mRNA_L-elsbetiae_contig711.15921.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig711.15921.1
Unique NamemRNA_L-elsbetiae_contig711.15921.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig711.15921.1 vs. uniprot
Match: D7FYW2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYW2_ECTSI)

HSP 1 Score: 370 bits (949), Expect = 3.760e-122
Identity = 192/257 (74.71%), Postives = 219/257 (85.21%), Query Frame = 1 
Query:   16 MKVSMVPTMAVALGLLCGVESFVAPLPVGQRNQCTSSFSAHMIRTGAARSSSSSR-LMMGGFGEPAKKKKPAGVGRGQEAYQRQIKSYNGLIGAGAEGTDIYVHRNGDDKFIFVGKAAWSSGITVEQALQFQRGLILGHVELLEPRWKADPAPMRIFTAPLNSEVEVARNVHDLVKVLGPGKGKDVKVDALTPQEVGLKPELYELNEEYFYVRKLDDGKSPAPPANAMIESMEDLVAKGIVPGKVAVDAAAPEAAAE 783
            MK+S VP+ A+ALGLLC V+SF APL  G + + TSS + HMI +G  RS++SSR +MMGGFG P KKKK  GVGRGQ+AYQRQ+KSY+GL  AGAEG D+YVHR GDDKFIF+GKAAWSSGITV+QALQFQRGLILGHVELLEP WK  PAPMRIFTAP+NSE+EVARN+HDLV+VLGPGKGKDVKVD LTPQEVGL+PELYEL E YFYVRKLDDGK PAPP+  MIE+M++LVAKG+VP K  VDAAAP  A E
Sbjct:    1 MKISAVPSAAIALGLLCDVDSF-APLTAGWQLRQTSS-AWHMIPSGRPRSATSSRVMMMGGFGGPEKKKKVVGVGRGQDAYQRQVKSYHGLTEAGAEGADVYVHREGDDKFIFMGKAAWSSGITVQQALQFQRGLILGHVELLEPMWKDKPAPMRIFTAPINSEIEVARNIHDLVRVLGPGKGKDVKVDKLTPQEVGLRPELYELGEPYFYVRKLDDGKCPAPPSEVMIETMDNLVAKGVVPAKETVDAAAPPPADE 255
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig711.15921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYW2_ECTSI3.760e-12274.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig711contigL-elsbetiae_contig711:17948..22691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue4.7e-07
Seed eggNOG ortholog2850.Phatr45146
Hectar predicted targeting categorysignal peptide
EggNOG OGs2EIZK@1,2SP9S@2759,2XGCX@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_002700.1
Exons4
Model size1773
Cds size771
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig711.15921.1prot_L-elsbetiae_contig711.15921.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig711 17963..21704 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816789.4302-UTR-L-elsbetiae_contig711:17947..179621622816789.4302-UTR-L-elsbetiae_contig711:17947..17962Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig711 17948..17962 +
1691683814.7897768-UTR-L-elsbetiae_contig711:17947..179621691683814.7897768-UTR-L-elsbetiae_contig711:17947..17962Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig711 17948..17962 +
1622816789.4862761-UTR-L-elsbetiae_contig711:21704..226911622816789.4862761-UTR-L-elsbetiae_contig711:21704..22691Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig711 21705..22691 +
1691683814.8444972-UTR-L-elsbetiae_contig711:21704..226911691683814.8444972-UTR-L-elsbetiae_contig711:21704..22691Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig711 21705..22691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816789.4414115-CDS-L-elsbetiae_contig711:17962..182771622816789.4414115-CDS-L-elsbetiae_contig711:17962..18277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig711 17963..18277 +
1691683814.8088443-CDS-L-elsbetiae_contig711:17962..182771691683814.8088443-CDS-L-elsbetiae_contig711:17962..18277Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig711 17963..18277 +
1622816789.4520478-CDS-L-elsbetiae_contig711:19070..191421622816789.4520478-CDS-L-elsbetiae_contig711:19070..19142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig711 19071..19142 +
1691683814.817797-CDS-L-elsbetiae_contig711:19070..191421691683814.817797-CDS-L-elsbetiae_contig711:19070..19142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig711 19071..19142 +
1622816789.463053-CDS-L-elsbetiae_contig711:19985..201561622816789.463053-CDS-L-elsbetiae_contig711:19985..20156Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig711 19986..20156 +
1691683814.8270226-CDS-L-elsbetiae_contig711:19985..201561691683814.8270226-CDS-L-elsbetiae_contig711:19985..20156Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig711 19986..20156 +
1622816789.4737327-CDS-L-elsbetiae_contig711:21491..217041622816789.4737327-CDS-L-elsbetiae_contig711:21491..21704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig711 21492..21704 +
1691683814.8356566-CDS-L-elsbetiae_contig711:21491..217041691683814.8356566-CDS-L-elsbetiae_contig711:21491..21704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig711 21492..21704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig711.15921.1

>prot_L-elsbetiae_contig711.15921.1 ID=prot_L-elsbetiae_contig711.15921.1|Name=mRNA_L-elsbetiae_contig711.15921.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=257bp
MKVSMVPTMAVALGLLCGVESFVAPLPVGQRNQCTSSFSAHMIRTGAARS
SSSSRLMMGGFGEPAKKKKPAGVGRGQEAYQRQIKSYNGLIGAGAEGTDI
YVHRNGDDKFIFVGKAAWSSGITVEQALQFQRGLILGHVELLEPRWKADP
APMRIFTAPLNSEVEVARNVHDLVKVLGPGKGKDVKVDALTPQEVGLKPE
LYELNEEYFYVRKLDDGKSPAPPANAMIESMEDLVAKGIVPGKVAVDAAA
PEAAAE*
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mRNA from alignment at L-elsbetiae_contig711:17948..22691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig711.15921.1 ID=mRNA_L-elsbetiae_contig711.15921.1|Name=mRNA_L-elsbetiae_contig711.15921.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4744bp|location=Sequence derived from alignment at L-elsbetiae_contig711:17948..22691+ (Laminarionema elsbetiae ELsaHSoW15)
TCCTCAGGCTCAGGCATGAAGGTCTCCATGGTGCCGACTATGGCTGTAGC
GCTTGGCCTCTTGTGCGGGGTGGAGAGTTTCGTGGCGCCCTTACCAGTTG
GGCAGCGAAACCAATGTACGAGCTCCTTCTCCGCGCACATGATCCGCACC
GGCGCTGCTCGGTCCAGTAGCAGTAGTCGCTTGATGATGGGCGGGTTTGG
CGAGCCTGCGAAGAAGAAGAAGCCTGCAGGTGTAGGTAGGGGCCAAGAGG
CGTACCAGCGGCAAATTAAGTCATACAACGGGCTTATTGGTGCTGGCGCG
GAAGGGACCGACATTTACGTGCACAGAAATGTAAGTTGATGAACTGGGTG
GGGTGTGTCATGTGGGCAGCAGGTATGTACAATAGTGTGCAGATAGCCAT
GAGGTTATTGGCAACTTCTATTGAACCGGGGGTGAATGGTTCATGGCAAG
ATCGAACAAGCCCGTCTGTACGCCTACGTGGACGGGCCCCGTCTCTGTCA
ACATATGGGTGTGTATGTAGTGTATAGGTACTGTAGTACGTAGAATGCTG
AGATGCGGAGGTTCGGGGCTGGAGGCTCTTTCTTCCTCTGTCCCCGCACA
GCTCCAGGCCATTCAGCGGGCTTTCGTTGCCTCTGACCGTTTGTTTTTTA
TTGTTCGTTTGTATCCAAAATCTCGTCCAAGTTGTGACTCGAGCTTTTGA
AGACACCAAGCTTGAAAGGAAAACAGAGTTAAAGTACAATATTGTTTTTT
GTTGTCTCCGTTCCGATCTCTCCATCCAGTACATATCTCTCTCAAATGTC
CGTACACTAATCCAACACTTGATGCGGTCAATTCCCGTGATAGTAGTCAA
AACACAAGATCCCTTTTCACAGCGAGCTCTCGAGAGAGAGCGCCGCGCGG
CAGGGGATAATGCACATATTTACTTTTTTGAACAAGAAAAACAGAAACGG
AACCTAACCCACCATTGAGATGGGAGGTTGGGGGGGAGGTTTCAACCAGT
ATCCATTCATTTAGCACTGGTTGTCGGGGTGTACGAAACCATGCACTTTG
CGGTCAGACAAAACGAGCAAACCGTTCGCCGCCCCCACGCCCATATACCC
CCCCGCGGCCAATTTACGTGCAGGGTGATGACAAGTTCATTTTCGTGGGA
AAGGCTGCCTGGTCTTCAGGCATCACTGTGGAGCAGGCCTTGCAGGTAAA
TATGTAGAAGTATGTATGTACCATACATGTATATGATGCCCGTTCGGCGT
TCAGACCGGGTACATACATAGCTCAAGTCAAGTACGCCTCTCCTTATGGC
ATCCATGTATGTAGCCCCGGGTTGTTGCGGGTGTTGCGGGAGGGCGCTCC
GTCTGGGTGCCGCGTTGTGCCTTTCGGGCAGCGCTACATAATACGCAGGT
TTTTTGTGCGCCCTTCTCTTGCTTGTTTCGGTGCGTGAGAGGTGGTGGCA
GGGAGTGGGGTGGCACCTTTTGGTGCTGGCCTTATGTGTTCACTGAGTGT
TAGTTAGCCATCCAGGCCACCCGTACCTTTCGAGAGAGTTCGGGGCAGCG
CAAAGGTGCGGTGTGGAGGCGGGTTTCGACTGCACAACGAGGTGTGCGTG
GCGTTTTTGGACTGCGTAAAGCGCAAAAAGTGGCAAGTTTTATGATTTTG
ATGGATTCAAGTTTCGTGCCGCTATTTGTCTCAGGAACCACGACAGTAAA
CGCCAACGTTTCCACATCGACAACGACACTACGCGTCCGCTGTTGGGTAG
TATCCGCCAAGACAGTGCGAACCAGGGGATTAATTGAATACCCCTGAAAT
AGATTGCCTCGGGGGATGGAGGGTCAACGCGTTCCTGCGGCATCCATCGG
CGATAATTTGCGCTACCGAGCAATCATTCCGGGACTGATTTCTCGCATAC
ATACATACGTACTTGCTTATGTGTTGTGCACCCACCCACTGCCCCCCCCC
CCGACGCTGATCATCTGTCCCTCGTGCCATCTCAACACACGCACGTTCTC
CCCCACTTTCTCCCACAACACTACAAACTCATGGTTAGTTTCAGCGAGGG
CTAATCCTAGGCCACGTTGAGCTCCTGGAGCCTAGGTGGAAGGCAGACCC
CGCACCGATGCGCATCTTCACCGCGCCGCTCAACTCCGAGGTCGAGGTGG
CGAGAAACGTGCACGACCTGGTGAAGGTGCTGGGCCCCGGCAAGGGCAAG
GATGTCAAGGTGCGCTGTTGGCTCGTGAGGCCTTTTGTGACTTCGTCGGT
CCGCGGCATGTGGACGACCGCAGCCTGGCACCGCCGTTGTCATCAGGCGA
AGAGAAAAACGGCTGCGTTTTTTGTGGACTGTATATGTAGATAGGCGAGA
ACGTCAAAGGTAACTGTCCTCTCGTATCCCAGTTCTCCAAGCATGCTGTG
ATGGGGAGTAGTGCCACAAGAGTAAGAGTCGTCGCACCCCCAATTTCCAG
AGCTCGATTGTGCAACCACCGTAAAACACTCGCGAGGGCCATCTTTCCGT
AGGCGATTCAGTCGGCATTCGCAACGTGTAGGTTGTTGAGCAATCTTATT
TACATAAGAACGGAGTATACTGTAGCCGTCTGTGCACAACAGTTTGTCCA
AAACATTCCAGGCGGGGATGACAACTTTTCTCTGCACACAGGTGGCTGTT
CTGAAATCCGAAAGTAGATGCCGGCAAACGCCCTGTCTCCAGGCACATTT
CGTGAAGGAAAGTTTTTTTATGTTTTTATTCCTTGCCTTTGTATCAGAGA
AAAACTGGGAAAACTTGTTTGTTTTTACTGAGGTGTGTGGTGTTTGTCGG
TTTCAGATATCTCAACGGATTTGAACCGATCTCGGAATTTGCCAGAGGGG
TGTTATTTATTTTTGAGAACATTTTCCAAGTTGACAAAGATACCGTGGAA
AAGTCGGATCTAGAGGGCCAACTTGTTTTGTTATATATGAAATAAATAAC
TTACCGGTTTCAAAATACGTAGAGTGGGGCGAACGATTCCTCTCATCAAT
CTCCAGAGGGGTATTTTTTTCCTGTCTACGGGAAAAATCTAGTTCTCGAG
ATCTTACACATTTTGTTTCGCAGTCTCTTTTCAGTTTAGTTTAAGGGATG
CAGCAGGTTGTCCGCGGGGCTCCGCAGTATGTAAGGGGGCTCCGTGGAGG
GATATTCCGCCACAAATAGCTCATTTTTTTTTTCATTTTCATAATCAACA
GAACTCCGCAGCTGTCGACGTATCTCGACGAGGCGGTCACCAATATCGTT
GTTTCAGGTCCCAAATACTACGAAGTATTGTTTTTACGAAAGTTATCGCC
CAAAACGCGAGTGGACAAATTGTTTATGCACGAACCACATGTATGAAAAT
CGATCGAAGGGGGTGCGATGACTGGCATTCTTTACGGCACGATATGTCGG
CACGCATGCCTTTTGCTTCTTGCTCCGCTTATGGCACGCAGCATTTGCCA
CCCAGCCCTCTCAGTCAGTGAGTGTCACCCAATCACCCAATGCCTAAATA
ACTAGATAGTCGTTCGACGATCCACCTCATTTTCGCGAACTTAGGTGGAC
GCCTTGACCCCGCAAGAGGTGGGGTTAAAGCCCGAGCTGTACGAGCTTAA
CGAGGAGTACTTCTACGTTAGGAAGCTCGACGACGGCAAGAGCCCTGCGC
CCCCAGCAAACGCAATGATCGAAAGCATGGAGGACCTGGTCGCCAAGGGA
ATTGTGCCCGGCAAGGTGGCGGTGGATGCCGCAGCACCAGAAGCGGCGGC
AGAATAAGCAGTCTGAACCTTGTGGAGTGCTCGCTCGGGTAGCCTGGTTT
TGCGGATGGCTGGTATTTATGTAGATCTTGGCCAAAGCAATTGAGGGTTT
TTGGGTGTTTGAGATGTTTGAGAGGCGTTTTCTGTCGTTTGCCCGGGGAG
GGAGGGAGGGAGGAGTGCAGGCGGCAGCTTCAGCAGCTGCAACAGGAACG
AGCGGTGTCCCCAGGTGGCTGAAGGAGTTCAGAGGCGTGACCCTGCAAAG
CGGTTGTTCTTGATTGTGGCCCGTGATAGATTCTTCTCAAGTGTACTTGT
ATAGCGTTCACTGCTTTTTTTTTCGGAGCTGCTGACTTTTGATCAAATGT
TTCTGAGCCTGGGGCTTTTATGGGGACCCACATGTTTCACACGACCCGTG
GACACATGCTTCTCGCGAACCGCCGCTGGTTTGACGGACACTCGTGCATT
ACCCTTGGGCATGGCTGCGACATGATGGTGTCAAAGGCGACACCTACTTG
TGACAAAGCTGTTATCGTAGTATCTCTCTCCACGTCTCTGGGCTGTAGGC
CCGTACAGAGTTTGTGAAGATACTCTCGCCCGGAGGCAGCGGTACCATGT
GGCTCCGCTGAACTTCCGCTCCTCAGCCGCAAACTTGCTACTCACGTGCG
TGCTGTCTGTCTGTGTTCATGCACTACTACTGTTGTTCTTTGTTTGGTAA
ATCTCCCTGGCTGTTGTGCCACGACGGCAGGTGTCCCGTATCACATCATC
GTTGGATGATCAAGCTTTTTTTTGCCTTCGACTGTTGTTTGAATGGTACA
ATGTTCCTCTTCGGGTTGCATCTTGTCTTGCTGGAGCCTTGGCTTTTTAG
TCAAGAAAGTGCTATACACGCCAGACGAGCGCATTGATTTTTTTTAGAAC
GACGCCATTCTGTTTGTATCAGCTGATGACACCTCCCATCAATCGCAAGG
CGCTTTGCTCAACTTTTTTTGGAAGCGGAAACTACAGCACGTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig711:17948..22691+

>mRNA_L-elsbetiae_contig711.15921.1 ID=mRNA_L-elsbetiae_contig711.15921.1|Name=mRNA_L-elsbetiae_contig711.15921.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1542bp|location=Sequence derived from alignment at L-elsbetiae_contig711:17948..22691+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGTCTCCATGGTGCCGACTATGGCTGTAGCGCTTGGCCTCTTGTG
CGGGGTGGAGAGTTTCGTGGCGCCCTTACCAGTTGGGCAGCGAAACCAAT
GTACGAGCTCCTTCTCCGCGCACATGATCCGCACCGGCGCTGCTCGGTCC
AGTAGCAGTAGTCGCTTGATGATGGGCGGGTTTGGCGAGCCTGCGAAGAA
GAAGAAGCCTGCAGGTGTAGGTAGGGGCCAAGAGGCGTACCAGCGGCAAA
TTAAGTCATACAACGGGCTTATTGGTGCTGGCGCGGAAGGGACCGACATT
TACGTGCACAGAAATATGAAGGTCTCCATGGTGCCGACTATGGCTGTAGC
GCTTGGCCTCTTGTGCGGGGTGGAGAGTTTCGTGGCGCCCTTACCAGTTG
GGCAGCGAAACCAATGTACGAGCTCCTTCTCCGCGCACATGATCCGCACC
GGCGCTGCTCGGTCCAGTAGCAGTAGTCGCTTGATGATGGGCGGGTTTGG
CGAGCCTGCGAAGAAGAAGAAGCCTGCAGGTGTAGGTAGGGGCCAAGAGG
CGTACCAGCGGCAAATTAAGTCATACAACGGGCTTATTGGTGCTGGCGCG
GAAGGGACCGACATTTACGTGCACAGAAATGGTGATGACAAGTTCATTTT
CGTGGGAAAGGCTGCCTGGTCTTCAGGCATCACTGTGGAGCAGGCCTTGC
AGGGTGATGACAAGTTCATTTTCGTGGGAAAGGCTGCCTGGTCTTCAGGC
ATCACTGTGGAGCAGGCCTTGCAGTTTCAGCGAGGGCTAATCCTAGGCCA
CGTTGAGCTCCTGGAGCCTAGGTGGAAGGCAGACCCCGCACCGATGCGCA
TCTTCACCGCGCCGCTCAACTCCGAGGTCGAGGTGGCGAGAAACGTGCAC
GACCTGGTGAAGGTGCTGGGCCCCGGCAAGGGCAAGGATGTCAAGTTTCA
GCGAGGGCTAATCCTAGGCCACGTTGAGCTCCTGGAGCCTAGGTGGAAGG
CAGACCCCGCACCGATGCGCATCTTCACCGCGCCGCTCAACTCCGAGGTC
GAGGTGGCGAGAAACGTGCACGACCTGGTGAAGGTGCTGGGCCCCGGCAA
GGGCAAGGATGTCAAGGTGGACGCCTTGACCCCGCAAGAGGTGGGGTTAA
AGCCCGAGCTGTACGAGCTTAACGAGGAGTACTTCTACGTTAGGAAGCTC
GACGACGGCAAGAGCCCTGCGCCCCCAGCAAACGCAATGATCGAAAGCAT
GGAGGACCTGGTCGCCAAGGGAATTGTGCCCGGCAAGGTGGCGGTGGATG
CCGCAGCACCAGAAGCGGCGGCAGAATAAGTGGACGCCTTGACCCCGCAA
GAGGTGGGGTTAAAGCCCGAGCTGTACGAGCTTAACGAGGAGTACTTCTA
CGTTAGGAAGCTCGACGACGGCAAGAGCCCTGCGCCCCCAGCAAACGCAA
TGATCGAAAGCATGGAGGACCTGGTCGCCAAGGGAATTGTGCCCGGCAAG
GTGGCGGTGGATGCCGCAGCACCAGAAGCGGCGGCAGAATAA
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