mRNA_L-elsbetiae_contig723.16087.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig723.16087.1
Unique NamemRNA_L-elsbetiae_contig723.16087.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig723.16087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig723contigL-elsbetiae_contig723:20357..21192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size836
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig723.16087.1prot_L-elsbetiae_contig723.16087.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig723 20580..21032 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816805.1465378-UTR-L-elsbetiae_contig723:20356..205791622816805.1465378-UTR-L-elsbetiae_contig723:20356..20579Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig723 20357..20579 +
1691683826.6431167-UTR-L-elsbetiae_contig723:20356..205791691683826.6431167-UTR-L-elsbetiae_contig723:20356..20579Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig723 20357..20579 +
1622816805.1672873-UTR-L-elsbetiae_contig723:21032..211921622816805.1672873-UTR-L-elsbetiae_contig723:21032..21192Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig723 21033..21192 +
1691683826.6633928-UTR-L-elsbetiae_contig723:21032..211921691683826.6633928-UTR-L-elsbetiae_contig723:21032..21192Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig723 21033..21192 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816805.1571183-CDS-L-elsbetiae_contig723:20579..210321622816805.1571183-CDS-L-elsbetiae_contig723:20579..21032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig723 20580..21032 +
1691683826.6531572-CDS-L-elsbetiae_contig723:20579..210321691683826.6531572-CDS-L-elsbetiae_contig723:20579..21032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig723 20580..21032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig723.16087.1

>prot_L-elsbetiae_contig723.16087.1 ID=prot_L-elsbetiae_contig723.16087.1|Name=mRNA_L-elsbetiae_contig723.16087.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
MSVVTFRQSRRPRYLRRAQKTKHTIKCPHRTRTTKDQTEITARRLGSFKE
PGRKEPVCGCFHLAGYIWDIFEDQTRSFFLLVACYEKSGVKKRWHNKSIY
PKQRNAHGGSELPPLLPPPRITAFESNRHKMRQAGSPREARGIRAALKKR
*
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mRNA from alignment at L-elsbetiae_contig723:20357..21192+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig723.16087.1 ID=mRNA_L-elsbetiae_contig723.16087.1|Name=mRNA_L-elsbetiae_contig723.16087.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=836bp|location=Sequence derived from alignment at L-elsbetiae_contig723:20357..21192+ (Laminarionema elsbetiae ELsaHSoW15)
AACGCAAATCTCCGAAAAAATAGGGCGGAAAGACCCGTCAAGGACGGGCC
GGGCCACCACCGCAGAAAGGCAACCAGCTAGAGTGTCATAGCAGGTAAAA
CCGCACAAGGCTGAGGTTCTATTTGATAGAAGTAGTAGTAAAAATAAAAA
GAATAAAACACGAAATCAGCCGGGCGAGCAGCGAAAAGACACAAAGCGAA
GCCCGTTGTCTGATGTGTGTTGTATGTCTGTCGTAACTTTCCGTCAATCA
AGGCGCCCGAGATATCTCAGGCGGGCCCAAAAAACGAAGCACACAATCAA
ATGCCCACACAGAACCCGAACCACCAAAGACCAAACCGAAATCACTGCCC
GTAGGTTAGGTTCTTTTAAAGAGCCTGGTAGAAAGGAACCGGTGTGCGGT
TGTTTCCACTTGGCAGGATACATATGGGACATTTTTGAGGACCAAACGCG
TTCATTCTTTCTTCTTGTCGCGTGCTACGAAAAAAGTGGCGTTAAAAAGC
GCTGGCACAATAAATCCATATACCCAAAACAGAGAAACGCCCATGGTGGA
AGTGAACTTCCTCCCCTTCTACCCCCCCCCCGCATCACGGCGTTCGAATC
GAATCGACATAAGATGAGACAAGCTGGGAGCCCTCGCGAAGCGCGTGGAA
TCCGGGCCGCTCTTAAAAAGAGGTGAAAACATAGACTTGGGGCTTCCGTG
AAGCAAAACTGAAACCCGAGTACAGCCATCATCAAATGTGAGTTAGTTCT
TAACATCGAAACGATGGCGCGATGGCGACTCTAGAGTCACCAACCCGCAC
GCCGAAGCACGAACAGCAGCAAAACCGAAGGAGGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig723:20357..21192+

>mRNA_L-elsbetiae_contig723.16087.1 ID=mRNA_L-elsbetiae_contig723.16087.1|Name=mRNA_L-elsbetiae_contig723.16087.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig723:20357..21192+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTGTCGTAACTTTCCGTCAATCAAGGCGCCCGAGATATCTCAGGCG
GGCCCAAAAAACGAAGCACACAATCAAATGCCCACACAGAACCCGAACCA
CCAAAGACCAAACCGAAATCACTGCCCGTAGGTTAGGTTCTTTTAAAGAG
CCTGGTAGAAAGGAACCGGTGTGCGGTTGTTTCCACTTGGCAGGATACAT
ATGGGACATTTTTGAGGACCAAACGCGTTCATTCTTTCTTCTTGTCGCGT
GCTACGAAAAAAGTGGCGTTAAAAAGCGCTGGCACAATAAATCCATATAC
CCAAAACAGAGAAACGCCCATGGTGGAAGTGAACTTCCTCCCCTTCTACC
CCCCCCCCGCATCACGGCGTTCGAATCGAATCGACATAAGATGAGACAAG
CTGGGAGCCCTCGCGAAGCGCGTGGAATCCGGGCCGCTCTTAAAAAGAGG
TGAATGTCTGTCGTAACTTTCCGTCAATCAAGGCGCCCGAGATATCTCAG
GCGGGCCCAAAAAACGAAGCACACAATCAAATGCCCACACAGAACCCGAA
CCACCAAAGACCAAACCGAAATCACTGCCCGTAGGTTAGGTTCTTTTAAA
GAGCCTGGTAGAAAGGAACCGGTGTGCGGTTGTTTCCACTTGGCAGGATA
CATATGGGACATTTTTGAGGACCAAACGCGTTCATTCTTTCTTCTTGTCG
CGTGCTACGAAAAAAGTGGCGTTAAAAAGCGCTGGCACAATAAATCCATA
TACCCAAAACAGAGAAACGCCCATGGTGGAAGTGAACTTCCTCCCCTTCT
ACCCCCCCCCCGCATCACGGCGTTCGAATCGAATCGACATAAGATGAGAC
AAGCTGGGAGCCCTCGCGAAGCGCGTGGAATCCGGGCCGCTCTTAAAAAG
AGGTGA
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