mRNA_L-elsbetiae_contig7348.16219.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7348.16219.1
Unique NamemRNA_L-elsbetiae_contig7348.16219.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig7348.16219.1 vs. uniprot
Match: D7FM11_ECTSI (mRNA export factor GLE1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM11_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 5.730e-47
Identity = 100/150 (66.67%), Postives = 121/150 (80.67%), Query Frame = 1 
Query:    1 EGHEVWRRVKVAEEEHDHAADEKAAARLDRLEKLRAEALAAFSQAQEAHAELLASATTAFDSAEGPDMATLRSLFAGGANTPGSRFKDDREVSALHKKYADLEAFLQQLAAAESAGDAGGLEALLASEXXXXXKSQPEVASALKALQAAK 450
            EG E+WRRV VAEEEH  AA+EKA AR+ RL+ LRAEAL AF QAQEA A+L+A+A TAFD+AEGPDMA LRSLFAGGA++P SRFKDD+EV +L KKY+ LEAFL+Q+  A  AG++ GLEALL+SE     K+QPEV SA +AL+ AK
Sbjct:  365 EGLEMWRRVNVAEEEHGKAAEEKAMARMRRLKNLRAEALMAFGQAQEALADLVATANTAFDAAEGPDMAKLRSLFAGGADSPSSRFKDDKEVRSLQKKYSALEAFLKQVKDANGAGNSAGLEALLSSEAAKGVKNQPEVVSASEALETAK 514
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7348.16219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM11_ECTSI5.730e-4766.67mRNA export factor GLE1 n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7348contigL-elsbetiae_contig7348:730..3835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.9
Seed ortholog evalue3.7e-42
Seed eggNOG ortholog2880.D7FM11
Preferred nameGLE1
KEGG koko:K18723
KEGG TC1.I.1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000822,GO:0003006,GO:0003341,GO:0003351,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006449,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007422,GO:0008047,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008283,GO:0008289,GO:0009791,GO:0009799,GO:0009855,GO:0009889,GO:0009987,GO:0010001,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0012505,GO:0014009,GO:0014010,GO:0014037,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016973,GO:0019222,GO:0022008,GO:0022414,GO:0030154,GO:0030182,GO:0030234,GO:0031090,GO:0031224,GO:0031323,GO:0031326,GO:0031369,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034248,GO:0034399,GO:0034613,GO:0036094,GO:0042063,GO:0042802,GO:0042886,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043178,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044614,GO:0045184,GO:0046907,GO:0048316,GO:0048468,GO:0048608,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051641,GO:0051649,GO:0060255,GO:0060287,GO:0061458,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0098772,GO:2000112
EggNOG free text desc.inositol hexakisphosphate binding
EggNOG OGsKOG2412@1,KOG2412@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019
Ec32 ortholog descriptionGLE1-like
Ec32 orthologEc-01_010230.1
Exons4
Model size483
Cds size483
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7348.16219.1prot_L-elsbetiae_contig7348.16219.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7348 730..3835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816818.0667577-CDS-L-elsbetiae_contig7348:729..8661622816818.0667577-CDS-L-elsbetiae_contig7348:729..866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7348 730..866 -
1691683836.6563904-CDS-L-elsbetiae_contig7348:729..8661691683836.6563904-CDS-L-elsbetiae_contig7348:729..866Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7348 730..866 -
1622816818.078405-CDS-L-elsbetiae_contig7348:1700..17851622816818.078405-CDS-L-elsbetiae_contig7348:1700..1785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7348 1701..1785 -
1691683836.6708047-CDS-L-elsbetiae_contig7348:1700..17851691683836.6708047-CDS-L-elsbetiae_contig7348:1700..1785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7348 1701..1785 -
1622816818.0886168-CDS-L-elsbetiae_contig7348:2991..31511622816818.0886168-CDS-L-elsbetiae_contig7348:2991..3151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7348 2992..3151 -
1691683836.681625-CDS-L-elsbetiae_contig7348:2991..31511691683836.681625-CDS-L-elsbetiae_contig7348:2991..3151Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7348 2992..3151 -
1622816818.10076-CDS-L-elsbetiae_contig7348:3734..38351622816818.10076-CDS-L-elsbetiae_contig7348:3734..3835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7348 3735..3835 -
1691683836.6928968-CDS-L-elsbetiae_contig7348:3734..38351691683836.6928968-CDS-L-elsbetiae_contig7348:3734..3835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7348 3735..3835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7348.16219.1

>prot_L-elsbetiae_contig7348.16219.1 ID=prot_L-elsbetiae_contig7348.16219.1|Name=mRNA_L-elsbetiae_contig7348.16219.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
EGHEVWRRVKVAEEEHDHAADEKAAARLDRLEKLRAEALAAFSQAQEAHA
ELLASATTAFDSAEGPDMATLRSLFAGGANTPGSRFKDDREVSALHKKYA
DLEAFLQQLAAAESAGDAGGLEALLASEAAESAKSQPEVASALKALQAAK
ARAEAEAEAAR
back to top

mRNA from alignment at L-elsbetiae_contig7348:730..3835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7348.16219.1 ID=mRNA_L-elsbetiae_contig7348.16219.1|Name=mRNA_L-elsbetiae_contig7348.16219.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3106bp|location=Sequence derived from alignment at L-elsbetiae_contig7348:730..3835- (Laminarionema elsbetiae ELsaHSoW15)
GAAGGCCACGAGGTGTGGCGCCGCGTGAAGGTAGCGGAAGAGGAGCACGA
CCACGCGGCAGACGAAAAGGCCGCGGCGAGGCTAGACAGGCTAGAGAAGC
TGTGAGGACACGATATGTAGGCGGTTGTTTCGCATGTTGTTGTCCCCGGG
GCTGCTGTCGCACTGACTGCTGTGTTGCTTGTCCTCGTGGCGGTGTTGTG
ATGCAAACGAAAAAGCATGTACCAGGTTACCATGTTACCGTGTTACCATG
TGGAATGCCTCTGCGCGCGTGTGGCTACGCGCTTGATTGATTTTATCTGT
GGATATTGGTGGCCTCTGCAGCTCTGTTATTGTCGTGCTTTCTGTGTACG
TGGAGTAGTGCGGCTGGCCGCCGAACTTTTGTGCTGCTGCTGATCCGCTT
GGCCCTCCTTTGTTGGCCCCACGGCCCACACTCCGGCCGTTTTTGACGTA
CCCCCCCCCCCCCCCCCGTCGACCTCCTACATCCGCTCCCCCGCCGCCAC
CCCGCCCTTAATTTCGAAAGAGAAACATGCCTTGCGTTGGTGGATTAATT
GCATGACGAAACTCTCTCATCTTGCGGAGACCATCGGTATGTAGAGTTGC
GTTTTGAGTCCGCCCCGACCCGTCTGCCCCCTCGCCTCTTTCACTCCTGT
TGTCGGCCGACATCATCACCGATCCCCTTTTCAGGCGGGCTGAGGCGCTC
GCTGCCTTTTCTCAGGCGCAGGAGGCGCACGCAGAGCTCTTGGCCTCGGC
TACCACCGCGTTTGATTCCGCCGAGGGCCCCGACATGGCCACCCTGAGAA
GCCTGTTTGCTGGCGGGGCGAACACTCCAGGCTCACGGTTCAAGGCAAGG
ATATTATCGTTGGTGGTTTTTGTTGTTGTTGTTGTCGTTGTTCTGTTTTG
CTTTCGTTCCGTGCGAGTTGGATTGAAGGGCATTTCGGTCTCAGATGTAC
ATAGTTACTCCTTTGCTTTTTTTACACTCGGTTGGGATGAGGATGTGAGA
GGTACCGGTGCTTCATTGCTCGCGCTTTTCTTACTCTCCTTGCTCAAAGG
CAAAAGCGAGGCTAGGAATAGAGTGCGGGCGGGCGCTGCTTGGGGTCGAA
AGTCTCCCGAATAAATCAAGGACAAGACTTGACTTGTTTTTGACGGCAAC
ATTAAATTGCAGTGAAAATTAATTGCGTGAGAATGTGGAGTCAGAGAGCT
CTTCTTTTTTTTCTTCAGGATATCGCGTCGTCTTCGAAGAAAAGCTCTCG
TCGGTGGCGAGATGGTACTAATTAATGGCCTATGTGGCGGGGGGGAGAGA
AGGAGTGGAATGTCTTACCCCCCACCCCCCCCCACCCCCTTGCCTTATTC
CTTTTGGGGGAGTAATACGGATCTTGAGCGTCTCGCACGCCCGCCTCCTA
CCCGCGCACAACGTCCGGGGCGTCCGCCTACTGCTGTCGTGGGCGGACAG
GCCGACAGACGGATAGACAGACGGAGGTGTTGTGTGCTGCTTCCACCAGC
TCTGCTGTTGGCAGTTGTCGCCATTGCTCTGACCAAAACAGGAGCCGTTT
TTGCGAAAAAAAAATAACATGGTATGCATGAGGTTCTCATCCTCCCTCAT
GGATACGAAAAGGGGGTTCGATTTCCCGTGTATGTACGTATGTGGTATGC
GTGCATGTGGCGGTGGGGCAGGTGGGCTCTCACGAACCTTTACAAATAAG
TGTTTGCTTCTGCGCGGCGAAACAAAATGGTTCGGAGGCTTTCGACCCCG
AGAAGCAGGGACCAAGCAGCAGCAACACGAGTTGCCCCTGGCCCCCCTGT
CCTGAGACCCCAAACTATTTAAGGAAGACTGCTGTGTGGCAAACGGGTTT
TGAGTTCTCCCACATGTTTGGTGGTTCCTCTATCGGAGGTAGAAGCTGAT
CCGTCTCGAAGGGGGGTTGTTGAGTGTTGAATGGGCAAAGGTGGAAGGCA
CGAAACGATTCAGCACGTAAGGTAACGCCCCCCCCCCCACCCTCCCCCCT
CCCCATTCTTCCGCGTGCCCCCCGATCTCCGGGATGTGTGTTACGGGCAG
GACGACAGAGAAGTGAGCGCTCTACACAAGAAGTACGCGGACCTGGAGGC
GTTCCTGCAGCAGCTCGCGGCGGCAGAGAGCGCGGGTGAGGAACAGGGCC
GGCCCCGTGAGCTCTGACCCCGACATCCTGCTTTGTTGTCTACCTTTACA
CGACTTCAGCCTCCTTTGTAGCCGACCCACCAGACCGTCTCTTGAGAGCT
GAATTAAATGCCACCAGTATGTATCTTCCTGAACCGATATTTATTTGCAG
CTCGGTTGCTCTCCCGCGGCAGGAAAGGAGAAGCCGTGGCCGGGCTTGCA
CAATGCTGACACCGTTTTGTCCGATTGCCGTTTCCACGCACGGAGCATGT
ATTGCGAGCTCGGAACCTCTTGTCCCGGGGGGCACCGCCGTGCATGGATG
GTGGTGTATCGTGTTCGACTCTTTCCGGCAGATGATGCCCCCCTTCTTTG
CTCGAACAGAACCGAATCCCGCCCCCCGTGCCTAAGTCGGCGCCAGGCGC
GAAATTGCATGCCGAGTGCTCGAGCGCTCTGCCCCCATTCAAATATGTGC
ATGTACCATGGGTGTTGAGACGGGCTCGTAGCCGAGATGGGCTAAAATGC
AAAAGAGCGCCCTCTCTGATGCGGGAGGCGCAGGCTGCTTCTTAGCCAGA
CCTCCGGGAACGAGACCCCCCACAGCCGCGTTTGGTTCCCGTCCGCGTCT
CCACAGGTCCTGGTGCCAAAGCAAGTCAGTTGGTTGCTTTGCGCGTGAGC
CCTCCGTCGACACTTTGGGGGCGACGTATGTACGCAGATGATGTATACAT
ACGTACTTTATACCTCGGGGGTCAGTAAACAGTCTTCCTTTTCCCCTCAA
CGGGGTACCGACGCATTTGCTCTTTCACCGTCCCCCCTGTGTGTCATATG
TATCATTTCACCCGTGCAGGAGACGCGGGGGGGCTCGAGGCTCTGCTCGC
GAGCGAAGCCGCAGAGAGCGCCAAGAGCCAGCCCGAGGTGGCGTCGGCGT
TGAAAGCCTTGCAGGCGGCGAAGGCACGGGCCGAGGCTGAAGCGGAAGCC
GCGAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7348:730..3835-

>mRNA_L-elsbetiae_contig7348.16219.1 ID=mRNA_L-elsbetiae_contig7348.16219.1|Name=mRNA_L-elsbetiae_contig7348.16219.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig7348:730..3835- (Laminarionema elsbetiae ELsaHSoW15)
GAAGGCCACGAGGTGTGGCGCCGCGTGAAGGTAGCGGAAGAGGAGCACGA
CCACGCGGCAGACGAAAAGGCCGCGGCGAGGCTAGACAGGCTAGAGAAGC
TGAAGGCCACGAGGTGTGGCGCCGCGTGAAGGTAGCGGAAGAGGAGCACG
ACCACGCGGCAGACGAAAAGGCCGCGGCGAGGCTAGACAGGCTAGAGAAG
CTGCGGGCTGAGGCGCTCGCTGCCTTTTCTCAGGCGCAGGAGGCGCACGC
AGAGCTCTTGGCCTCGGCTACCACCGCGTTTGATTCCGCCGAGGGCCCCG
ACATGGCCACCCTGAGAAGCCTGTTTGCTGGCGGGGCGAACACTCCAGGC
TCACGGTTCAAGGCGGGCTGAGGCGCTCGCTGCCTTTTCTCAGGCGCAGG
AGGCGCACGCAGAGCTCTTGGCCTCGGCTACCACCGCGTTTGATTCCGCC
GAGGGCCCCGACATGGCCACCCTGAGAAGCCTGTTTGCTGGCGGGGCGAA
CACTCCAGGCTCACGGTTCAAGGACGACAGAGAAGTGAGCGCTCTACACA
AGAAGTACGCGGACCTGGAGGCGTTCCTGCAGCAGCTCGCGGCGGCAGAG
AGCGCGGGACGACAGAGAAGTGAGCGCTCTACACAAGAAGTACGCGGACC
TGGAGGCGTTCCTGCAGCAGCTCGCGGCGGCAGAGAGCGCGGGAGACGCG
GGGGGGCTCGAGGCTCTGCTCGCGAGCGAAGCCGCAGAGAGCGCCAAGAG
CCAGCCCGAGGTGGCGTCGGCGTTGAAAGCCTTGCAGGCGGCGAAGGCAC
GGGCCGAGGCTGAAGCGGAAGCCGCGAGGGAGACGCGGGGGGGCTCGAGG
CTCTGCTCGCGAGCGAAGCCGCAGAGAGCGCCAAGAGCCAGCCCGAGGTG
GCGTCGGCGTTGAAAGCCTTGCAGGCGGCGAAGGCACGGGCCGAGGCTGA
AGCGGAAGCCGCGAGG
back to top