mRNA_L-elsbetiae_contig7316.16188.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7316.16188.1
Unique NamemRNA_L-elsbetiae_contig7316.16188.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7316.16188.1 vs. uniprot
Match: D8LIF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF9_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 8.650e-83
Identity = 148/198 (74.75%), Postives = 166/198 (83.84%), Query Frame = 2 
Query:    5 KEVTAGKTMELVVQARDVYGNHRGIGGDSVQVFAQGPGGVLLHGSVTDTGDGNYGVSAWPVVAGAYHVSVLVTALEPSRWALGYRSVEQAVAGAHVSGSPFRLAVVEGAVAANASLAYGVGIDSPLAGGVFGTSVFTIRARDAMGNRLPSGGTGDFKVEVFSLADDNDGXXXXXXXXXXXXXGSSPVSVGQAVYTAAG 598
            K+VTAGK ME+VVQARD +GNHRG+GGDSVQ++A+GPGGV+LHG   DTGDGNY VSAWPV+AGAYH+SVLV++LEPSRWALGYRSVEQA+AGAHVSGSPFRL VVEGAVAANASLA+GVGIDSPLAGGVFGTS FTIRARD+MGNR+ SG TGDF VE+F LAD+                  SPVSVG AVYTA G
Sbjct: 1626 KQVTAGKMMEIVVQARDDHGNHRGVGGDSVQMYARGPGGVMLHGGAVDTGDGNYTVSAWPVMAGAYHMSVLVSSLEPSRWALGYRSVEQAMAGAHVSGSPFRLLVVEGAVAANASLAFGVGIDSPLAGGVFGTSAFTIRARDSMGNRVSSGSTGDFNVELF-LADE-------ATVTMGDGVDPSPVSVGNAVYTAGG 1815
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BLAST of mRNA_L-elsbetiae_contig7316.16188.1 vs. uniprot
Match: A0A836CC08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC08_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.750e-21
Identity = 66/146 (45.21%), Postives = 83/146 (56.85%), Query Frame = 2 
Query:   17 AGKTMELVVQARDVYGNHRGIGGDSVQVFAQGPGGVLLHGSVTDTGDGNYGVSAWPVVAGAYHVSVLVTALEPSRWALGYRSVEQAVAGAHVSGSPFRLAVVEGAVAANASLAYGVGIDSPLAGGVFGTSVFTIRARDAMGNRLPS 454
            AG      V ARD  G+   IGG +V  +A GPGG ++   VTD  DG Y V      AG Y +SVL+  +  ++W  GY +VE+AVA  HVSGSPF L V   A +A  S+ YG G  +  AG     + FTIRARDA GNR+ S
Sbjct: 2032 AGARQAFDVTARDSNGDRVWIGGAAVTAYAIGPGGAMVVADVTDRVDGTYQVEYTAYAAGPYALSVLLGGVPAAQWDTGYSAVERAVADLHVSGSPFALYVAPAAASAAHSVIYGTGAITATAGQ---PAQFTIRARDAFGNRVLS 2174
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BLAST of mRNA_L-elsbetiae_contig7316.16188.1 vs. uniprot
Match: A0A7S2C9F1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9F1_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.360e-13
Identity = 66/176 (37.50%), Postives = 86/176 (48.86%), Query Frame = 2 
Query:   17 AGKTMELVVQARDVYGNHRGIGGDSVQVFAQ------------------GPGGVLLHGSVTDTGDGNYGVSAWPVVAGAYHVSVLV--TALEPS-RWALGYRSVEQAVAGAHVSGSPFRLAVVEGAVAANASLAYG-------VGIDSPLAGGVFGTSVFTIRARDAMGNRLPSGG 460
            AG T    V+ARD +GN R  GGD V   A                   G G       V D GDG Y +S +P++AG Y +SVLV  +A  P+    LGY ++E+A AG+H+ GSPF++ +  GA   +   A+G        GI +P AGGV      TI ARD   N  P GG
Sbjct:  205 AGVTDHFTVEARDTFGNLRLKGGDQVSSVATQIVIGRTLSTDNEQSTYLGAGSFTTD--VIDAGDGTYNMSYYPIIAGVYTMSVLVGTSATGPAPHLDLGYSNIEEATAGSHIRGSPFKVVIHPGATFGSTCTAFGENTYRADAGIATP-AGGV------TIVARDKHSNVRPGGG 371
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7316.16188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LIF9_ECTSI8.650e-8374.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CC08_9STRA2.750e-2145.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2C9F1_9STRA2.360e-1337.50Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7316contigL-elsbetiae_contig7316:5382..7371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score268.5
Seed ortholog evalue2.4e-69
Seed eggNOG ortholog2880.D8LIF9
KEGG koko:K04437,ko:K06572
KEGG Pathwayko04010,ko04360,ko04510,ko05132,ko05205,map04010,map04360,map04510,map05132,map05205
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of membrane repolarization during atrial cardiac muscle cell action potential
EggNOG OGsCOG5069@1,KOG0518@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090,ko04147,ko04812
Exons4
Model size598
Cds size570
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7316.16188.1prot_L-elsbetiae_contig7316.16188.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7316 5410..7371 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816815.0669386-UTR-L-elsbetiae_contig7316:5381..54091622816815.0669386-UTR-L-elsbetiae_contig7316:5381..5409Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7316 5382..5409 +
1691683834.4520497-UTR-L-elsbetiae_contig7316:5381..54091691683834.4520497-UTR-L-elsbetiae_contig7316:5381..5409Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7316 5382..5409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816815.0812542-CDS-L-elsbetiae_contig7316:5409..54611622816815.0812542-CDS-L-elsbetiae_contig7316:5409..5461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7316 5410..5461 +
1691683834.465139-CDS-L-elsbetiae_contig7316:5409..54611691683834.465139-CDS-L-elsbetiae_contig7316:5409..5461Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7316 5410..5461 +
1622816815.0910342-CDS-L-elsbetiae_contig7316:5763..59411622816815.0910342-CDS-L-elsbetiae_contig7316:5763..5941Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7316 5764..5941 +
1691683834.4733667-CDS-L-elsbetiae_contig7316:5763..59411691683834.4733667-CDS-L-elsbetiae_contig7316:5763..5941Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7316 5764..5941 +
1622816815.100745-CDS-L-elsbetiae_contig7316:6655..68171622816815.100745-CDS-L-elsbetiae_contig7316:6655..6817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7316 6656..6817 +
1691683834.481781-CDS-L-elsbetiae_contig7316:6655..68171691683834.481781-CDS-L-elsbetiae_contig7316:6655..6817Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7316 6656..6817 +
1622816815.1135142-CDS-L-elsbetiae_contig7316:7193..73711622816815.1135142-CDS-L-elsbetiae_contig7316:7193..7371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7316 7194..7371 +
1691683834.4903078-CDS-L-elsbetiae_contig7316:7193..73711691683834.4903078-CDS-L-elsbetiae_contig7316:7193..7371Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7316 7194..7371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7316.16188.1

>prot_L-elsbetiae_contig7316.16188.1 ID=prot_L-elsbetiae_contig7316.16188.1|Name=mRNA_L-elsbetiae_contig7316.16188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=190bp
MELVVQARDVYGNHRGIGGDSVQVFAQGPGGVLLHGSVTDTGDGNYGVSA
WPVVAGAYHVSVLVTALEPSRWALGYRSVEQAVAGAHVSGSPFRLAVVEG
AVAANASLAYGVGIDSPLAGGVFGTSVFTIRARDAMGNRLPSGGTGDFKV
EVFSLADDNDGDDGDGGGSGDAGDGSSPVSVGQAVYTAAG
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mRNA from alignment at L-elsbetiae_contig7316:5382..7371+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7316.16188.1 ID=mRNA_L-elsbetiae_contig7316.16188.1|Name=mRNA_L-elsbetiae_contig7316.16188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1990bp|location=Sequence derived from alignment at L-elsbetiae_contig7316:5382..7371+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGAAGGAGGTCACCGCCGGGAAGACGATGGAGCTTGTGGTGCAGGCGA
GAGACGTCTACGGCAACCATCGCGGCATCGGTGCGTGGTTTTGCAATAAG
AAATAATTAAGTTGCTGCTTCGTTTCCACGATGTGCGGTTCGTCAGAAAC
GGCACAAGGGCCTCGGCAGTACAAATGGAAAACTCTGGTCTCCCACATCC
AACCTGCATCGTTCATCGTATGCACACAAACACATGAACACAGCAACCCA
GTATCAAGTGTGGGACGGTAAGAAAGGGAGGGTTAGTATGTCTACAACAG
TCTCCCTGGAACGGCGTTTTCGAGGGCCGGACGTACATGAACCGCTGAAA
AATTGTGGAACGTTTGTTCGAAACAAACGCAGGAGGCGACAGCGTCCAAG
TGTTCGCCCAGGGCCCCGGGGGCGTCCTCCTGCACGGCAGCGTGACCGAC
ACCGGGGACGGCAACTACGGCGTGTCCGCGTGGCCGGTCGTGGCGGGGGC
CTACCACGTGAGCGTCCTCGTCACCGCGCTCGAGCCGTCGCGTTGGGCCC
TGGGCTACAGGCAAGGATACCGATACAACTGAGCCCCTACGATTGCCGTC
AACTCGCACGTAGCTCGGTAGGTATGTACGGTTGTAGGTAGGTGGGTGCG
CAGATCTCGAAATGTCGGTCGGGTATTATACCTTACCCCTGAACCCACGC
CGTTGTCCCTTGACAACAAAGACAGACTTTTTGTATTGCCCCTTGTTCGG
CGAGTCTCGCCCTGGCCCTGATGCGGGCCGGAATACGAGCAGTAGCCTGA
TTCCCCACCAACAGCAACACTACATAGTCTGCCCTCACCTTAAAAATCTA
GACAAAAAAACGTGCGCTCCTTCCAGCGGTTCTACCTACATCAAACACTT
TGCAGGCACAGATAACGGAACGAAGATAACAAAAGCCATACTTCGCTCTC
AGAAAGCAGCTGACACCCCAGACATACATATATACATACGTTAATACGTA
CGGCATGCAACGTATACACACACCCGCGAGTCCCTCCCTTACATCGACAA
GGCTGCCGTCGGAAAAAAGGAGGACACGCCGGCCTGAGAGGAAAAAGCAA
GGGCAAAACATTTCCTCCCCGGAGAGGCAGGAAGGCGGGCAGACCACTAC
CCGAAAAGCCTCGACCTAGATTATTTTGACCAACGGATATGTAGGACGAA
CCCTAAAATAGGCAGCAACGCGCCTCTCGTGTGTGCTTCTTCTTCCCGTG
CGAACAAAAACCCGAAACTGGCAGGAGCGTGGAGCAAGCGGTGGCGGGGG
CACACGTGTCCGGCAGCCCCTTCCGCCTGGCGGTGGTGGAGGGAGCCGTC
GCGGCCAACGCCTCCCTGGCGTACGGGGTGGGGATCGATTCGCCCCTCGC
AGGGGGCGTGTTCGGCACGTCGGTTTTCACGATAAGGCGAGGCGCAAAGA
CTGGCTTGCTTTTCCTAGCTGCCCTGCAGTGTCGTGTGCTCCCCGTCTGT
TGTGAAAGAGAGAAATGGGAACACGTGCGGGAGACCGACCCTGCGGAGCG
CGATTGTTTATGTTTCTTGAAAACGAGCGTCTAAGATATATTTCAGCATC
CGTAGATAGCACCCCCCCCACCAAGACGATACGACAAAAAATCGAGATTC
TACCGCACCAACCCGAACTTGTTCCTTTTCAACGCTCCTTGATATCGTGG
ACAGAACCCCACACCGTTGCCTCCCCATTTCTGCAGTAACACCCACCCGC
CCAACACCAACACCCACTCACCGATGCCCCCTTCCCCAACAATCAAACGG
CAAAAAAAACAGAGCGAGAGACGCGATGGGCAACCGCTTGCCTTCCGGGG
GCACCGGCGACTTCAAAGTGGAGGTGTTCTCCCTAGCCGATGATAACGAT
GGTGATGATGGCGATGGCGGTGGCAGTGGCGATGCTGGTGATGGATCGTC
CCCGGTCTCCGTCGGACAGGCGGTGTACACGGCGGCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7316:5382..7371+

>mRNA_L-elsbetiae_contig7316.16188.1 ID=mRNA_L-elsbetiae_contig7316.16188.1|Name=mRNA_L-elsbetiae_contig7316.16188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1140bp|location=Sequence derived from alignment at L-elsbetiae_contig7316:5382..7371+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGCTTGTGGTGCAGGCGAGAGACGTCTACGGCAACCATCGCGGCAT
CGATGGAGCTTGTGGTGCAGGCGAGAGACGTCTACGGCAACCATCGCGGC
ATCGGAGGCGACAGCGTCCAAGTGTTCGCCCAGGGCCCCGGGGGCGTCCT
CCTGCACGGCAGCGTGACCGACACCGGGGACGGCAACTACGGCGTGTCCG
CGTGGCCGGTCGTGGCGGGGGCCTACCACGTGAGCGTCCTCGTCACCGCG
CTCGAGCCGTCGCGTTGGGCCCTGGGCTACAGGAGGCGACAGCGTCCAAG
TGTTCGCCCAGGGCCCCGGGGGCGTCCTCCTGCACGGCAGCGTGACCGAC
ACCGGGGACGGCAACTACGGCGTGTCCGCGTGGCCGGTCGTGGCGGGGGC
CTACCACGTGAGCGTCCTCGTCACCGCGCTCGAGCCGTCGCGTTGGGCCC
TGGGCTACAGGAGCGTGGAGCAAGCGGTGGCGGGGGCACACGTGTCCGGC
AGCCCCTTCCGCCTGGCGGTGGTGGAGGGAGCCGTCGCGGCCAACGCCTC
CCTGGCGTACGGGGTGGGGATCGATTCGCCCCTCGCAGGGGGCGTGTTCG
GCACGTCGGTTTTCACGATAAGGAGCGTGGAGCAAGCGGTGGCGGGGGCA
CACGTGTCCGGCAGCCCCTTCCGCCTGGCGGTGGTGGAGGGAGCCGTCGC
GGCCAACGCCTCCCTGGCGTACGGGGTGGGGATCGATTCGCCCCTCGCAG
GGGGCGTGTTCGGCACGTCGGTTTTCACGATAAGAGCGAGAGACGCGATG
GGCAACCGCTTGCCTTCCGGGGGCACCGGCGACTTCAAAGTGGAGGTGTT
CTCCCTAGCCGATGATAACGATGGTGATGATGGCGATGGCGGTGGCAGTG
GCGATGCTGGTGATGGATCGTCCCCGGTCTCCGTCGGACAGGCGGTGTAC
ACGGCGGCGGGGAGCGAGAGACGCGATGGGCAACCGCTTGCCTTCCGGGG
GCACCGGCGACTTCAAAGTGGAGGTGTTCTCCCTAGCCGATGATAACGAT
GGTGATGATGGCGATGGCGGTGGCAGTGGCGATGCTGGTGATGGATCGTC
CCCGGTCTCCGTCGGACAGGCGGTGTACACGGCGGCGGGG
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