prot_L-elsbetiae_contig7316.16188.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig7316.16188.1
Unique Nameprot_L-elsbetiae_contig7316.16188.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length190
Homology
BLAST of mRNA_L-elsbetiae_contig7316.16188.1 vs. uniprot
Match: D8LIF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF9_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 8.930e-79
Identity = 142/190 (74.74%), Postives = 159/190 (83.68%), Query Frame = 0
Query:    1 MELVVQARDVYGNHRGIGGDSVQVFAQGPGGVLLHGSVTDTGDGNYGVSAWPVVAGAYHVSVLVTALEPSRWALGYRSVEQAVAGAHVSGSPFRLAVVEGAVAANASLAYGVGIDSPLAGGVFGTSVFTIRARDAMGNRLPSGGTGDFKVEVFSLADDNDGXXXXXXXXXXXXXGSSPVSVGQAVYTAAG 190
            ME+VVQARD +GNHRG+GGDSVQ++A+GPGGV+LHG   DTGDGNY VSAWPV+AGAYH+SVLV++LEPSRWALGYRSVEQA+AGAHVSGSPFRL VVEGAVAANASLA+GVGIDSPLAGGVFGTS FTIRARD+MGNR+ SG TGDF VE+F LAD+                  SPVSVG AVYTA G
Sbjct: 1634 MEIVVQARDDHGNHRGVGGDSVQMYARGPGGVMLHGGAVDTGDGNYTVSAWPVMAGAYHMSVLVSSLEPSRWALGYRSVEQAMAGAHVSGSPFRLLVVEGAVAANASLAFGVGIDSPLAGGVFGTSAFTIRARDSMGNRVSSGSTGDFNVELF-LADE-------ATVTMGDGVDPSPVSVGNAVYTAGG 1815          
BLAST of mRNA_L-elsbetiae_contig7316.16188.1 vs. uniprot
Match: A0A836CC08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC08_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.780e-20
Identity = 64/138 (46.38%), Postives = 81/138 (58.70%), Query Frame = 0
Query:    5 VQARDVYGNHRGIGGDSVQVFAQGPGGVLLHGSVTDTGDGNYGVSAWPVVAGAYHVSVLVTALEPSRWALGYRSVEQAVAGAHVSGSPFRLAVVEGAVAANASLAYGVGIDSPLAGGVFGTSVFTIRARDAMGNRLPS 142
            V ARD  G+   IGG +V  +A GPGG ++   VTD  DG Y V      AG Y +SVL+  +  ++W  GY +VE+AVA  HVSGSPF L V   A +A  S+ YG G  +  AG     + FTIRARDA GNR+ S
Sbjct: 2040 VTARDSNGDRVWIGGAAVTAYAIGPGGAMVVADVTDRVDGTYQVEYTAYAAGPYALSVLLGGVPAAQWDTGYSAVERAVADLHVSGSPFALYVAPAAASAAHSVIYGTGAITATAGQ---PAQFTIRARDAFGNRVLS 2174          
BLAST of mRNA_L-elsbetiae_contig7316.16188.1 vs. uniprot
Match: A0A7S2C9F1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9F1_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 7.310e-12
Identity = 63/170 (37.06%), Postives = 83/170 (48.82%), Query Frame = 0
Query:    3 LVVQARDVYGNHRGIGGDSVQVFAQ------------------GPGGVLLHGSVTDTGDGNYGVSAWPVVAGAYHVSVLV--TALEPS-RWALGYRSVEQAVAGAHVSGSPFRLAVVEGAVAANASLAYG-------VGIDSPLAGGVFGTSVFTIRARDAMGNRLPSGG 144
              V+ARD +GN R  GGD V   A                   G G       V D GDG Y +S +P++AG Y +SVLV  +A  P+    LGY ++E+A AG+H+ GSPF++ +  GA   +   A+G        GI +P AGGV      TI ARD   N  P GG
Sbjct:  211 FTVEARDTFGNLRLKGGDQVSSVATQIVIGRTLSTDNEQSTYLGAGSFTTD--VIDAGDGTYNMSYYPIIAGVYTMSVLVGTSATGPAPHLDLGYSNIEEATAGSHIRGSPFKVVIHPGATFGSTCTAFGENTYRADAGIATP-AGGV------TIVARDKHSNVRPGGG 371          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7316.16188.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LIF9_ECTSI8.930e-7974.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CC08_9STRA1.780e-2046.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2C9F1_9STRA7.310e-1237.06Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1..107
e-value: 4.3E-22
score: 80.1
IPR017868Filamin/ABP280 repeat-likePROSITEPS50194FILAMIN_REPEATcoord: 1..97
score: 13.349
IPR014756Immunoglobulin E-setSUPERFAMILY81296E set domainscoord: 2..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7316contigL-elsbetiae_contig7316:5410..7371 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7316.16188.1mRNA_L-elsbetiae_contig7316.16188.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig7316 5382..7371 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig7316.16188.1 ID=prot_L-elsbetiae_contig7316.16188.1|Name=mRNA_L-elsbetiae_contig7316.16188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=190bp
MELVVQARDVYGNHRGIGGDSVQVFAQGPGGVLLHGSVTDTGDGNYGVSA
WPVVAGAYHVSVLVTALEPSRWALGYRSVEQAVAGAHVSGSPFRLAVVEG
AVAANASLAYGVGIDSPLAGGVFGTSVFTIRARDAMGNRLPSGGTGDFKV
EVFSLADDNDGDDGDGGGSGDAGDGSSPVSVGQAVYTAAG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR017868Filamin/ABP280_repeat-like
IPR014756Ig_E-set