mRNA_L-elsbetiae_contig747.16357.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig747.16357.1
Unique NamemRNA_L-elsbetiae_contig747.16357.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig747.16357.1 vs. uniprot
Match: D8LFA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFA3_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.020e-42
Identity = 68/102 (66.67%), Postives = 89/102 (87.25%), Query Frame = 3
Query:   21 LPRFRLDFIEQESEDYDEKRMCKTCKHTVLMTGVICPCSDVSVWCLRCAEKACGCPIDKKYLLSWWTEDEMSVFLQTAQEYLLKLANGQADEAAIASFKANI 326
            LPRFRL +I++++E+YDE+R+CK CKHT+ MTGV CPCSDV V CLRCAE++C CP+  KYLLSWWTED+++ F++TA+ YL KLA+GQA+ AAIASF+ANI
Sbjct:  799 LPRFRLGYIDKDTEEYDERRVCKNCKHTLFMTGVACPCSDVDVSCLRCAEESCDCPVAGKYLLSWWTEDDLNRFVRTAETYLRKLADGQANAAAIASFRANI 900          
BLAST of mRNA_L-elsbetiae_contig747.16357.1 vs. uniprot
Match: A0A7S4IRT4_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IRT4_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 9.200e-21
Identity = 44/110 (40.00%), Postives = 66/110 (60.00%), Query Frame = 3
Query:   18 GLPRFRLDFIEQESEDYDEKRMCKTCKHTVLMTGVICPCSDVSVWCLRCAEKACGCPIDKKYLLSWWTEDEMSVFLQTAQEYLLKLANGQADEAAIASFKANIKACYNRD 347
             LPR RLD +++ES DYD+KR+C  CKH    + V C CS   V CLR +   C CP ++KY++ W TEDEM+  L+T + +  +L     D+A   S +++  A  ++D
Sbjct:  396 NLPRNRLDQLDEESADYDDKRLCHACKHVCFFSCVACECSQTKVSCLRHSHYMCRCPTERKYMMIWSTEDEMNTILRTVKNFAEELKLTANDDAPDKSAQSSSNAKADKD 505          
BLAST of mRNA_L-elsbetiae_contig747.16357.1 vs. uniprot
Match: A0A7S2ESI0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ESI0_TRICV)

HSP 1 Score: 87.8 bits (216), Expect = 1.630e-17
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 3
Query:   18 GLPRFRLDFIEQESEDYDEKRMCKTCKHTVLMTGVICPCSDVSVWCLRCAEKACGCPIDKKYLLSWWTEDEMSVFLQTAQEYLLKLANGQADE 296
             LPR RLD +++ES DYD+KR+C  CKH    + V C CS   V CLR +   C CP ++KY++ W TE EM+  L+T + +   L  GQ+ E
Sbjct:  497 NLPRNRLDKLDEESADYDDKRLCHACKHVCFFSCVACECSQSKVSCLRHSHYMCRCPTERKYMMIWSTEAEMNGTLETVRNFA-SLLLGQSKE 588          
BLAST of mRNA_L-elsbetiae_contig747.16357.1 vs. uniprot
Match: A0A7R9WKL4_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WKL4_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.010e-17
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   18 GLPRFRLDFIEQESEDYDEKRMCKTCKHTVLMTGVICPCSDVSVWCLRCAEKACGCPIDKKYLLSWWTEDEMSVFLQTAQEYL--LKLANGQADEAAIAS 311
             LP+ RLD +++ES DYD+KR+C  CKH    + V C CS   V CLR +   C CP ++KY++ W +EDEM+  L+  + +   LK +  +A +  + S
Sbjct:  470 SLPKNRLDQLDEESADYDDKRLCHACKHVCFFSCVACECSQTKVSCLRHSHYMCRCPTERKYIMIWSSEDEMNTTLRKVKSFAEELKSSVDRASDNLVTS 569          
BLAST of mRNA_L-elsbetiae_contig747.16357.1 vs. uniprot
Match: A0A6U3NYJ8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NYJ8_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.160e-16
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 3
Query:   21 LPRFRLDFIEQESEDYDEKRMCKTCKHTVLMTGVICPCSDVSVWCLRCAEKACGCPIDKKYLLSWWTEDEMSVFLQTAQEYLLKLANGQADEAAIAS 311
            LP  RLD ++++S DYD+KR+C  CKH    + V C CS   V CLR +   C CP ++KY++ W +E EM   L+  + +  KL   ++    + S
Sbjct:  130 LPNNRLDQLDEQSADYDDKRLCHACKHVCFFSSVACECSQSKVSCLRHSHYMCRCPTERKYIMIWSSEREMLTTLERGKRHFKKLEESESVNTDVES 226          
BLAST of mRNA_L-elsbetiae_contig747.16357.1 vs. uniprot
Match: K0RUL2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RUL2_THAOC)

HSP 1 Score: 85.1 bits (209), Expect = 1.420e-16
Identity = 37/104 (35.58%), Postives = 60/104 (57.69%), Query Frame = 3
Query:   21 LPRFRLDFIEQESEDYDEKRMCKTCKHTVLMTGVICPCSDVSVWCLRCAEKACGCPIDKKYLLSWWTEDEMSVFLQTAQEYLLKLANGQADEAAIASFKANIKA 332
            LP  RLD ++ ES DYD+KR+C +CKH    + V C CSD  V CLR +   C C I +K++L W  E+EM   +   ++ + +L    +   A+ ++++ + A
Sbjct:  539 LPPNRLDKLDDESADYDDKRLCHSCKHICFFSAVCCECSDSKVSCLRHSHYMCRCHISRKFMLVWTPEEEMKDAIANVRKRMSELEGSNSQSQAVPTYESLVDA 642          
BLAST of mRNA_L-elsbetiae_contig747.16357.1 vs. uniprot
Match: A0A7S0G863_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G863_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.830e-16
Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = 3
Query:   21 LPRFRLDFIEQESEDYDEKRMCKTCKHTVLMTGVICPCSDVSVWCLRCAEKACGCPIDKKYLLSWWTEDEMSVFLQTAQEYLLKLANGQADEAAIASFKANIK 329
            LP+ RLD +++ES DYD+KR+C +CKH    + V C CS   V CLR + + C CP D KY++ W T  E++   Q  +++   L   + + A  +S    IK
Sbjct:  484 LPKNRLDQLDEESADYDDKRLCHSCKHVCFFSAVACECSQSKVSCLRHSHQLCSCPPDSKYMMIWSTAHELAETHQKVEDFCKALK--EKEFAKKSSSNVQIK 584          
BLAST of mRNA_L-elsbetiae_contig747.16357.1 vs. uniprot
Match: B8BTH4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTH4_THAPS)

HSP 1 Score: 83.6 bits (205), Expect = 4.990e-16
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   21 LPRFRLDFIEQESEDYDEKRMCKTCKHTVLMTGVICPCSDVSVWCLRCAEKACGCPIDKKYLLSWWTEDEMSVFLQTAQEYLLKLANGQADEAAIAS 311
            LP  RLD ++++S DYD+KR+C +CKH    + V C CS+  V CLR +   C C I +KY+L W  EDEM   ++  ++   +L      EA I+S
Sbjct:  551 LPANRLDQLDEDSADYDDKRLCHSCKHICFFSAVACECSESKVSCLRHSHYMCRCSIKRKYILIWTPEDEMRKTIERVEKRGNELEYSLKPEAGISS 647          
BLAST of mRNA_L-elsbetiae_contig747.16357.1 vs. uniprot
Match: A0A1E7FMP1_9STRA (JmjC-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMP1_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.890e-15
Identity = 35/92 (38.04%), Postives = 54/92 (58.70%), Query Frame = 3
Query:   21 LPRFRLDFIEQESEDYDEKRMCKTCKHTVLMTGVICPCSDVSVWCLRCAEKACGCPIDKKYLLSWWTEDEMSVFLQTAQEYLLKLANGQADE 296
            LP  RLD ++++S DYD+KR+C  CKH    + V C CS   V CLR +   C CP +++YL+ W  E+E++   +  +E   +L    AD+
Sbjct:  512 LPPNRLDQLDEDSADYDDKRLCHACKHICFFSAVACECSRSKVSCLRHSHYMCRCPFERRYLMVWSPEEELTQTCELVKERCAELKPKDADD 603          
BLAST of mRNA_L-elsbetiae_contig747.16357.1 vs. uniprot
Match: A0A7S2XRB0_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRB0_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 5.900e-15
Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = 3
Query:   21 LPRFRLDFIEQESEDYDEKRMCKTCKHTVLMTGVICPCSDVSVWCLRCAEKACGCPIDKKYLLSWWTEDEMSVFLQTAQEYLLKLANG 284
            LP  RLD +++ES DYD+KR+C  CKH    + V C CS   V CLR +   C CP ++KYL+ W  + EM+      + +   L  G
Sbjct:  493 LPHNRLDQLDEESADYDDKRLCHACKHVCFFSAVACECSQSKVSCLRHSHYMCRCPTERKYLMIWSNDSEMNKTRDEVKRFCEHLEEG 580          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig747.16357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LFA3_ECTSI1.020e-4266.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4IRT4_9STRA9.200e-2140.00Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2ESI0_TRICV1.630e-1744.09Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7R9WKL4_9STRA3.010e-1739.00Hypothetical protein n=2 Tax=Pseudictyota dubia Ta... [more]
A0A6U3NYJ8_9STRA1.160e-1637.11Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0RUL2_THAOC1.420e-1635.58Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S0G863_9STRA4.830e-1637.86Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B8BTH4_THAPS4.990e-1640.21Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A1E7FMP1_9STRA5.890e-1538.04JmjC-domain-containing protein n=1 Tax=Fragilariop... [more]
A0A7S2XRB0_9STRA5.900e-1539.77Hypothetical protein n=2 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig747contigL-elsbetiae_contig747:4332..5669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue2.4e-27
Seed eggNOG ortholog2880.D8LFA3
KEGG koko:K11446
Hectar predicted targeting categoryother localisation
EggNOG free text desc.histone lysine demethylation
EggNOG OGsCOG0055@1,KOG1246@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03036
Exons3
Model size417
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig747.16357.1prot_L-elsbetiae_contig747.16357.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig747 4853..5602 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816830.9871376-UTR-L-elsbetiae_contig747:4331..44081622816830.9871376-UTR-L-elsbetiae_contig747:4331..4408Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig747 4332..4408 +
1691683846.2956314-UTR-L-elsbetiae_contig747:4331..44081691683846.2956314-UTR-L-elsbetiae_contig747:4331..4408Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig747 4332..4408 +
1622816830.9987593-UTR-L-elsbetiae_contig747:4849..48521622816830.9987593-UTR-L-elsbetiae_contig747:4849..4852Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig747 4850..4852 +
1691683846.3071592-UTR-L-elsbetiae_contig747:4849..48521691683846.3071592-UTR-L-elsbetiae_contig747:4849..4852Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig747 4850..4852 +
1622816831.0342116-UTR-L-elsbetiae_contig747:5602..56691622816831.0342116-UTR-L-elsbetiae_contig747:5602..5669Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig747 5603..5669 +
1691683846.3395844-UTR-L-elsbetiae_contig747:5602..56691691683846.3395844-UTR-L-elsbetiae_contig747:5602..5669Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig747 5603..5669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816831.0095441-CDS-L-elsbetiae_contig747:4852..50681622816831.0095441-CDS-L-elsbetiae_contig747:4852..5068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig747 4853..5068 +
1691683846.3171306-CDS-L-elsbetiae_contig747:4852..50681691683846.3171306-CDS-L-elsbetiae_contig747:4852..5068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig747 4853..5068 +
1622816831.022761-CDS-L-elsbetiae_contig747:5548..56021622816831.022761-CDS-L-elsbetiae_contig747:5548..5602Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig747 5549..5602 +
1691683846.327459-CDS-L-elsbetiae_contig747:5548..56021691683846.327459-CDS-L-elsbetiae_contig747:5548..5602Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig747 5549..5602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig747.16357.1

>prot_L-elsbetiae_contig747.16357.1 ID=prot_L-elsbetiae_contig747.16357.1|Name=mRNA_L-elsbetiae_contig747.16357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
MCKTCKHTVLMTGVICPCSDVSVWCLRCAEKACGCPIDKKYLLSWWTEDE
MSVFLQTAQEYLLKLANGQADEAAIASFKANIKACYNRD*
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mRNA from alignment at L-elsbetiae_contig747:4332..5669+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig747.16357.1 ID=mRNA_L-elsbetiae_contig747.16357.1|Name=mRNA_L-elsbetiae_contig747.16357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1338bp|location=Sequence derived from alignment at L-elsbetiae_contig747:4332..5669+ (Laminarionema elsbetiae ELsaHSoW15)
GGAATTGCCCCTTGGAGGGCTTGCCCCGCTTCCGCTTGGACTTCATCGAG CAGGAATCGGAAGACTACGACGAGAAGGTGAGTTTTGTTTGTGTTTTATC TCGTGAGCTCGTCCTGCTTGTTTTTGTGATCTCGTTTGCCTGTGGAGCCA GCCCGTTCAGGCGTACCTGTTGGCTTGTGTAATAGCAGTGTCTCTTCCGC TCGCTGGGCTTGACTCGATGGAGCAGGTCTGGCCGCCGAGGTAAGGATAC TGTCCCGGATACAGTAAGTAGTCCAACAAGGCATCCTGTCGTGTCATCGC GATTACCCCACGAGCCGTCACCGTGGCCCCCTTGTTCTCTCCTCCTGCTG CCCACGCCGCTCACTCCCCTCTCTGTAGCTGATTTTGACAATGGCTGCAA AAAAACTCCCTTCTTCCCCACTCCTCCTGTGCCTCTATCCTCAACACGAA ACGCGCTAGAGCAAACAGCTCACGCTCGCCCGCCGTTCGCCCGCGTGCAC CCCCCGGAAATCATGTAGCGCATGTGCAAGACGTGCAAGCACACGGTTTT GATGACGGGAGTCATCTGCCCCTGCAGCGACGTCAGCGTGTGGTGCCTGC GGTGCGCCGAGAAGGCGTGCGGTTGCCCCATCGACAAGAAGTATTTATTG TCGTGGTGGACGGAGGATGAAATGTCTGTTTTCCTCCAGACGGCCCAAGA GTACCTCCTGAAGCTTGCGAACGGACAGGCCGATGAGGTAGACTATTCCA CATACGCGAATACCTATTCAGACGTTGCTTGTGTGCCTGGTAAATGATGC CAGCTGTTTTTTATGGGCTTGTTTTGTGATTGGTTCGCTTGGCTTTGCTC TGCTTGGCGTCTAGTCTAGCTAGAGCTCTCTTCTTGTCTTGTTCTCCGTC CACACTCTGTACCTTCGTGCAGAGATGCAGATTGCTGTTTTTTTTTCGCG CGTCCTATCCAGACTAGAGTCTAGTCTATGTGTTGAGCGTTTTTTTTATG TCGTCTTGCTTTTGAGGTGTTCGTGAAGTGGAAAGGTCCCCTCCACCTTT GCATCCGTCTCTTGTCCTGTTGTCTTGTGTCTGTGTCTCGTATGCATGTT TAACTCTTGATGATCGCCCTCTGCGTAGTCTACAGCGCCTCGGTGTCTCG ATCTTCGTCTCTCATGCCCACGTCTCTCCGCCTCTTTGGGCCTCTCCTCT CCCCTGTCACCTCGCAGGCCGCCATTGCCTCCTTCAAGGCGAACATCAAA GCCTGTTATAATCGAGACTGATGCGGTGCTCCGACGACGCACACCGCCGG CACGGCGAGCACCCTGTTGTGCCCCCGCTCCTCTGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig747:4332..5669+

>mRNA_L-elsbetiae_contig747.16357.1 ID=mRNA_L-elsbetiae_contig747.16357.1|Name=mRNA_L-elsbetiae_contig747.16357.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig747:4332..5669+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCAAGACGTGCAAGCACACGGTTTTGATGACGGGAGTCATCTGCCC
CTGCAGCGACGTCAGCGTGTGGTGCCTGCGGTGCGCCGAGAAGGCGTGCG
GTTGCCCCATCGACAAGAAGTATTTATTGTCGTGGTGGACGGAGGATGAA
ATGTCTGTTTTCCTCCAGACGGCCCAAGAGTACCTCCTGAAGCTTGCGAA
CGGACAGGCCGATGAGATGTGCAAGACGTGCAAGCACACGGTTTTGATGA
CGGGAGTCATCTGCCCCTGCAGCGACGTCAGCGTGTGGTGCCTGCGGTGC
GCCGAGAAGGCGTGCGGTTGCCCCATCGACAAGAAGTATTTATTGTCGTG
GTGGACGGAGGATGAAATGTCTGTTTTCCTCCAGACGGCCCAAGAGTACC
TCCTGAAGCTTGCGAACGGACAGGCCGATGAGGCCGCCATTGCCTCCTTC
AAGGCGAACATCAAAGCCTGTTATAATCGAGACTGAGCCGCCATTGCCTC
CTTCAAGGCGAACATCAAAGCCTGTTATAATCGAGACTGA
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