mRNA_L-elsbetiae_contig720.16044.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig720.16044.1
Unique NamemRNA_L-elsbetiae_contig720.16044.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig720.16044.1 vs. uniprot
Match: D7G6J0_ECTSI (CXXC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J0_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.200e-34
Identity = 86/148 (58.11%), Postives = 97/148 (65.54%), Query Frame = 1 
Query:    7 GRLRGSQEATHVTTESAGMVLS-YRGGVGSGSD--------VRLSSRSRRSGLKDFLRMGYRCLALLEEIGARPLLSAAADVLSGEGTAAAAAAAEQEVSAGGERLVWCPDTGRLLVEQTARERLAAFDPFHEVPEIEMATSLEPLAE 423
            G  R + EA HV  ESAG+VLS   GGVG  S          R SSRSRRSGLKD L  GYRCLALLEE+GARPLLSAA +VL             QE   GG  LVWC ++GRLL+++  R+RL A DPFHEVPEIEM TSLEPLA+
Sbjct:  722 GLPRPNHEAAHVLAESAGIVLSAVGGGVGGASSSXXXXXXRARPSSRSRRSGLKDLLGKGYRCLALLEELGARPLLSAAGEVL-------------QEGRGGGGGLVWCKESGRLLLKKDVRKRLVAVDPFHEVPEIEMTTSLEPLAK 856
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BLAST of mRNA_L-elsbetiae_contig720.16044.1 vs. uniprot
Match: A0A6H5LAU8_9PHAE (CXXC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU8_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.660e-32
Identity = 81/144 (56.25%), Postives = 94/144 (65.28%), Query Frame = 1 
Query:   16 RGSQEATHVTTESAGMVLSYRGG--------VGSGSDVRLSSRSRRSGLKDFLRMGYRCLALLEEIGARPLLSAAADVLSGEGTAAAAAAAEQEVSAGGERLVWCPDTGRLLVEQTARERLAAFDPFHEVPEIEMATSLEPLAE 423
            R + EA HV+ ESAG+VLS  GG               R SSRSRRSGLK+ L  GYRCLALLEE+GARPLLSAA +VL             QE   GG  LVWC ++GRL +++  R+RLAA DPFHEVPEIEM TSLEPLA+
Sbjct: 1073 RPNHEAAHVSAESAGIVLSAVGGGVXXXXXXXXXXXRARPSSRSRRSGLKNLLGKGYRCLALLEELGARPLLSAAGEVL-------------QEGRGGGGGLVWCKESGRLALKKDVRKRLAAVDPFHEVPEIEMTTSLEPLAK 1203
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig720.16044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6J0_ECTSI1.200e-3458.11CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LAU8_9PHAE1.660e-3256.25CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig720contigL-elsbetiae_contig720:16978..18853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue1.5e-30
Seed eggNOG ortholog2880.D7G6J0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,KOG1343@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size661
Cds size660
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig720.16044.1prot_L-elsbetiae_contig720.16044.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig720 16978..18852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816801.518418-CDS-L-elsbetiae_contig720:16977..170161622816801.518418-CDS-L-elsbetiae_contig720:16977..17016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 16978..17016 +
1691683824.0661483-CDS-L-elsbetiae_contig720:16977..170161691683824.0661483-CDS-L-elsbetiae_contig720:16977..17016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 16978..17016 +
1622816801.5301821-CDS-L-elsbetiae_contig720:17708..180471622816801.5301821-CDS-L-elsbetiae_contig720:17708..18047Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 17709..18047 +
1691683824.0767827-CDS-L-elsbetiae_contig720:17708..180471691683824.0767827-CDS-L-elsbetiae_contig720:17708..18047Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 17709..18047 +
1622816801.5426552-CDS-L-elsbetiae_contig720:18570..188521622816801.5426552-CDS-L-elsbetiae_contig720:18570..18852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 18571..18852 +
1691683824.0848362-CDS-L-elsbetiae_contig720:18570..188521691683824.0848362-CDS-L-elsbetiae_contig720:18570..18852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig720 18571..18852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig720.16044.1

>prot_L-elsbetiae_contig720.16044.1 ID=prot_L-elsbetiae_contig720.16044.1|Name=mRNA_L-elsbetiae_contig720.16044.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
GQGRLRGSQEATHVTTESAGMVLSYRGGVGSGSDVRLSSRSRRSGLKDFL
RMGYRCLALLEEIGARPLLSAAADVLSGEGTAAAAAAAEQEVSAGGERLV
WCPDTGRLLVEQTARERLAAFDPFHEVPEIEMATSLEPLAEEQEQVQERE
QEQEQEVVEEEEEGEGEGEADGSGGRDTPPAQSTSAARKEAATAASPAAA
AATASVGAVVPGALSADRDE
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mRNA from alignment at L-elsbetiae_contig720:16978..18853+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig720.16044.1 ID=mRNA_L-elsbetiae_contig720.16044.1|Name=mRNA_L-elsbetiae_contig720.16044.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1876bp|location=Sequence derived from alignment at L-elsbetiae_contig720:16978..18853+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCAGGGGCGGCTGCGGGGGAGCCAAGAGGCCACACACGTGAGGGAGCT
GTGTGTGCTGTGTGTGTGTGTGCTGTGTGCGTGTGTGTGTGTGTGTATGT
GTGTGTGTGGTGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGGCG
ACGTTTTTGTGTTTGCTTTGTCTTTCGTTCGTTTTTGTTCTTTCTTTCTT
CAAGTCTTGCCTTTTGTTGTCTCTTGTTCTTACAATAGTCGGCGATGGAT
AGCGCTTTAGACATGCGAAAGAAGACATGCGGAAACGTGTAACAAGTGGT
GCATACATACGTATATATATATTTTTTTTTTTTTTTTTTCTTTTTCACGT
TTATTTCCAGTGCTCGATGGGCTCCCTGTCGCGAGGACATCTTGCCAGAG
TATTGAACCGTGGTCACACAGAAAGGAGGATTCCTTTCCCCGCATGCATG
CATATACGCGAGAGGGCAAGCTGCCGTGTTTCTGTTGTTTGTAGCGTATT
TACCACCGTGTTGCACGTCCTGCGCATCGAGGGCGCAAGTACACCGTTGG
GAGAATTGCCGTTCCGACCAAGCGTGCACAGTAGTAGTGCACGGGTTGAT
ATGAGCTGAGGTGACAAGTAGCTGTCGCCGTCAGCACACAGCAACACCAC
CACCGACAACAACAAACGTTACCAACACCATCAACAACGCCGACGAAACG
GAACTGTCAACAACGGGACTGTCAACAACAGGTGACGACGGAGTCTGCCG
GGATGGTGCTCTCTTACAGAGGCGGCGTCGGCAGCGGCAGCGACGTCCGC
CTATCCAGCCGCTCCCGCCGCTCCGGCCTCAAAGACTTCCTCCGTATGGG
TTACCGCTGCCTGGCCCTGCTCGAGGAGATCGGCGCCCGCCCTTTGCTGA
GCGCTGCCGCGGATGTTTTGAGCGGAGAAGGAACGGCGGCGGCGGCGGCA
GCGGCGGAGCAGGAAGTAAGCGCCGGTGGTGAGCGGCTGGTGTGGTGCCC
GGACACCGGCAGGCTGTTGGTGGAGCAGACCGCGAGGGAGCGGCTTGCGG
CCTTCGACCCGTTCCACGAGGTAGATACCACGTATGTTGTTTTGCAGGGG
TTTTGGTGGTGTTGATGGTACCGGTGGTGTCGTTGGGTGGCACTTGATGG
CGGCGTTTCCCGTTGTTGTTGTTCGGCGGTTCTGGTTTATTTTTCCGTTT
TCTGTCGCTGCCTGCGGCTAGCTGATTGTGTGTGTTTTTTTGTTGATGTG
CTCGCTGGCAGTGTCACCCTCTTTCATCTCTAGAACGAGGTAGATGGCTG
CTGTGCCGCAATCGCAAACATACGGAGACTAATAAGGAGAACGGCGAAGG
AAAGGAAAGAGAGACAGTTAGGTTTTTTTCTACTCGGCAGGACCAATACT
TCTGCATCACTGTATTGAACTCTGAATTCAACACGGAGTCCCGTCTCTAA
TGTGGGGAGGTTTCTCTCTTTGATCTCCTGACTATTACTTTTCGAAAACA
ATTACATGTTTTCTGTCGTTGTCCCCCCCCCCCCCCCCCTCCCCCCTGAC
TGACTCATCCACCCCCAAACTACTTTCACACCACCGGCTTCAGGTTCCCG
AGATCGAGATGGCCACCTCTCTCGAGCCGTTGGCGGAAGAACAAGAACAA
GTACAAGAACGAGAGCAAGAGCAAGAGCAGGAAGTAGTTGAAGAAGAAGA
AGAAGGAGAAGGAGAAGGAGAAGCCGACGGCAGCGGCGGCCGAGACACCC
CGCCCGCCCAGTCAACGAGTGCAGCCCGCAAGGAGGCAGCAACTGCGGCC
TCCCCTGCCGCCGCCGCGGCCACCGCCTCCGTAGGTGCCGTTGTCCCTGG
TGCCTTGTCCGCCGACCGTGACGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig720:16978..18853+

>mRNA_L-elsbetiae_contig720.16044.1 ID=mRNA_L-elsbetiae_contig720.16044.1|Name=mRNA_L-elsbetiae_contig720.16044.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig720:16978..18853+ (Laminarionema elsbetiae ELsaHSoW15)
GGGCAGGGGCGGCTGCGGGGGAGCCAAGAGGCCACACACGGGCAGGGGCG
GCTGCGGGGGAGCCAAGAGGCCACACACGTGACGACGGAGTCTGCCGGGA
TGGTGCTCTCTTACAGAGGCGGCGTCGGCAGCGGCAGCGACGTCCGCCTA
TCCAGCCGCTCCCGCCGCTCCGGCCTCAAAGACTTCCTCCGTATGGGTTA
CCGCTGCCTGGCCCTGCTCGAGGAGATCGGCGCCCGCCCTTTGCTGAGCG
CTGCCGCGGATGTTTTGAGCGGAGAAGGAACGGCGGCGGCGGCGGCAGCG
GCGGAGCAGGAAGTAAGCGCCGGTGGTGAGCGGCTGGTGTGGTGCCCGGA
CACCGGCAGGCTGTTGGTGGAGCAGACCGCGAGGGAGCGGCTTGCGGCCT
TCGACCCGTTCCACGAGGTGACGACGGAGTCTGCCGGGATGGTGCTCTCT
TACAGAGGCGGCGTCGGCAGCGGCAGCGACGTCCGCCTATCCAGCCGCTC
CCGCCGCTCCGGCCTCAAAGACTTCCTCCGTATGGGTTACCGCTGCCTGG
CCCTGCTCGAGGAGATCGGCGCCCGCCCTTTGCTGAGCGCTGCCGCGGAT
GTTTTGAGCGGAGAAGGAACGGCGGCGGCGGCGGCAGCGGCGGAGCAGGA
AGTAAGCGCCGGTGGTGAGCGGCTGGTGTGGTGCCCGGACACCGGCAGGC
TGTTGGTGGAGCAGACCGCGAGGGAGCGGCTTGCGGCCTTCGACCCGTTC
CACGAGGTTCCCGAGATCGAGATGGCCACCTCTCTCGAGCCGTTGGCGGA
AGAACAAGAACAAGTACAAGAACGAGAGCAAGAGCAAGAGCAGGAAGTAG
TTGAAGAAGAAGAAGAAGGAGAAGGAGAAGGAGAAGCCGACGGCAGCGGC
GGCCGAGACACCCCGCCCGCCCAGTCAACGAGTGCAGCCCGCAAGGAGGC
AGCAACTGCGGCCTCCCCTGCCGCCGCCGCGGCCACCGCCTCCGTAGGTG
CCGTTGTCCCTGGTGCCTTGTCCGCCGACCGTGACGAGGTTCCCGAGATC
GAGATGGCCACCTCTCTCGAGCCGTTGGCGGAAGAACAAGAACAAGTACA
AGAACGAGAGCAAGAGCAAGAGCAGGAAGTAGTTGAAGAAGAAGAAGAAG
GAGAAGGAGAAGGAGAAGCCGACGGCAGCGGCGGCCGAGACACCCCGCCC
GCCCAGTCAACGAGTGCAGCCCGCAAGGAGGCAGCAACTGCGGCCTCCCC
TGCCGCCGCCGCGGCCACCGCCTCCGTAGGTGCCGTTGTCCCTGGTGCCT
TGTCCGCCGACCGTGACGAG
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