mRNA_L-elsbetiae_contig7304.16173.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7304.16173.1
Unique NamemRNA_L-elsbetiae_contig7304.16173.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7304.16173.1 vs. uniprot
Match: D8LEH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH6_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.070e-19
Identity = 46/58 (79.31%), Postives = 47/58 (81.03%), Query Frame = 3 
Query:  159 ELRPFFRDSRLETTLALIRSGQAFCQERRIVADFVRRAKPTAAGSGKAEVQPTDDLLR 332
            E R FFRD RLE TLALIRSGQAFCQER IV DFVRRAKPT  G GKAE+QP DDL R
Sbjct:  268 ERRNFFRDPRLEATLALIRSGQAFCQERHIVVDFVRRAKPTTVGLGKAELQPMDDLTR 325
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BLAST of mRNA_L-elsbetiae_contig7304.16173.1 vs. uniprot
Match: A0A6H5JCY2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.870e-11
Identity = 37/56 (66.07%), Postives = 38/56 (67.86%), Query Frame = 3 
Query:  165 RPFFRDSRLETTLALIRSGQAFCQERRIVADFVRRAKPTAAGSGKAEVQPTDDLLR 332
            R FFRD RLE TLA       FCQER IV DFVRRAKPT   SGKAE+QP DD  R
Sbjct:  559 RNFFRDPRLEATLA-------FCQERHIVVDFVRRAKPTTVASGKAELQPMDDHTR 607
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7304.16173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEH6_ECTSI2.070e-1979.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCY2_9PHAE3.870e-1166.07Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7304contigL-elsbetiae_contig7304:132..1185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_004650.1
Exons2
Model size373
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7304.16173.1prot_L-elsbetiae_contig7304.16173.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7304 170..1123 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816813.9736452-UTR-L-elsbetiae_contig7304:131..1691622816813.9736452-UTR-L-elsbetiae_contig7304:131..169Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7304 132..169 -
1691683833.580456-UTR-L-elsbetiae_contig7304:131..1691691683833.580456-UTR-L-elsbetiae_contig7304:131..169Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7304 132..169 -
1622816814.0113657-UTR-L-elsbetiae_contig7304:1123..11851622816814.0113657-UTR-L-elsbetiae_contig7304:1123..1185Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7304 1124..1185 -
1691683833.616437-UTR-L-elsbetiae_contig7304:1123..11851691683833.616437-UTR-L-elsbetiae_contig7304:1123..1185Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig7304 1124..1185 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816813.9907622-CDS-L-elsbetiae_contig7304:169..3011622816813.9907622-CDS-L-elsbetiae_contig7304:169..301Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7304 170..301 -
1691683833.5915308-CDS-L-elsbetiae_contig7304:169..3011691683833.5915308-CDS-L-elsbetiae_contig7304:169..301Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7304 170..301 -
1622816814.0014164-CDS-L-elsbetiae_contig7304:982..11231622816814.0014164-CDS-L-elsbetiae_contig7304:982..1123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7304 983..1123 -
1691683833.603836-CDS-L-elsbetiae_contig7304:982..11231691683833.603836-CDS-L-elsbetiae_contig7304:982..1123Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7304 983..1123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7304.16173.1

>prot_L-elsbetiae_contig7304.16173.1 ID=prot_L-elsbetiae_contig7304.16173.1|Name=mRNA_L-elsbetiae_contig7304.16173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
MAAPAGSSPLRRRHASRKAARARAPKGGKEDEELRPFFRDSRLETTLALI
RSGQAFCQERRIVADFVRRAKPTAAGSGKAEVQPTDDLLR*
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mRNA from alignment at L-elsbetiae_contig7304:132..1185-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7304.16173.1 ID=mRNA_L-elsbetiae_contig7304.16173.1|Name=mRNA_L-elsbetiae_contig7304.16173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1054bp|location=Sequence derived from alignment at L-elsbetiae_contig7304:132..1185- (Laminarionema elsbetiae ELsaHSoW15)
CCGCGGCTCCCCCGCCGCCGCCGCCGGCGCGGAGGAGGCTGGCCACGTGC
GCGGAAGCCCCGATGGCCGCGCCCGCCGGGTCGTCGCCGCTGAGGCGGCG
GCACGCTTCGCGGAAGGCGGCGCGAGCGAGGGCCCCGAAAGGCGGCAAGG
AGGATGAGGAGCTGCGGCCTTTCTTTCGGGACTCGCGCTTGGAAACGACG
TTGGTGAGAGAGCTGAAAACGAGATACAAAAGTTGGTAATTTGTTTGGCC
GCTTACAGCAAGCGGTATGCATACACATTTTTGACGAGCGCAATCGGCGC
GCTTCGCTTTGTGTGCGGTTGCCGGTGAAGCGCCCGTCGCCGCGACCAAT
TTTCCTTTTTTTTTTTCCCCCGCCGCCGAAAAGTGTGGTACGTGTACATT
TGTACCATGGCACTGTTGTTGTTTTCCCGACAAATATTGGTGCGCTTTGT
CTACCGGAGGACTTCCGGCACATATACCCCGGCTGCCCCGGCGCTTTGCG
GGGTGGGTCTGTTCACTCATGAGTAATTAATGGTTCACAGTATTTTACCA
CATCAGAGACATTTTTTTTTTTTCCGCACGTAAGTTTTTACCGGGGAAAA
TATATTGTACGCGCTTGCTAACACACGTATGTAAATACGTATGTACATAC
ATACCACACGGATTTGTGAACGCCCCTATTGAAGCTGCTGTCGGGTGTGC
TCTTAGTTGTCGGCCGAAATGGCCGCTGCTCCGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTCCGCGCACGCGAATCAACCTAAACGCGAGCACGCCCAT
GTCCCGTTCCCGTCGCTGTCTGCTGCGTCTTTACGTACGTACATACGGCC
AACCGCTTGTGCCCCCCCCCCTCCCACCCCAAAGGCGTTGATACGGTCGG
GACAGGCGTTTTGCCAGGAGCGGCGTATCGTGGCGGACTTTGTGAGGCGA
GCTAAGCCGACGGCCGCAGGGTCGGGCAAGGCGGAGGTGCAGCCCACGGA
TGATCTCTTGAGGTGATTGGCTGGGCTGATTCATATGCTCTGTATGTAAA
TACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7304:132..1185-

>mRNA_L-elsbetiae_contig7304.16173.1 ID=mRNA_L-elsbetiae_contig7304.16173.1|Name=mRNA_L-elsbetiae_contig7304.16173.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig7304:132..1185- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGCGCCCGCCGGGTCGTCGCCGCTGAGGCGGCGGCACGCTTCGCG
GAAGGCGGCGCGAGCGAGGGCCCCGAAAGGCGGCAAGGAGGATGAGGAGC
TGCGGCCTTTCTTTCGGGACTCGCGCTTGGAAACGACGTTGATGGCCGCG
CCCGCCGGGTCGTCGCCGCTGAGGCGGCGGCACGCTTCGCGGAAGGCGGC
GCGAGCGAGGGCCCCGAAAGGCGGCAAGGAGGATGAGGAGCTGCGGCCTT
TCTTTCGGGACTCGCGCTTGGAAACGACGTTGGCGTTGATACGGTCGGGA
CAGGCGTTTTGCCAGGAGCGGCGTATCGTGGCGGACTTTGTGAGGCGAGC
TAAGCCGACGGCCGCAGGGTCGGGCAAGGCGGAGGTGCAGCCCACGGATG
ATCTCTTGAGGTGAGCGTTGATACGGTCGGGACAGGCGTTTTGCCAGGAG
CGGCGTATCGTGGCGGACTTTGTGAGGCGAGCTAAGCCGACGGCCGCAGG
GTCGGGCAAGGCGGAGGTGCAGCCCACGGATGATCTCTTGAGGTGA
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