prot_L-elsbetiae_contig7348.16220.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7348.16220.1
Unique Nameprot_L-elsbetiae_contig7348.16220.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length236
Homology
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BLAST of mRNA_L-elsbetiae_contig7348.16220.1 vs. uniprot
Match: D7FM11_ECTSI (mRNA export factor GLE1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM11_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 3.850e-35
Identity = 92/142 (64.79%), Postives = 100/142 (70.42%), Query Frame = 0 
Query:   96 TCPADSTFVSPAA-KRSVSCCASTXXXXXXXXXXSADEDQEELEHRRSSTPSRLIFRAGFFKALRGSRAAAKRAKSAVKLKRRTRELQAAIARQAFHSAHPPQEGDGREGSXXXXXXXXXXXXGGMPRRAGGARGTPALSAR 236
            TCPADSTFVSPAA KRSVS CAS           +ADE++ ELEHRRSSTPSRLIFRAGFFKAL G+RAAAKRA+SA KLKR+T ELQAAI RQAFHSAHPP EG   +G              G+PRR  GA G   LSAR
Sbjct:  231 TCPADSTFVSPAAAKRSVSYCASAAGVPANAV--AADEEELELEHRRSSTPSRLIFRAGFFKALLGTRAAAKRARSATKLKRKTHELQAAIIRQAFHSAHPPHEGGSEDGGEEERKEE------GVPRRIKGATGE--LSAR 362
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7348.16220.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM11_ECTSI3.850e-3564.79mRNA export factor GLE1 n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7348contigL-elsbetiae_contig7348:3842..5314 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7348.16220.1mRNA_L-elsbetiae_contig7348.16220.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7348 3841..5314 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7348.16220.1 ID=prot_L-elsbetiae_contig7348.16220.1|Name=mRNA_L-elsbetiae_contig7348.16220.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=236bp
GGGGRRRRGREDEEDEEACAYRSTSYLRGTGYRGNAVAFKRHRAEEDQAE
EGAARLANGGGGGGSGGGKPGGGGEEDLNQQDQRQQQQRASRRRRTCPAD
STFVSPAAKRSVSCCASTAGATAAAVALSADEDQEELEHRRSSTPSRLIF
RAGFFKALRGSRAAAKRAKSAVKLKRRTRELQAAIARQAFHSAHPPQEGD
GREGSSSGGGGGQEQKEGGMPRRAGGARGTPALSAR
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