mRNA_L-elsbetiae_contig7348.16220.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7348.16220.1
Unique NamemRNA_L-elsbetiae_contig7348.16220.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7348.16220.1 vs. uniprot
Match: D7FM11_ECTSI (mRNA export factor GLE1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM11_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 3.850e-35
Identity = 92/142 (64.79%), Postives = 100/142 (70.42%), Query Frame = 1 
Query:  286 TCPADSTFVSPAA-KRSVSCCASTXXXXXXXXXXSADEDQEELEHRRSSTPSRLIFRAGFFKALRGSRAAAKRAKSAVKLKRRTRELQAAIARQAFHSAHPPQEGDGREGSXXXXXXXXXXXXGGMPRRAGGARGTPALSAR 708
            TCPADSTFVSPAA KRSVS CAS           +ADE++ ELEHRRSSTPSRLIFRAGFFKAL G+RAAAKRA+SA KLKR+T ELQAAI RQAFHSAHPP EG   +G              G+PRR  GA G   LSAR
Sbjct:  231 TCPADSTFVSPAAAKRSVSYCASAAGVPANAV--AADEEELELEHRRSSTPSRLIFRAGFFKALLGTRAAAKRARSATKLKRKTHELQAAIIRQAFHSAHPPHEGGSEDGGEEERKEE------GVPRRIKGATGE--LSAR 362
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7348.16220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM11_ECTSI3.850e-3564.79mRNA export factor GLE1 n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7348contigL-elsbetiae_contig7348:3841..5314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.6
Seed ortholog evalue3e-32
Seed eggNOG ortholog2880.D7FM11
Preferred nameGLE1
KEGG koko:K18723
KEGG TC1.I.1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000822,GO:0003006,GO:0003341,GO:0003351,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006449,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007422,GO:0008047,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008283,GO:0008289,GO:0009791,GO:0009799,GO:0009855,GO:0009889,GO:0009987,GO:0010001,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0012505,GO:0014009,GO:0014010,GO:0014037,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016973,GO:0019222,GO:0022008,GO:0022414,GO:0030154,GO:0030182,GO:0030234,GO:0031090,GO:0031224,GO:0031323,GO:0031326,GO:0031369,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034248,GO:0034399,GO:0034613,GO:0036094,GO:0042063,GO:0042802,GO:0042886,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043178,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044614,GO:0045184,GO:0046907,GO:0048316,GO:0048468,GO:0048608,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051641,GO:0051649,GO:0060255,GO:0060287,GO:0061458,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0098772,GO:2000112
EggNOG free text desc.inositol hexakisphosphate binding
EggNOG OGsKOG2412@1,KOG2412@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Exons2
Model size711
Cds size708
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816817.961431-CDS-L-elsbetiae_contig7348:3841..38641622816817.961431-CDS-L-elsbetiae_contig7348:3841..3864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7348 3842..3864 -
1691683836.6057506-CDS-L-elsbetiae_contig7348:3841..38641691683836.6057506-CDS-L-elsbetiae_contig7348:3841..3864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7348 3842..3864 -
1622816817.975067-CDS-L-elsbetiae_contig7348:4629..53141622816817.975067-CDS-L-elsbetiae_contig7348:4629..5314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7348 4630..5314 -
1691683836.6216843-CDS-L-elsbetiae_contig7348:4629..53141691683836.6216843-CDS-L-elsbetiae_contig7348:4629..5314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7348 4630..5314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7348.16220.1prot_L-elsbetiae_contig7348.16220.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7348 3842..5314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7348.16220.1

>prot_L-elsbetiae_contig7348.16220.1 ID=prot_L-elsbetiae_contig7348.16220.1|Name=mRNA_L-elsbetiae_contig7348.16220.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=236bp
GGGGRRRRGREDEEDEEACAYRSTSYLRGTGYRGNAVAFKRHRAEEDQAE
EGAARLANGGGGGGSGGGKPGGGGEEDLNQQDQRQQQQRASRRRRTCPAD
STFVSPAAKRSVSCCASTAGATAAAVALSADEDQEELEHRRSSTPSRLIF
RAGFFKALRGSRAAAKRAKSAVKLKRRTRELQAAIARQAFHSAHPPQEGD
GREGSSSGGGGGQEQKEGGMPRRAGGARGTPALSAR
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mRNA from alignment at L-elsbetiae_contig7348:3841..5314-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7348.16220.1 ID=mRNA_L-elsbetiae_contig7348.16220.1|Name=mRNA_L-elsbetiae_contig7348.16220.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1474bp|location=Sequence derived from alignment at L-elsbetiae_contig7348:3841..5314- (Laminarionema elsbetiae ELsaHSoW15)
GGGGGTGGTGGCCGCCGCCGCCGGGGCAGGGAGGACGAGGAGGACGAGGA
GGCGTGCGCGTATCGCAGCACGAGCTACCTCCGCGGCACCGGCTACAGGG
GCAACGCCGTAGCCTTCAAACGGCACCGCGCGGAGGAGGACCAGGCGGAG
GAGGGAGCAGCGCGGCTTGCCAACGGCGGCGGCGGCGGCGGCAGCGGCGG
CGGGAAGCCTGGCGGCGGCGGTGAGGAAGATCTAAACCAGCAGGACCAGC
GGCAGCAACAACAGCGGGCCTCTCGCCGCCGGCGGACGTGCCCGGCCGAC
AGCACGTTCGTCTCGCCGGCGGCGAAACGATCCGTCAGCTGCTGCGCGTC
GACCGCCGGCGCCACCGCCGCCGCCGTGGCGCTCTCCGCGGACGAGGACC
AGGAGGAGCTGGAGCACCGGCGATCTTCGACCCCGTCCCGTCTTATCTTC
CGCGCCGGCTTCTTCAAGGCGCTGCGCGGGAGCAGGGCGGCCGCGAAGCG
CGCGAAGTCGGCCGTCAAGCTCAAGAGGAGGACCCGCGAGCTCCAGGCCG
CGATCGCCAGGCAGGCCTTTCACTCGGCGCACCCTCCGCAAGAGGGCGAC
GGGCGCGAGGGTAGTAGCAGCGGCGGCGGCGGGGGGCAGGAGCAGAAGGA
GGGAGGGATGCCGCGCCGCGCCGGAGGGGCTAGAGGTACGTTTTAAGAGT
ACGGTCGGGGTGGGTGACTTCTTGCGAGATTAAAAGGCGGCACGGATGGT
AGCGGTGAGGCGAGGTTGAGGCTTGGGGTTCCTATGTAGTGTTGTGTCGG
CCGGCGCGATGCAGTGCTGTATCTTTCTCCGCCATTTTTCCGACACCCTT
TGTCGAACTGAGCTTTCGGGCATGTACCTACCGTATTTGGGTGACACAAG
ATACCACACCCCCTGGGCAGATTTTCAAAGCTCGATTCCTCTCCAGCAAG
AAGAGTGCCAGTGCCGAAAAGGGGTGGCGTTGGAAAGATCTAAATAGTCG
AGGGCTGTCCGGAATGTGTCGTTTGGTGCTGGCACCTTCTTCGTTGCGGA
ATAACGGAGCTCTCAAATTCGGTCCGGGGGGTGTGGTTTCTTGTGTCACC
TGCGGTATGCATGTAGCGTCTGCACTCCAGTGTGACTTTCACGGGTGGCA
CTTCCAAGCAAGAGGCACGCGACGAACTCGAAACATGAGTGTGACAAGAG
AGCGCGCAGTGGTCACGAGAGAAAGCAGCAGCAGCATCAGCAGCAGCAGC
ATTGCTGTCGCCATCTCGTGCACCACCCACACTTCTCGATGGCTACGCAT
GTGCCTTGCCGCACCCCCGTTGTGACCCGCATGTACGACGCAGCGCGTCT
CCTTTCTCACCCATTTTCCCGCGCATCCACTCTGCTCCCTACAATACGCG
TGTGGTTGTTTGGTTACCTTTATCCCGACAAAAAAACCGGTGCTCCGCAG
GCACGCCTGCGCTGTCCGCACGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7348:3841..5314-

>mRNA_L-elsbetiae_contig7348.16220.1 ID=mRNA_L-elsbetiae_contig7348.16220.1|Name=mRNA_L-elsbetiae_contig7348.16220.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1416bp|location=Sequence derived from alignment at L-elsbetiae_contig7348:3841..5314- (Laminarionema elsbetiae ELsaHSoW15)
GGGGGTGGTGGCCGCCGCCGCCGGGGCAGGGAGGACGAGGAGGACGAGGA
GGCGTGCGCGTATCGCAGCACGAGCTACCTCCGCGGCACCGGCTACAGGG
GCAACGCCGTAGCCTTCAAACGGCACCGCGCGGAGGAGGACCAGGCGGAG
GAGGGAGCAGCGCGGCTTGCCAACGGCGGCGGCGGCGGCGGCAGCGGCGG
CGGGAAGCCTGGCGGCGGCGGTGAGGAAGATCTAAACCAGCAGGACCAGC
GGCAGCAACAACAGCGGGCCTCTCGCCGCCGGCGGACGTGCCCGGCCGAC
AGCACGTTCGTCTCGCCGGCGGCGAAACGATCCGTCAGCTGCTGCGCGTC
GACCGCCGGCGCCACCGCCGCCGCCGTGGCGCTCTCCGCGGACGAGGACC
AGGAGGAGCTGGAGCACCGGCGATCTTCGACCCCGTCCCGTCTTATCTTC
CGCGCCGGCTTCTTCAAGGCGCTGCGCGGGAGCAGGGCGGCCGCGAAGCG
CGCGAAGTCGGCCGTCAAGCTCAAGAGGAGGACCCGCGAGCTCCAGGCCG
CGATCGCCAGGCAGGCCTTTCACTCGGCGCACCCTCCGCAAGAGGGCGAC
GGGCGCGAGGGTAGTAGCAGCGGCGGCGGCGGGGGGCAGGAGCAGAAGGA
GGGAGGGATGCCGCGCCGCGCCGGAGGGGCTAGAGGGGGGTGGTGGCCGC
CGCCGCCGGGGCAGGGAGGACGAGGAGGACGAGGAGGCGTGCGCGTATCG
CAGCACGAGCTACCTCCGCGGCACCGGCTACAGGGGCAACGCCGTAGCCT
TCAAACGGCACCGCGCGGAGGAGGACCAGGCGGAGGAGGGAGCAGCGCGG
CTTGCCAACGGCGGCGGCGGCGGCGGCAGCGGCGGCGGGAAGCCTGGCGG
CGGCGGTGAGGAAGATCTAAACCAGCAGGACCAGCGGCAGCAACAACAGC
GGGCCTCTCGCCGCCGGCGGACGTGCCCGGCCGACAGCACGTTCGTCTCG
CCGGCGGCGAAACGATCCGTCAGCTGCTGCGCGTCGACCGCCGGCGCCAC
CGCCGCCGCCGTGGCGCTCTCCGCGGACGAGGACCAGGAGGAGCTGGAGC
ACCGGCGATCTTCGACCCCGTCCCGTCTTATCTTCCGCGCCGGCTTCTTC
AAGGCGCTGCGCGGGAGCAGGGCGGCCGCGAAGCGCGCGAAGTCGGCCGT
CAAGCTCAAGAGGAGGACCCGCGAGCTCCAGGCCGCGATCGCCAGGCAGG
CCTTTCACTCGGCGCACCCTCCGCAAGAGGGCGACGGGCGCGAGGGTAGT
AGCAGCGGCGGCGGCGGGGGGCAGGAGCAGAAGGAGGGAGGGATGCCGCG
CCGCGCCGGAGGGGCTAGAGGCACGCCTGCGCTGTCCGCACGCGCACGCC
TGCGCTGTCCGCACGC
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