mRNA_L-elsbetiae_contig7331.16204.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7331.16204.1
Unique NamemRNA_L-elsbetiae_contig7331.16204.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7331.16204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7331contigL-elsbetiae_contig7331:4676..5190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size515
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7331.16204.1prot_L-elsbetiae_contig7331.16204.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7331 4724..5044 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.6355484-UTR-L-elsbetiae_contig7331:4675..47231622816816.6355484-UTR-L-elsbetiae_contig7331:4675..4723Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7331 4676..4723 +
1691683835.6746159-UTR-L-elsbetiae_contig7331:4675..47231691683835.6746159-UTR-L-elsbetiae_contig7331:4675..4723Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7331 4676..4723 +
1622816816.6633806-UTR-L-elsbetiae_contig7331:5044..51901622816816.6633806-UTR-L-elsbetiae_contig7331:5044..5190Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7331 5045..5190 +
1691683835.699941-UTR-L-elsbetiae_contig7331:5044..51901691683835.699941-UTR-L-elsbetiae_contig7331:5044..5190Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7331 5045..5190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.6483257-CDS-L-elsbetiae_contig7331:4723..50441622816816.6483257-CDS-L-elsbetiae_contig7331:4723..5044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7331 4724..5044 +
1691683835.6864731-CDS-L-elsbetiae_contig7331:4723..50441691683835.6864731-CDS-L-elsbetiae_contig7331:4723..5044Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7331 4724..5044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7331.16204.1

>prot_L-elsbetiae_contig7331.16204.1 ID=prot_L-elsbetiae_contig7331.16204.1|Name=mRNA_L-elsbetiae_contig7331.16204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MSKLPGTASCLGSSEYDKAPAGGGEEEEEPRGSSSTAPTHPTLLLPALLP
KRGRPEPVAAVRLGWASRLADAASSPAAAEEIDRSGPDVAEDLVGENTPL
SVPLVR*
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mRNA from alignment at L-elsbetiae_contig7331:4676..5190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7331.16204.1 ID=mRNA_L-elsbetiae_contig7331.16204.1|Name=mRNA_L-elsbetiae_contig7331.16204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=515bp|location=Sequence derived from alignment at L-elsbetiae_contig7331:4676..5190+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCCGCCGAGACTGCCGCCTACACCCCCCGTCGCCCCTCTCTCCGCGAT
GAGCAAGCTTCCGGGCACGGCAAGCTGCCTGGGCAGCTCAGAGTATGATA
AGGCGCCGGCGGGAGGAGGAGAAGAAGAAGAAGAGCCCCGTGGTTCGTCG
AGCACGGCGCCCACCCATCCCACGCTGCTGCTGCCGGCGCTGTTGCCGAA
GAGAGGGCGGCCCGAGCCCGTCGCCGCTGTCCGCCTCGGCTGGGCCAGCC
GATTGGCCGACGCCGCCTCATCGCCTGCGGCGGCGGAGGAGATAGATCGC
AGCGGCCCCGACGTGGCCGAAGACCTTGTCGGAGAAAACACGCCTTTGTC
GGTGCCGTTGGTGCGGTGAGAATGGACGACAGGCGTTCTGTTGGTCTGCG
CCCCTGGAATCCATCGGAACGGCTCCTCCTGCTCGTTCGCGTTGGCCGCC
CCCGCCACGAGAGAAACCCTCGCGCCCGTCTTAGCCCTCGCCCTGCCCGG
CCCCGCCAGTGCTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7331:4676..5190+

>mRNA_L-elsbetiae_contig7331.16204.1 ID=mRNA_L-elsbetiae_contig7331.16204.1|Name=mRNA_L-elsbetiae_contig7331.16204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig7331:4676..5190+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCAAGCTTCCGGGCACGGCAAGCTGCCTGGGCAGCTCAGAGTATGA
TAAGGCGCCGGCGGGAGGAGGAGAAGAAGAAGAAGAGCCCCGTGGTTCGT
CGAGCACGGCGCCCACCCATCCCACGCTGCTGCTGCCGGCGCTGTTGCCG
AAGAGAGGGCGGCCCGAGCCCGTCGCCGCTGTCCGCCTCGGCTGGGCCAG
CCGATTGGCCGACGCCGCCTCATCGCCTGCGGCGGCGGAGGAGATAGATC
GCAGCGGCCCCGACGTGGCCGAAGACCTTGTCGGAGAAAACACGCCTTTG
TCGGTGCCGTTGGTGCGGTGAATGAGCAAGCTTCCGGGCACGGCAAGCTG
CCTGGGCAGCTCAGAGTATGATAAGGCGCCGGCGGGAGGAGGAGAAGAAG
AAGAAGAGCCCCGTGGTTCGTCGAGCACGGCGCCCACCCATCCCACGCTG
CTGCTGCCGGCGCTGTTGCCGAAGAGAGGGCGGCCCGAGCCCGTCGCCGC
TGTCCGCCTCGGCTGGGCCAGCCGATTGGCCGACGCCGCCTCATCGCCTG
CGGCGGCGGAGGAGATAGATCGCAGCGGCCCCGACGTGGCCGAAGACCTT
GTCGGAGAAAACACGCCTTTGTCGGTGCCGTTGGTGCGGTGA
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