mRNA_L-elsbetiae_contig7245.16109.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7245.16109.1
Unique NamemRNA_L-elsbetiae_contig7245.16109.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig7245.16109.1 vs. uniprot
Match: D7G3G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G4_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 3.800e-31
Identity = 85/185 (45.95%), Postives = 103/185 (55.68%), Query Frame = 1 
Query:    1 VDLVRLDRIDAKRFTLLMEGFASPSVTSKMRRRKLCYNGPRLPPRYTSSSRPGSIHYSGKGIQSLLKKVCCSSRAGDSFFLCFSSDRDPSAQVLTGRLVESS-----ETLARLAN----FLFGA-PLPLEAVIFREGGSEGAGRAAVPADGINGAGARVLTVSDWVQAYGECNESRLWAWMYGGD 525
            V  +RL R+DAK F  L  GF S   T  +  R   Y GPR P  +TS+        SG+GI SLL  V  + R GD F LCFS   D  AQ++TG LV +       T +R  +     L G+ P P  A+IF E   E AGR A   DGINGAGARVL+V DWV  YGEC+ES L AW+Y G+
Sbjct:   31 VKAIRLGRVDAKSFFWLTRGFTSTKATELLAERGGRYAGPR-PASHTSACTGSPFFSSGQGITSLLSSVSANGRVGDRFVLCFSDGVDACAQMITGCLVATDGSGDCSTGSRYHDDNTYHLGGSSPPPCSAIIFGES-CERAGRPAGERDGINGAGARVLSVLDWVSVYGECSESLLCAWVYRGE 213
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7245.16109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3G4_ECTSI3.800e-3145.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7245contigL-elsbetiae_contig7245:5149..6131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_004510.1
Exons2
Model size546
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816807.1580372-CDS-L-elsbetiae_contig7245:5148..53521622816807.1580372-CDS-L-elsbetiae_contig7245:5148..5352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7245 5149..5352 +
1691683828.203341-CDS-L-elsbetiae_contig7245:5148..53521691683828.203341-CDS-L-elsbetiae_contig7245:5148..5352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7245 5149..5352 +
1622816807.1731315-CDS-L-elsbetiae_contig7245:5789..61311622816807.1731315-CDS-L-elsbetiae_contig7245:5789..6131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7245 5790..6131 +
1691683828.2161667-CDS-L-elsbetiae_contig7245:5789..61311691683828.2161667-CDS-L-elsbetiae_contig7245:5789..6131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7245 5790..6131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7245.16109.1prot_L-elsbetiae_contig7245.16109.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7245 5149..6131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7245.16109.1

>prot_L-elsbetiae_contig7245.16109.1 ID=prot_L-elsbetiae_contig7245.16109.1|Name=mRNA_L-elsbetiae_contig7245.16109.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
VDLVRLDRIDAKRFTLLMEGFASPSVTSKMRRRKLCYNGPRLPPRYTSSS
RPGSIHYSGKGIQSLLKKVCCSSRAGDSFFLCFSSDRDPSAQVLTGRLVE
SSETLARLANFLFGAPLPLEAVIFREGGSEGAGRAAVPADGINGAGARVL
TVSDWVQAYGECNESRLWAWMYGGDDEEEGGD
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mRNA from alignment at L-elsbetiae_contig7245:5149..6131+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7245.16109.1 ID=mRNA_L-elsbetiae_contig7245.16109.1|Name=mRNA_L-elsbetiae_contig7245.16109.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=983bp|location=Sequence derived from alignment at L-elsbetiae_contig7245:5149..6131+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGACCTCGTCCGCCTCGACCGCATCGACGCCAAGCGCTTCACCTTGCT
GATGGAAGGGTTCGCATCCCCTTCAGTGACCAGCAAAATGAGAAGGAGAA
AGCTGTGCTACAACGGGCCCCGCCTGCCGCCGCGGTATACCAGCAGCTCC
CGCCCGGGATCTATTCATTATTCCGGCAAAGGCATCCAGTCTTTACTGAA
GAAGGTGAGCTCAGCAAAGCTCTTCTACCTATTACCCCTATGCGTATGGA
TATGAATGGCGAGGTTCTGTTTCGATCGAATCATGCGATATAGTCTAGTC
TACACCTCGCCTAATCCCGCCGTGCGGATGCGCCCCGCCCCGCTTCCGGT
TTCTCGGTCACATTTCGACAAACAAAGGGTTCCTCTGTGTACACAAGCGA
AAACATGTACCATTTACGGTTCTTCTGTTGCTCGCAAGCAGAACACGAGG
AGAGTGAACACACACACACACACACAACGAAGCACCAACAACACCACTTA
CGACGAAAGACGAGCACAACAATTCGAAATTCTTCCCCACAATTTTCATC
GCTGAGCACTCATTCAATGCCTCGCAAGCCAAAGCCACCAGGCACTTATT
CTTCATCGTCGCTCCAACACCTACCACCCGCCTCGAATCAGGTATGCTGC
AGCAGCCGCGCCGGCGACAGCTTCTTCCTGTGCTTCTCCAGCGACCGGGA
TCCCTCCGCGCAGGTACTGACCGGGCGCCTCGTCGAGTCGAGCGAAACGC
TCGCAAGGCTCGCAAACTTTCTCTTCGGAGCTCCGCTGCCCCTGGAAGCG
GTCATCTTCCGAGAAGGCGGCAGCGAGGGGGCAGGGAGGGCGGCCGTACC
GGCGGACGGCATCAACGGGGCCGGCGCTCGTGTTCTCACCGTCTCAGACT
GGGTGCAAGCGTACGGCGAGTGCAACGAGTCGCGGCTCTGGGCGTGGATG
TACGGCGGAGACGATGAGGAGGAAGGGGGGGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7245:5149..6131+

>mRNA_L-elsbetiae_contig7245.16109.1 ID=mRNA_L-elsbetiae_contig7245.16109.1|Name=mRNA_L-elsbetiae_contig7245.16109.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig7245:5149..6131+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGACCTCGTCCGCCTCGACCGCATCGACGCCAAGCGCTTCACCTTGCT
GATGGAAGGGTTCGCATCCCCTTCAGTGACCAGCAAAATGAGAAGGAGAA
AGCTGTGCTACAACGGGCCCCGCCTGCCGCCGCGGTATACCAGCAGCTCC
CGCCCGGGATCTATTCATTATTCCGGCAAAGGCATCCAGTCTTTACTGAA
GAAGGTGGACCTCGTCCGCCTCGACCGCATCGACGCCAAGCGCTTCACCT
TGCTGATGGAAGGGTTCGCATCCCCTTCAGTGACCAGCAAAATGAGAAGG
AGAAAGCTGTGCTACAACGGGCCCCGCCTGCCGCCGCGGTATACCAGCAG
CTCCCGCCCGGGATCTATTCATTATTCCGGCAAAGGCATCCAGTCTTTAC
TGAAGAAGGTATGCTGCAGCAGCCGCGCCGGCGACAGCTTCTTCCTGTGC
TTCTCCAGCGACCGGGATCCCTCCGCGCAGGTACTGACCGGGCGCCTCGT
CGAGTCGAGCGAAACGCTCGCAAGGCTCGCAAACTTTCTCTTCGGAGCTC
CGCTGCCCCTGGAAGCGGTCATCTTCCGAGAAGGCGGCAGCGAGGGGGCA
GGGAGGGCGGCCGTACCGGCGGACGGCATCAACGGGGCCGGCGCTCGTGT
TCTCACCGTCTCAGACTGGGTGCAAGCGTACGGCGAGTGCAACGAGTCGC
GGCTCTGGGCGTGGATGTACGGCGGAGACGATGAGGAGGAAGGGGGGGAC
GTATGCTGCAGCAGCCGCGCCGGCGACAGCTTCTTCCTGTGCTTCTCCAG
CGACCGGGATCCCTCCGCGCAGGTACTGACCGGGCGCCTCGTCGAGTCGA
GCGAAACGCTCGCAAGGCTCGCAAACTTTCTCTTCGGAGCTCCGCTGCCC
CTGGAAGCGGTCATCTTCCGAGAAGGCGGCAGCGAGGGGGCAGGGAGGGC
GGCCGTACCGGCGGACGGCATCAACGGGGCCGGCGCTCGTGTTCTCACCG
TCTCAGACTGGGTGCAAGCGTACGGCGAGTGCAACGAGTCGCGGCTCTGG
GCGTGGATGTACGGCGGAGACGATGAGGAGGAAGGGGGGGAC
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