mRNA_L-elsbetiae_contig7102.15913.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7102.15913.1
Unique NamemRNA_L-elsbetiae_contig7102.15913.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7102.15913.1 vs. uniprot
Match: A0A6H5JYY6_9PHAE (SQHop_cyclase_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY6_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 8.010e-74
Identity = 103/112 (91.96%), Postives = 107/112 (95.54%), Query Frame = 1
Query:    1 QADGGWGTHIECASTMFGTILSYVSLRLLGAPADDPACARGLAFVRENGGGSMAPSWAKFWMAVLGVYEWEGINSIPAELWLLPRWFPFHPWRMWCHSRMVYLPMSYLYSTR 336
            QADGGWGTHIECASTMFGT+LSY+SLRLLG   +D ACARGL FVRENGGGSMAPSWAKFWMAVLGVYEWEGINS+PAELWLLPRWFPFHPWRMWCHSRMVYLPMSYLYSTR
Sbjct:  221 QADGGWGTHIECASTMFGTVLSYISLRLLGVSVEDGACARGLKFVRENGGGSMAPSWAKFWMAVLGVYEWEGINSVPAELWLLPRWFPFHPWRMWCHSRMVYLPMSYLYSTR 332          
BLAST of mRNA_L-elsbetiae_contig7102.15913.1 vs. uniprot
Match: D8LFF9_ECTSI (Cycloartenol synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFF9_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 1.140e-72
Identity = 103/112 (91.96%), Postives = 107/112 (95.54%), Query Frame = 1
Query:    1 QADGGWGTHIECASTMFGTILSYVSLRLLGAPADDPACARGLAFVRENGGGSMAPSWAKFWMAVLGVYEWEGINSIPAELWLLPRWFPFHPWRMWCHSRMVYLPMSYLYSTR 336
            QADGGWGTHIECASTMFGT+LSY+SLRLLG   +D ACARGL FVRENGGGSMAPSWAKFWMAVLGVYEWEGINS+PAELWLLPRWFPFHPWRMWCHSRMVYLPMSYLYSTR
Sbjct:  221 QADGGWGTHIECASTMFGTVLSYISLRLLGVSVEDGACARGLKFVRENGGGSMAPSWAKFWMAVLGVYEWEGINSVPAELWLLPRWFPFHPWRMWCHSRMVYLPMSYLYSTR 332          
BLAST of mRNA_L-elsbetiae_contig7102.15913.1 vs. uniprot
Match: A0A813LWY9_POLGL (Hypothetical protein (Fragment) n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LWY9_POLGL)

HSP 1 Score: 181 bits (459), Expect = 2.280e-54
Identity = 76/112 (67.86%), Postives = 89/112 (79.46%), Query Frame = 1
Query:    1 QADGGWGTHIECASTMFGTILSYVSLRLLGAPADDPACARGLAFVRENGGGSMAPSWAKFWMAVLGVYEWEGINSIPAELWLLPRWFPFHPWRMWCHSRMVYLPMSYLYSTR 336
            Q DGGWGTH+E  STMFG++L+YV+LRL+GA  D PAC  G  F+RE+GG   APSWAKFW+AVLGVYEWEGI  +P E+WLLP WFP HP R WCH RMVYLPM +LY+ R
Sbjct:  209 QEDGGWGTHVESPSTMFGSVLNYVTLRLVGAAVDSPACIEGRKFMREHGGALYAPSWAKFWLAVLGVYEWEGIAPVPPEMWLLPHWFPLHPGRFWCHCRMVYLPMCWLYARR 320          
BLAST of mRNA_L-elsbetiae_contig7102.15913.1 vs. uniprot
Match: A0A6T5V9R7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A6T5V9R7_9STRA)

HSP 1 Score: 178 bits (451), Expect = 7.880e-53
Identity = 74/112 (66.07%), Postives = 91/112 (81.25%), Query Frame = 1
Query:    1 QADGGWGTHIECASTMFGTILSYVSLRLLGAPADDPACARGLAFVRENGGGSMAPSWAKFWMAVLGVYEWEGINSIPAELWLLPRWFPFHPWRMWCHSRMVYLPMSYLYSTR 336
            Q DGGWGTHIECASTMFGTILSY+SLRLLG  +++     G  F+ ++GG   APSWAKFW+A +GVY+W+GINS+P E+WLLP+WFPFHP ++WCH RMVYLPM Y+Y  R
Sbjct:  191 QEDGGWGTHIECASTMFGTILSYISLRLLGISSNEDFMKLGRKFLLDHGGARYAPSWAKFWLASIGVYDWKGINSVPVEMWLLPQWFPFHPSKLWCHCRMVYLPMGYVYCKR 302          
BLAST of mRNA_L-elsbetiae_contig7102.15913.1 vs. uniprot
Match: A0A482SSA2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSA2_9ARCH)

HSP 1 Score: 184 bits (467), Expect = 2.030e-52
Identity = 77/112 (68.75%), Postives = 92/112 (82.14%), Query Frame = 1
Query:    1 QADGGWGTHIECASTMFGTILSYVSLRLLGAPADDPACARGLAFVRENGGGSMAPSWAKFWMAVLGVYEWEGINSIPAELWLLPRWFPFHPWRMWCHSRMVYLPMSYLYSTR 336
            Q DGGWGTHIECASTMFGT+L+YV+LRLLG  AD+    +G  F+ + GG   APSWAKFW+AV+GVY+W+GINSIP E+WLLPRWFPFHP ++WCH RMVYLPM Y+Y  R
Sbjct:  144 QLDGGWGTHIECASTMFGTVLNYVALRLLGVSADEEYMKKGREFILKWGGALFAPSWAKFWLAVIGVYDWDGINSIPVEMWLLPRWFPFHPGKLWCHCRMVYLPMGYVYCKR 255          
BLAST of mRNA_L-elsbetiae_contig7102.15913.1 vs. uniprot
Match: A0A6U4XWX2_HEMAN (Terpene cyclase/mutase family member n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4XWX2_HEMAN)

HSP 1 Score: 185 bits (470), Expect = 2.310e-52
Identity = 77/112 (68.75%), Postives = 91/112 (81.25%), Query Frame = 1
Query:    1 QADGGWGTHIECASTMFGTILSYVSLRLLGAPADDPACARGLAFVRENGGGSMAPSWAKFWMAVLGVYEWEGINSIPAELWLLPRWFPFHPWRMWCHSRMVYLPMSYLYSTR 336
            QADGGWGTHIE +STMFGT+LSYVSLRLLG P+ D  C     F+R  GG    PSWAKFW+++LGV+EWEG+NSIP+E+WLLP WFPFHP ++WCH RMVYLPM YLY +R
Sbjct:  260 QADGGWGTHIEASSTMFGTVLSYVSLRLLGVPSGDTQCIHAREFIRSKGGAVTCPSWAKFWLSLLGVHEWEGVNSIPSEMWLLPLWFPFHPGKLWCHCRMVYLPMCYLYCSR 371          
BLAST of mRNA_L-elsbetiae_contig7102.15913.1 vs. uniprot
Match: A0A482R400_9EURY (SQHop_cyclase_N domain-containing protein (Fragment) n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A482R400_9EURY)

HSP 1 Score: 172 bits (436), Expect = 2.840e-52
Identity = 73/112 (65.18%), Postives = 86/112 (76.79%), Query Frame = 1
Query:    1 QADGGWGTHIECASTMFGTILSYVSLRLLGAPADDPACARGLAFVRENGGGSMAPSWAKFWMAVLGVYEWEGINSIPAELWLLPRWFPFHPWRMWCHSRMVYLPMSYLYSTR 336
            Q DGGWG HIE  ST+FGTI++YVS+RLLG  A+D A  R   F+ E+GG +  P W KFWMA LGV+EWEG+N IP ELWLLP WFP+HP +MWCH RMVYLPMSY+Y  R
Sbjct:   35 QKDGGWGLHIEGPSTIFGTIMNYVSMRLLGVSAEDAALVRAREFIHEHGGATHLPHWGKFWMATLGVFEWEGVNPIPPELWLLPYWFPYHPAKMWCHCRMVYLPMSYVYGGR 146          
BLAST of mRNA_L-elsbetiae_contig7102.15913.1 vs. uniprot
Match: A0A835ZEP3_9STRA (Terpene cyclase/mutase family member n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP3_9STRA)

HSP 1 Score: 185 bits (469), Expect = 3.400e-52
Identity = 80/112 (71.43%), Postives = 89/112 (79.46%), Query Frame = 1
Query:    1 QADGGWGTHIECASTMFGTILSYVSLRLLGAPADDPACARGLAFVRENGGGSMAPSWAKFWMAVLGVYEWEGINSIPAELWLLPRWFPFHPWRMWCHSRMVYLPMSYLYSTR 336
            Q DGGWGTH+ECASTMFGT L+YV+LRLLGA  D   CA   AF+   GG  M  SWAKFW+A+LGVY W+GINS+PAE+WLLPRW PFHP RMWCHSRMVYLPM YLY  R
Sbjct:  262 QRDGGWGTHVECASTMFGTALNYVALRLLGAAPDAAPCAAARAFLHARGGALMTTSWAKFWLALLGVYGWDGINSVPAEMWLLPRWLPFHPGRMWCHSRMVYLPMCYLYCRR 373          
BLAST of mRNA_L-elsbetiae_contig7102.15913.1 vs. uniprot
Match: A0A7S0VGU1_9CRYP (Terpene cyclase/mutase family member (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VGU1_9CRYP)

HSP 1 Score: 182 bits (463), Expect = 5.920e-52
Identity = 77/112 (68.75%), Postives = 90/112 (80.36%), Query Frame = 1
Query:    1 QADGGWGTHIECASTMFGTILSYVSLRLLGAPADDPACARGLAFVRENGGGSMAPSWAKFWMAVLGVYEWEGINSIPAELWLLPRWFPFHPWRMWCHSRMVYLPMSYLYSTR 336
            QADGGWGTHIE ASTMFGT+LSYVSLRLLG  + D  C     F+R  GG    PSWAKFW+++LGV+EW+G+NSIPAE+WLLP WFPFHP ++WCH RMVYLPM YLY +R
Sbjct:  254 QADGGWGTHIEAASTMFGTVLSYVSLRLLGVSSADTQCMHAREFIRAQGGAVSCPSWAKFWLSLLGVHEWQGVNSIPAEMWLLPLWFPFHPGKLWCHCRMVYLPMCYLYCSR 365          
BLAST of mRNA_L-elsbetiae_contig7102.15913.1 vs. uniprot
Match: A0A7S1CYZ6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CYZ6_CYCTE)

HSP 1 Score: 166 bits (421), Expect = 1.700e-51
Identity = 70/104 (67.31%), Postives = 81/104 (77.88%), Query Frame = 1
Query:    7 DGGWGTHIECASTMFGTILSYVSLRLLGAPADDPACARGLAFVRENGGGSMAPSWAKFWMAVLGVYEWEGINSIPAELWLLPRWFPFHPWRMWCHSRMVYLPMS 318
            DGGWGTHIE  STMFGT+L YV+LRLLG   DDP C +G AF+R+NGG  M  SWAKF + +LG  EW+G NS+P E+WLLP WFPFHP R+WCH RMVYLPM 
Sbjct:    1 DGGWGTHIESPSTMFGTVLMYVALRLLGKDMDDPICVKGRAFIRDNGGAIMTSSWAKFSLCLLGCMEWDGHNSVPPEMWLLPNWFPFHPGRLWCHCRMVYLPMG 104          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7102.15913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYY6_9PHAE8.010e-7491.96SQHop_cyclase_N domain-containing protein n=1 Tax=... [more]
D8LFF9_ECTSI1.140e-7291.96Cycloartenol synthase n=1 Tax=Ectocarpus siliculos... [more]
A0A813LWY9_POLGL2.280e-5467.86Hypothetical protein (Fragment) n=3 Tax=Polarella ... [more]
A0A6T5V9R7_9STRA7.880e-5366.07Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A482SSA2_9ARCH2.030e-5268.75Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6U4XWX2_HEMAN2.310e-5268.75Terpene cyclase/mutase family member n=2 Tax=Hemis... [more]
A0A482R400_9EURY2.840e-5265.18SQHop_cyclase_N domain-containing protein (Fragmen... [more]
A0A835ZEP3_9STRA3.400e-5271.43Terpene cyclase/mutase family member n=1 Tax=Tribo... [more]
A0A7S0VGU1_9CRYP5.920e-5268.75Terpene cyclase/mutase family member (Fragment) n=... [more]
A0A7S1CYZ6_CYCTE1.700e-5167.31Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7102contigL-elsbetiae_contig7102:636..1742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.5
Seed ortholog evalue6.1e-60
Seed eggNOG ortholog2880.D8LFF9
KEGG rclassRC00874,RC01582,RC01850,RC01851
KEGG koko:K01852,ko:K01853,ko:K06045
KEGG ReactionR03199,R03200,R07322,R07323
KEGG Pathwayko00100,ko00909,ko01100,ko01110,ko01130,map00100,map00909,map01100,map01110,map01130
KEGG ModuleM00101
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidosqualene cyclase activity
EggNOG OGsCOG1657@1,KOG0497@2759
EC4.2.1.129,5.4.99.17,5.4.99.7,5.4.99.8
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816788.7457469-CDS-L-elsbetiae_contig7102:635..8481622816788.7457469-CDS-L-elsbetiae_contig7102:635..848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7102 636..848 +
1691683814.319953-CDS-L-elsbetiae_contig7102:635..8481691683814.319953-CDS-L-elsbetiae_contig7102:635..848Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7102 636..848 +
1622816788.7581205-CDS-L-elsbetiae_contig7102:1616..17421622816788.7581205-CDS-L-elsbetiae_contig7102:1616..1742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7102 1617..1742 +
1691683814.3309007-CDS-L-elsbetiae_contig7102:1616..17421691683814.3309007-CDS-L-elsbetiae_contig7102:1616..1742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7102 1617..1742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7102.15913.1prot_L-elsbetiae_contig7102.15913.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7102 636..1742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7102.15913.1

>prot_L-elsbetiae_contig7102.15913.1 ID=prot_L-elsbetiae_contig7102.15913.1|Name=mRNA_L-elsbetiae_contig7102.15913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
QADGGWGTHIECASTMFGTILSYVSLRLLGAPADDPACARGLAFVRENGG
GSMAPSWAKFWMAVLGVYEWEGINSIPAELWLLPRWFPFHPWRMWCHSRM
VYLPMSYLYSTR*
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mRNA from alignment at L-elsbetiae_contig7102:636..1742+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7102.15913.1 ID=mRNA_L-elsbetiae_contig7102.15913.1|Name=mRNA_L-elsbetiae_contig7102.15913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1107bp|location=Sequence derived from alignment at L-elsbetiae_contig7102:636..1742+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGGACGGCGGGTGGGGGACGCACATCGAGTGCGCCTCGACGATGTT CGGCACGATCCTGTCGTACGTCTCGCTCCGGCTCCTCGGGGCCCCCGCAG ACGACCCCGCCTGCGCCAGGGGGCTGGCCTTCGTCAGGGAGAACGGGGGC GGGAGCATGGCGCCCAGCTGGGCCAAGTTTTGGATGGCCGTGCTAGGCGT GTACGAGTGGGAGGTGAGAGTGGCAGAGGGAGGGGGGTAGGGGCACGATG AGAGAGAGATAGGTACAAGGGAGGGGGGTACGCACTTGGCAGAGGAGAGG CATCCGGCTTCTCGTCGAGGCGAGAGAGTGTTTTCGTTTTGGGTGGTTTC GGATGCCTGCTTGCTTTGCGAGCGGACGGAAGGGTGTAAGTGGGAGGCGA GAGATCGAGCGGGCGAGTGAGAGAGAGAAAGATCGAGAGACTCAGCGGGA GAGAGAGAGAGAGAGAGAGAGTGAAAGAGAGAGGAATAAGCCAGCCAGGG AGGCGAAGGGGCACTTGGTACAATATGCGCTCGTTTACACCCTACAGCCC CATCTTGGACTGCTTGATCGTTTCGGTGCGGCGGGCTCTCCATGGCTCGT GTCTCAGCTGCGCGCCGGCCGCGCAAGGCCCCGCCACAATCCGCCACCTT TTAGTTCTGTTTGGGATCGCCCTCGACTGCTGTTGCGGCGGATGCGGTGT GTGGCGGCACACGGCCCTAGATTCTATCGTTGGAGTGCTGGCAATAGATG TATTGTTGGCCGACCTCGCAAATCTAAATCTTTGCTGGGGAGATGTTGAA TTCTTCTGATATGTAGGTTGTTTTTCTGCTCGCTTCGCCAAATATTACGT CTCTGTATGGAATACCGTTTGAACCCCATATCGAGTCTTTGCTCTAGTAT GGGTTAGGTTACATCTTTGATTCTTTGTTATATTTTTAAGAATAAAAAAA ATAAGGAACTCACGAACAAACCGCGCGGCAGGGCATCAACTCCATCCCGG CGGAGCTGTGGCTTCTCCCCCGCTGGTTCCCGTTCCACCCGTGGAGGATG TGGTGCCATTCGAGAATGGTGTACCTTCCCATGAGCTACCTCTACAGCAC AAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig7102:636..1742+

>mRNA_L-elsbetiae_contig7102.15913.1 ID=mRNA_L-elsbetiae_contig7102.15913.1|Name=mRNA_L-elsbetiae_contig7102.15913.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig7102:636..1742+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCGGACGGCGGGTGGGGGACGCACATCGAGTGCGCCTCGACGATGTT
CGGCACGATCCTGTCGTACGTCTCGCTCCGGCTCCTCGGGGCCCCCGCAG
ACGACCCCGCCTGCGCCAGGGGGCTGGCCTTCGTCAGGGAGAACGGGGGC
GGGAGCATGGCGCCCAGCTGGGCCAAGTTTTGGATGGCCGTGCTAGGCGT
GTACGAGTGGGAGCAGGCGGACGGCGGGTGGGGGACGCACATCGAGTGCG
CCTCGACGATGTTCGGCACGATCCTGTCGTACGTCTCGCTCCGGCTCCTC
GGGGCCCCCGCAGACGACCCCGCCTGCGCCAGGGGGCTGGCCTTCGTCAG
GGAGAACGGGGGCGGGAGCATGGCGCCCAGCTGGGCCAAGTTTTGGATGG
CCGTGCTAGGCGTGTACGAGTGGGAGGGCATCAACTCCATCCCGGCGGAG
CTGTGGCTTCTCCCCCGCTGGTTCCCGTTCCACCCGTGGAGGATGTGGTG
CCATTCGAGAATGGTGTACCTTCCCATGAGCTACCTCTACAGCACAAGGT
GAGGCATCAACTCCATCCCGGCGGAGCTGTGGCTTCTCCCCCGCTGGTTC
CCGTTCCACCCGTGGAGGATGTGGTGCCATTCGAGAATGGTGTACCTTCC
CATGAGCTACCTCTACAGCACAAGGTGA
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