mRNA_L-elsbetiae_contig7082.15888.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig7082.15888.1
Unique NamemRNA_L-elsbetiae_contig7082.15888.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig7082.15888.1 vs. uniprot
Match: A0A6H5KGX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGX1_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 7.570e-72
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 1
Query:    1 VAVRVRFDEDKDFEPPQGSLEIIEDNPYFTQQAGKARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNEEITLKGGGTIAAGRLYVKVDHRRDDELGPTLKSGTVGVKLVER 345
            VAVRVRFDE++DFEPPQGSLE+IEDNPYFTQQAGKARWTLSEAEDTRGAGLWVWGLFK+PLYPFLLLQVNN EI LKGG  IA GRLYVKVDHRRDDELGPTLKSGTVGVK+VER
Sbjct:  127 VAVRVRFDEERDFEPPQGSLEVIEDNPYFTQQAGKARWTLSEAEDTRGAGLWVWGLFKEPLYPFLLLQVNNLEIPLKGGAKIAPGRLYVKVDHRRDDELGPTLKSGTVGVKIVER 241          
BLAST of mRNA_L-elsbetiae_contig7082.15888.1 vs. uniprot
Match: A0A836CDS7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDS7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.540e-28
Identity = 58/120 (48.33%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 VAVRVRFDEDKDFEPPQGSLEIIEDNPYFTQQAGK-ARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNEEITLKGGGT------IAAGRLYVKVDHRRDDELGPTLKSGTVGVKLV 339
            +AV VRF E+  FEPPQG +E++E+N Y     G  ARWTLSE  D R   LW+WGLF+   +PFLL Q+  +EI L G G       I AG+LY KV H+ + E G  L++G VGVK  
Sbjct:  122 IAVVVRFVEEPGFEPPQGRVEVLEENRYVRADQGPFARWTLSEDPDDRKDSLWIWGLFRQLPFPFLLFQLEIDEIPLGGTGADGVARVIPAGKLYAKVPHKFEKETGSQLRAGDVGVKYT 241          
BLAST of mRNA_L-elsbetiae_contig7082.15888.1 vs. uniprot
Match: C1EGI5_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EGI5_MICCC)

HSP 1 Score: 105 bits (263), Expect = 5.350e-26
Identity = 50/115 (43.48%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    1 VAVRVRFDEDKDFEPPQGSLEIIEDNPYFTQQAGKARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNEEITL-KGGGTIAAGRLYVKVDHRRDDELGPTLKSGTVGVKLVE 342
            + VR RF  D+ +EPPQGS+EI +D      QAG  RWTL+E  + R AGLW+WGLF++PLYP++LL  +   I + +GG  I  G+L+ +V H R  + G  L  G +  K+ +
Sbjct:   80 ITVRARFVVDEGYEPPQGSIEIEDDQELAFVQAGFHRWTLAEDPNERKAGLWIWGLFEEPLYPYMLLSFDCNRIEVAEGGYHIPKGKLFAEVKHARGSKSGHVLSDGKLSFKVTK 194          
BLAST of mRNA_L-elsbetiae_contig7082.15888.1 vs. uniprot
Match: A0A7S4SSA2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SSA2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.600e-25
Identity = 53/119 (44.54%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    4 AVRVRFDEDKDFEPPQGSLEIIEDNPYFTQQAG----KARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNEEITLKGG--GTIAAGRLYVKVDHRRDDELGPTLKSGTVGVKLVE 342
            +V   F E++ +EPPQG ++ I  +     + G    K+RW LSE  + R  GLWVWGLFK+PLYPF+LLQ+ +EEI L G    TI   +LY +++H RD+ELG  LK+  + V+ +E
Sbjct:   73 SVNAHFIEEEGYEPPQGFIKQIVSDESEENKGGLKITKSRWILSEDPNERKDGLWVWGLFKEPLYPFMLLQLESEEIELPGEEKDTIQPLKLYAQINHSRDEELGVVLKTTILNVRELE 191          
BLAST of mRNA_L-elsbetiae_contig7082.15888.1 vs. uniprot
Match: A0A7S0I175_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I175_9EUKA)

HSP 1 Score: 103 bits (257), Expect = 4.120e-25
Identity = 54/117 (46.15%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    1 VAVRVRFDEDKDFEPPQGSLEIIEDNPYFTQQAG--KARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVN-NEEITLKGGGTIAAGRLYVKVDHRRDDELGPTLKSGTVGVKLVE 342
            + V +RF +++ FEPPQG + +    P  T + G  K RWTLSE  D +   LW+WGLF  PLYPFLLL V   E + L GG TI AG+L+++ +HRRD +    L +GTV  K+ E
Sbjct:   78 LIVTLRFMQEQGFEPPQGLMLVESCLPEGTVELGEQKDRWTLSEDPDDQKDSLWIWGLFSQPLYPFLLLAVTLTEPVELPGGETIPAGKLFLQGEHRRDPDADTLLGAGTVVFKVSE 194          
BLAST of mRNA_L-elsbetiae_contig7082.15888.1 vs. uniprot
Match: A0A7S4C309_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C309_CHRCT)

HSP 1 Score: 103 bits (256), Expect = 1.210e-24
Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 1
Query:    1 VAVRVRFDEDKDFEPPQGSLEIIEDNPYFTQQAGK--ARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNEEITLKGGGTIAAGRLYVKVDHRRDDELGPTLKSGTVGVKLVER 345
            V   VRF  D+ +EPPQG + +    P    + G+   RW LSE  D R   LW+WGLFK+PLYPF+L Q+   EI L  G  I AGRLY++ DHRR    G  L  G V  ++ ++
Sbjct:  114 VTATVRFALDEGYEPPQGLIRVESCLPEGALKLGEMPTRWMLSEDPDDRKDSLWIWGLFKEPLYPFILFQLECSEIALPTGVAIPAGRLYIQADHRRSPTEGVRLGDGKVSYRVAQQ 230          
BLAST of mRNA_L-elsbetiae_contig7082.15888.1 vs. uniprot
Match: A0A7S0NTZ1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NTZ1_9EUKA)

HSP 1 Score: 98.2 bits (243), Expect = 1.310e-23
Identity = 49/116 (42.24%), Postives = 64/116 (55.17%), Query Frame = 1
Query:    1 VAVRVRFDEDKDFEPPQGSLEIIEDNPYFTQQAGKA--RWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNEEITLKGGGTIAAGRLYVKVDHRRDDELGPTLKSGTVGVKLVE 342
            V   VRF E+  +EPPQG + +    P    Q G+   RW LSE  + R   LW+WGLFK+PLYPF+L QV    + L  GG I  G LYV+ +HRR    G  L  G V  ++ +
Sbjct:   23 VTAAVRFAEEAGYEPPQGRIRVESSLPEGALQLGEVSTRWMLSEDPEDRKDSLWIWGLFKEPLYPFILFQVPCLGLELPNGGRIPPGLLYVQAEHRRHPTEGVRLGDGKVSYRVAQ 138          
BLAST of mRNA_L-elsbetiae_contig7082.15888.1 vs. uniprot
Match: A0A7R9TJF9_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TJF9_MICPS)

HSP 1 Score: 95.9 bits (237), Expect = 2.170e-22
Identity = 44/115 (38.26%), Postives = 69/115 (60.00%), Query Frame = 1
Query:    1 VAVRVRFDEDKDFEPPQGSLEIIEDNPYFTQQAGKARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNEEITLKGGGT-IAAGRLYVKVDHRRDDELGPTLKSGTVGVKLVE 342
            V  R  F  D+ +EPPQG ++I+ED+       G  RWTL E  + R AGLW+WGLF++PLYP++LL  +   + ++ GG  + AG+L+ ++ H R  + G  L  G +  K+ +
Sbjct:   52 VDARCVFVVDEGYEPPQGVVQIVEDDDGVFVDGGLHRWTLEEDPNERKAGLWIWGLFEEPLYPYMLLSFDVNRVEVREGGYHVPAGKLFGEMRHARGSKSGHVLSDGRLSFKVTK 166          
BLAST of mRNA_L-elsbetiae_contig7082.15888.1 vs. uniprot
Match: A0A7S2IJE4_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IJE4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.990e-22
Identity = 49/103 (47.57%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   40 EPPQGSLEIIEDNPYFTQQAGKARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNEEITLKG--GGTIAAGRLYVKVDHRRDDELGPTLKSGTVGVKLVE 342
            E   G+L+II           K+RW LSE  D R  GLWVWGLFK+PLYPF+LLQ+  EEI L G     I   +LY ++ H RD E G  LKS T+ V+ +E
Sbjct:    2 EESSGALKII-----------KSRWILSEDPDDRKDGLWVWGLFKEPLYPFMLLQLETEEIKLPGEENDMIKPLKLYAQISHSRDQEKGVELKSATLNVRELE 93          
BLAST of mRNA_L-elsbetiae_contig7082.15888.1 vs. uniprot
Match: A0A7S4JLM2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JLM2_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.770e-21
Identity = 49/120 (40.83%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    7 VRVRFDEDKDFEPPQGSLEIIEDNPYFTQQAGK------ARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNEEITLKG--GGTIAAGRLYVKVDHRRDDELGPTLKSGTVGVKLVE 342
            V  +F E+  +EPPQG +  I       + AGK      + W LSE  D R  GLWVWGLFK+PLYPF+LLQ+  +E+ L G  G +I   +LY +++H R+ E G  L++  + V+ +E
Sbjct:   77 VEAQFVEEVGYEPPQGIVRQILSENEDEEGAGKMLEISNSYWKLSEDPDDRKDGLWVWGLFKEPLYPFMLLQLETKEVALPGEEGDSIKPLKLYAQINHSREKEEGVVLQASALSVRELE 196          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig7082.15888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGX1_9PHAE7.570e-7291.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDS7_9STRA3.540e-2848.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
C1EGI5_MICCC5.350e-2643.48Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A7S4SSA2_9STRA2.600e-2544.54Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S0I175_9EUKA4.120e-2546.15Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S4C309_CHRCT1.210e-2443.59Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S0NTZ1_9EUKA1.310e-2342.24Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7R9TJF9_MICPS2.170e-2238.26Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A7S2IJE4_9STRA4.990e-2247.57Hypothetical protein n=2 Tax=Helicotheca tamesis T... [more]
A0A7S4JLM2_9STRA1.770e-2140.83Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig7082contigL-elsbetiae_contig7082:7813..9542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score225.3
Seed ortholog evalue1.4e-56
Seed eggNOG ortholog2880.D8LBK6
Hectar predicted targeting categoryother localisation
EggNOG OGs2E2US@1,2SA11@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003600.1
Exons3
Model size348
Cds size348
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig7082.15888.1prot_L-elsbetiae_contig7082.15888.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig7082 7813..9542 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.9436007-CDS-L-elsbetiae_contig7082:7812..79381622816785.9436007-CDS-L-elsbetiae_contig7082:7812..7938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7082 7813..7938 -
1691683812.072734-CDS-L-elsbetiae_contig7082:7812..79381691683812.072734-CDS-L-elsbetiae_contig7082:7812..7938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7082 7813..7938 -
1622816785.9566083-CDS-L-elsbetiae_contig7082:8655..88051622816785.9566083-CDS-L-elsbetiae_contig7082:8655..8805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7082 8656..8805 -
1691683812.084374-CDS-L-elsbetiae_contig7082:8655..88051691683812.084374-CDS-L-elsbetiae_contig7082:8655..8805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7082 8656..8805 -
1622816785.9700713-CDS-L-elsbetiae_contig7082:9470..95421622816785.9700713-CDS-L-elsbetiae_contig7082:9470..9542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7082 9471..9542 -
1691683812.0973573-CDS-L-elsbetiae_contig7082:9470..95421691683812.0973573-CDS-L-elsbetiae_contig7082:9470..9542Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig7082 9471..9542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig7082.15888.1

>prot_L-elsbetiae_contig7082.15888.1 ID=prot_L-elsbetiae_contig7082.15888.1|Name=mRNA_L-elsbetiae_contig7082.15888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
VAVRVRFDEDKDFEPPQGSLEIIEDNPYFTQQAGKARWTLSEAEDTRGAG
LWVWGLFKDPLYPFLLLQVNNEEITLKGGGTIAAGRLYVKVDHRRDDELG
PTLKSGTVGVKLVER*
back to top

mRNA from alignment at L-elsbetiae_contig7082:7813..9542-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig7082.15888.1 ID=mRNA_L-elsbetiae_contig7082.15888.1|Name=mRNA_L-elsbetiae_contig7082.15888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1730bp|location=Sequence derived from alignment at L-elsbetiae_contig7082:7813..9542- (Laminarionema elsbetiae ELsaHSoW15)
GTCGCCGTTCGGGTACGATTCGACGAAGACAAGGATTTCGAACCACCGCA GGGCTCCCTGGAGATTATCGAGGTGAGCGCCGCAGAGGGGGCCTACAAGA TTTCGACTTCCTCGGCACCGGATCAGAGAGAACTTGAAGAGACGCCTCAT CCTACTTCCACCCTCTGTGGGAGACTCTCCTCTACGTGTTGTGTGTGTGA GGCGCCTGCTCCCGGGTCCACCTGCGGTCTTGTCCTATTTGCAAGGAGCG CACACACAGCAGTGCGGGGAGAAAAACACGCCTAAACGCGGTGTAGGTCT ACATGTTGGTATTACCCCGTATTTGACAAAGAGCGACACATGCTGGGACA CATTGCACCTTTGCCAGCCAAGGCCTATTTTTTGGATAGATGGGGCTAAA CTACTACTGTCGCGTTCTCATCATCGCCGTTGAGCCCGATTCACAGTTTT TGTTTTTCACGAAATCATGTTTACCGTTTCCCCGGGGTCGGGTAAAACGT TATTTCATGAGAAATGGGGGGTTTTTCCTCCGGCTGTTGTAGTTGGGGTT ACCCATGGTCTCTCGCCGTGTGTGTGGGAATGGCAGGCAGCGAGCTCTTA CCGCGAAAAAAAAAAAAAGTCGAATACACGGGTGGCGATAGAACGTGTAC CTATTGGTGAGAAAGAAAAAATGCTGTGAATCAGGCTTTACTTCAGCACT CAAGCCGCATCTGCTACCTCCCTCCCGCCCTCGACAGGACAATCCGTACT TCACGCAGCAAGCCGGGAAAGCGCGCTGGACCTTGTCTGAAGCCGAGGAC ACCCGAGGGGCGGGGCTTTGGGTCTGGGGCCTGTTCAAGGACCCGCTCTA CCCGTTCCTCTTGTTGCAGGTCAACAACGAGGAGATCGTGAGTACTACAT GCCCTTTGGTCTTGTCCTGTATTCAACCTGCGGTTGTGTGGAAAAGAGTT TAAACGTATCTGCGCTAATTTTGGACTTTTTTCTTGGGAAGGACACATTT TGATGGTGGGGCTCGAACTCGGGACGCTGTCAACCAAAAACCAGCGATCT CTTCGTCGATGCCAAATGTGAGACGGATCGATCGTCTTCGACAGACGGTG GAGGGGTATTACGCCTAAAAAAAGGGTGACTGACCTCGCACAATGGCGGT GATATCACCGGTCAAAGTCTCCACTCGCCCACAGCACATATTATCGCCTC CGGCTTGCGCACTGAACGTTAGTACTAGACACATTACCACGGTGGTGTGT GTGGTATTGCAGGTATTTCGGGTTTTTACTTTGGGTGTTGGGGCCCCTTG GCGGCCGCGTGCCTACTTTCGCATCCCCACACCCTTCCCTGTCCGTGTGT GGGTGCTTCGCGCTAAGCAGCAGAGCAGCTCTTCTTACGCCAGCATGGTA CAAGTGGGTGCTGCGTCTTTGCAGTGCGGATATCAAACGCAGGCCGCGCC GTTGGCGTTGTTTGATGTACACCCTTAACTGCTGTCCAACGTGATCGCTC CGCTGAAGTCACGAAAAGAGGCAGGAACGCGCGATTTTTGTTCTTTTCGA GCCATGGTTAAACACCGTCCCGCCCTCGCGGTTGTACCGATTTGCTGCCC ACAGACTCTTAAGGGGGGTGGGACGATTGCGGCGGGCAGGCTGTATGTGA AGGTGGATCACAGGCGAGACGACGAGCTCGGGCCGACGCTTAAGAGCGGG ACTGTTGGAGTGAAGTTGGTCGAAAGGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig7082:7813..9542-

>mRNA_L-elsbetiae_contig7082.15888.1 ID=mRNA_L-elsbetiae_contig7082.15888.1|Name=mRNA_L-elsbetiae_contig7082.15888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig7082:7813..9542- (Laminarionema elsbetiae ELsaHSoW15)
GTCGCCGTTCGGGTACGATTCGACGAAGACAAGGATTTCGAACCACCGCA
GGGCTCCCTGGAGATTATCGAGGTCGCCGTTCGGGTACGATTCGACGAAG
ACAAGGATTTCGAACCACCGCAGGGCTCCCTGGAGATTATCGAGGACAAT
CCGTACTTCACGCAGCAAGCCGGGAAAGCGCGCTGGACCTTGTCTGAAGC
CGAGGACACCCGAGGGGCGGGGCTTTGGGTCTGGGGCCTGTTCAAGGACC
CGCTCTACCCGTTCCTCTTGTTGCAGGTCAACAACGAGGAGATCGACAAT
CCGTACTTCACGCAGCAAGCCGGGAAAGCGCGCTGGACCTTGTCTGAAGC
CGAGGACACCCGAGGGGCGGGGCTTTGGGTCTGGGGCCTGTTCAAGGACC
CGCTCTACCCGTTCCTCTTGTTGCAGGTCAACAACGAGGAGATCACTCTT
AAGGGGGGTGGGACGATTGCGGCGGGCAGGCTGTATGTGAAGGTGGATCA
CAGGCGAGACGACGAGCTCGGGCCGACGCTTAAGAGCGGGACTGTTGGAG
TGAAGTTGGTCGAAAGGTGAACTCTTAAGGGGGGTGGGACGATTGCGGCG
GGCAGGCTGTATGTGAAGGTGGATCACAGGCGAGACGACGAGCTCGGGCC
GACGCTTAAGAGCGGGACTGTTGGAGTGAAGTTGGTCGAAAGGTGA
back to top