mRNA_L-elsbetiae_contig7340.16212.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7340.16212.1
Unique NamemRNA_L-elsbetiae_contig7340.16212.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7340.16212.1 vs. uniprot
Match: D7G681_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G681_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 5.540e-20
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 3 
Query:  519 RLMHYLGEKDSAAAMNIFCALVVVGGCFVMFAIRSKWFYLLKKQLIEFEERVNAQL 686
            RLMH++GE+D AAAMNIF ALVVVGG FVMFAIRSK FYLLKKQL++FEE VNAQL
Sbjct:    2 RLMHHVGERDGAAAMNIFFALVVVGGGFVMFAIRSKSFYLLKKQLVDFEESVNAQL 57
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7340.16212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G681_ECTSI5.540e-2082.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7340contigL-elsbetiae_contig7340:270..1152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size883
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7340.16212.1prot_L-elsbetiae_contig7340.16212.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7340 653..976 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816817.387787-UTR-L-elsbetiae_contig7340:269..6521622816817.387787-UTR-L-elsbetiae_contig7340:269..652Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7340 270..652 +
1691683836.1901772-UTR-L-elsbetiae_contig7340:269..6521691683836.1901772-UTR-L-elsbetiae_contig7340:269..652Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7340 270..652 +
1622816817.4110675-UTR-L-elsbetiae_contig7340:976..11521622816817.4110675-UTR-L-elsbetiae_contig7340:976..1152Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7340 977..1152 +
1691683836.2094932-UTR-L-elsbetiae_contig7340:976..11521691683836.2094932-UTR-L-elsbetiae_contig7340:976..1152Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7340 977..1152 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816817.3992765-CDS-L-elsbetiae_contig7340:652..9761622816817.3992765-CDS-L-elsbetiae_contig7340:652..976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7340 653..976 +
1691683836.1997955-CDS-L-elsbetiae_contig7340:652..9761691683836.1997955-CDS-L-elsbetiae_contig7340:652..976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7340 653..976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7340.16212.1

>prot_L-elsbetiae_contig7340.16212.1 ID=prot_L-elsbetiae_contig7340.16212.1|Name=mRNA_L-elsbetiae_contig7340.16212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
MGSIVHRHNWPVPGAQELIFDNGRAGIMGDIEFWFKITLVFYALERLMHY
LGEKDSAAAMNIFCALVVVGGCFVMFAIRSKWFYLLKKQLIEFEERVNAQ
LTLSTLT*
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mRNA from alignment at L-elsbetiae_contig7340:270..1152+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7340.16212.1 ID=mRNA_L-elsbetiae_contig7340.16212.1|Name=mRNA_L-elsbetiae_contig7340.16212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=883bp|location=Sequence derived from alignment at L-elsbetiae_contig7340:270..1152+ (Laminarionema elsbetiae ELsaHSoW15)
CGGAGGCCAAGCTTGGCTTCCACCCTTACTCCACGTACCAAGTGCACTCT
GCCGTACCAAAATCCGTTTCTTGCGGTTTACCTTCGAGACGAGAGCAGAG
AAGCTCACCGCTGCTGCACTTGCTGAGGTGCTCAGGACCGGTGGAGCATT
CGCACGGATTCGACATCTACGCCAATGGACTCTCGGAGATCCCGTCGGAA
TGGTCGATGTAGGTGGTCTTTGCCGTTGCTTTCCCACCAGAGCCTGCTCC
CGATTAGCCACCAATATTTGTTGACAAGGTATCGCCACCCCTCCTGCGCC
TTCTCTCTCTCTCTCTCTTTCTGGTAGATCCACCCGAGGCCGACAGGCGT
CAGCACCTACTGTCTATTGCTGGCAATCAAGATATGGGATCAATAGTACA
TAGGCACAACTGGCCTGTACCTGGAGCTCAGGAGCTCATTTTTGACAACG
GGAGAGCTGGGATCATGGGCGACATAGAATTTTGGTTCAAAATAACGCTT
GTGTTCTACGCGCTTGAGCGTCTCATGCACTACCTTGGAGAGAAGGATAG
TGCGGCGGCGATGAATATTTTCTGTGCCCTCGTTGTAGTAGGAGGCTGTT
TTGTCATGTTTGCGATCAGGAGTAAGTGGTTCTACCTCCTCAAAAAGCAG
CTCATAGAATTCGAAGAGAGAGTGAACGCTCAGCTTACGCTCAGCACGCT
CACATAAAAGCCCGACATGAGACGGTGGCAACGGGAGCCGAAATAGAAGC
TCTTCGTGGGCTGATCACTCAGAAAATGGGAGCTACTTGAGGGGTGCTGG
TGTTACTTGTCTTCGTTTATTCAAGGGGTGCTGGTCTTTCGCTTCAACCA
GGACGGATCGATACTTTTGTCGGTTAGACCACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7340:270..1152+

>mRNA_L-elsbetiae_contig7340.16212.1 ID=mRNA_L-elsbetiae_contig7340.16212.1|Name=mRNA_L-elsbetiae_contig7340.16212.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig7340:270..1152+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGATCAATAGTACATAGGCACAACTGGCCTGTACCTGGAGCTCAGGA
GCTCATTTTTGACAACGGGAGAGCTGGGATCATGGGCGACATAGAATTTT
GGTTCAAAATAACGCTTGTGTTCTACGCGCTTGAGCGTCTCATGCACTAC
CTTGGAGAGAAGGATAGTGCGGCGGCGATGAATATTTTCTGTGCCCTCGT
TGTAGTAGGAGGCTGTTTTGTCATGTTTGCGATCAGGAGTAAGTGGTTCT
ACCTCCTCAAAAAGCAGCTCATAGAATTCGAAGAGAGAGTGAACGCTCAG
CTTACGCTCAGCACGCTCACATAAATGGGATCAATAGTACATAGGCACAA
CTGGCCTGTACCTGGAGCTCAGGAGCTCATTTTTGACAACGGGAGAGCTG
GGATCATGGGCGACATAGAATTTTGGTTCAAAATAACGCTTGTGTTCTAC
GCGCTTGAGCGTCTCATGCACTACCTTGGAGAGAAGGATAGTGCGGCGGC
GATGAATATTTTCTGTGCCCTCGTTGTAGTAGGAGGCTGTTTTGTCATGT
TTGCGATCAGGAGTAAGTGGTTCTACCTCCTCAAAAAGCAGCTCATAGAA
TTCGAAGAGAGAGTGAACGCTCAGCTTACGCTCAGCACGCTCACATAA
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