derived from alignment at L-elsbetiae_contig747:24464..25666+ (Laminarionema elsbetiae ELsaHSoW15)
CTCACTCCGCTACTTCCTCCTCTGGTCAATATCATCCAATACCACCCTTC
ACACTTAAGCCACATCATCTTCCACACCAGTACCAACATGCGCTCTTTCG
GGATCTTCGCCCTGATCTCGGCCGCCGCGCTCGGCACCTCTTCTGCTCAC
TCCGCTACTTCCTCCTCTGGTCAATATCATCCAATACCACCCTTCACACT
TAAGCCACATCATCTTCCACACCAGTACCAACATGCGCTCTTTCGGGATC
TTCGCCCTGATCTCGGCCGCCGCGCTCGGCACCTCTTCTGCTCTCCAAGA
CGCGCGCAAAACGACCACCGTCTACCAGTGGTCCAACGTCTACGACACCA
GGGCTTCGTCCGACGGGGGATGCGATCCTTACGGCTGCACCCCTGCCCTC
ACGCGCGACCAGAACTGGGACGCCACCTCCAGGTGGTCTTGCAGCGAGAA
ACTCGACAACTCCCAGTGCAAGATCACCTACCAGTTCGAAGAGCCCCAGG
ACATCGTCCGCCTCAACATCAAGTTCTACAAGGGGAACGAGCGCGTCCGT
ACTCTCAAAGTCCGGGGCAGCGGCGGGTTCGAGAAGACCATCACCTCCAG
CGGCACCTCGGGAGGCTACGAGAAGTTCGACGTCAACACTGATGAGACCT
CATGGTTGAGCATGGAGGGCCAGAACCTCAAGAGCACTGACTGGATCAGC
ATCACCGAGGTACTCTCCAAGACGCGCGCAAAACGACCACCGTCTACCAG
TGGTCCAACGTCTACGACACCAGGGCTTCGTCCGACGGGGGATGCGATCC
TTACGGCTGCACCCCTGCCCTCACGCGCGACCAGAACTGGGACGCCACCT
CCAGGTGGTCTTGCAGCGAGAAACTCGACAACTCCCAGTGCAAGATCACC
TACCAGTTCGAAGAGCCCCAGGACATCGTCCGCCTCAACATCAAGTTCTA
CAAGGGGAACGAGCGCGTCCGTACTCTCAAAGTCCGGGGCAGCGGCGGGT
TCGAGAAGACCATCACCTCCAGCGGCACCTCGGGAGGCTACGAGAAGTTC
GACGTCAACACTGATGAGACCTCATGGTTGAGCATGGAGGGCCAGAACCT
CAAGAGCACTGACTGGATCAGCATCACCGAGGTA
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