mRNA_L-elsbetiae_contig696.15733.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig696.15733.1
Unique NamemRNA_L-elsbetiae_contig696.15733.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig696.15733.1 vs. uniprot
Match: A0A6H5JJQ7_9PHAE (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJQ7_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 6.830e-8
Identity = 56/135 (41.48%), Postives = 67/135 (49.63%), Query Frame = 1 
Query:  109 RSPLSEVTEDRRHSVNNSTP-DFPPSPHAPPAXXXXXXXXXXXXXXXXXXXAAYEKGPRKPPRLSSDADEVESVRLLSPSTSPPK--TRNVAGS------PHPSRFPGRGRPASKIPSPMSFSEKLAAAESDSDA 486
            RSPL+EVTEDRRHSVN++ P     SP A  A                   AA  K   +   LSS+ D+  +   L P    P   T N AGS      P P  FPG GRPAS IPS  SFS+ LA AE+++ A
Sbjct:  964 RSPLTEVTEDRRHSVNSNPPLSRSGSPIAAAA-------------------AARRKEQERTHGLSSEGDKAVTAAWLLPLPLTPSSNTENDAGSSSPRSSPPPGSFPGLGRPASTIPSMASFSDALADAETENTA 1079
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig696.15733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJQ7_9PHAE6.830e-841.48CAP-Gly domain-containing protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig696contigL-elsbetiae_contig696:7806..9074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size720
Cds size717
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig696.15733.1prot_L-elsbetiae_contig696.15733.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig696 7808..9074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816771.1911883-CDS-L-elsbetiae_contig696:7807..82091622816771.1911883-CDS-L-elsbetiae_contig696:7807..8209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig696 7808..8209 -
1691683800.8616629-CDS-L-elsbetiae_contig696:7807..82091691683800.8616629-CDS-L-elsbetiae_contig696:7807..8209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig696 7808..8209 -
1622816771.2027247-CDS-L-elsbetiae_contig696:8541..88181622816771.2027247-CDS-L-elsbetiae_contig696:8541..8818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig696 8542..8818 -
1691683800.8736935-CDS-L-elsbetiae_contig696:8541..88181691683800.8736935-CDS-L-elsbetiae_contig696:8541..8818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig696 8542..8818 -
1622816771.2140234-CDS-L-elsbetiae_contig696:9036..90741622816771.2140234-CDS-L-elsbetiae_contig696:9036..9074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig696 9037..9074 -
1691683800.8939788-CDS-L-elsbetiae_contig696:9036..90741691683800.8939788-CDS-L-elsbetiae_contig696:9036..9074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig696 9037..9074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig696.15733.1

>prot_L-elsbetiae_contig696.15733.1 ID=prot_L-elsbetiae_contig696.15733.1|Name=mRNA_L-elsbetiae_contig696.15733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=239bp
DSNAGVEGCGDARPKAIEAISSSHEPSECRSPSSEPRSPLSEVTEDRRHS
VNNSTPDFPPSPHAPPASNSTTITTTAATTAAITTTAAYEKGPRKPPRLS
SDADEVESVRLLSPSTSPPKTRNVAGSPHPSRFPGRGRPASKIPSPMSFS
EKLAAAESDSDAAEIVLAAAAAVASSGPPAPAAPRDAVAESAAVAPAAAT
AAAWSEAAPAAVGAGGGAGVGTGGATRGEEAPADVGTKA
back to top

mRNA from alignment at L-elsbetiae_contig696:7806..9074-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig696.15733.1 ID=mRNA_L-elsbetiae_contig696.15733.1|Name=mRNA_L-elsbetiae_contig696.15733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1269bp|location=Sequence derived from alignment at L-elsbetiae_contig696:7806..9074- (Laminarionema elsbetiae ELsaHSoW15)
GACAGCAACGCTGGGGTTGAAGGCTGCGGCGACGCCAGGTGAGCATCGAA
AACTTCGATGAAAGAAATAGAGCATACCGCAACCCACCCCTCAGGACCAC
TTTTGAGCACATCGCCGACAGGTGAGACTCTTTCACCCGAACCGTTCTGC
CCCATACAAAAGAAGAGCCCGCTCCCCTTTTCTTTTCCGCGTCCTGCCGC
CCACCGACGCTTTATTCGCGCGCCCTCTGTACGTCGTCCGCCCCGTCCGC
CACCAGGCCGAAGGCGATCGAGGCCATCTCTTCCTCGCACGAGCCATCCG
AATGCCGCTCCCCGTCCTCGGAGCCGCGATCTCCTCTGTCCGAGGTTACC
GAGGACAGGAGACACTCCGTCAACAACAGCACCCCAGACTTTCCGCCCTC
ACCGCACGCCCCGCCTGCCTCCAACTCCACCACCATCACAACCACCGCAG
CCACCACCGCAGCCATCACTACCACCGCCGCCTACGAGAAGGGGCCCCGG
AAGCCACCTCGCCTTTCTTCGGATGCGGACGAGGTGCTTGGCCGTGCAAA
ACATTTTTTTTTTTAGCTTTTGAAACGCCTGCATGTTGTTATGTGTGGTG
TTGCTGTGTCTCGTGTTTCCGTTGATGCTGGCGCCGTTGCTATCCATCCC
CACTCTGAATCGGCCTGCCTGGCCGCCACTCGTCCCTTTTGCGGCTCTTA
GCACCTGATCGCACTTGTTTCTAGAACTTGGTTTGACATTGTTTTCGGTT
TTCAGAGTCCTAAAGATGCAGCCGCCAATAGAATACACCCGTTCTTTTGT
CCTTTTATTTTTTTTATATTGTCCCTCTCTCACCCTTTTTTCATTAATTC
CTATGGCCCTCGCAGGTCGAGAGCGTGCGCCTTCTGTCGCCATCGACCTC
GCCCCCGAAGACGAGGAACGTGGCGGGATCGCCTCACCCTTCGAGGTTTC
CCGGCCGCGGGCGCCCCGCCAGCAAGATCCCCTCGCCGATGTCATTCTCC
GAAAAGCTCGCGGCGGCCGAGAGCGACAGCGATGCCGCCGAGATCGTGCT
CGCCGCCGCTGCCGCCGTTGCTTCATCTGGCCCCCCCGCACCGGCTGCTC
CCCGGGATGCGGTCGCTGAGTCTGCCGCTGTTGCTCCCGCTGCCGCGACG
GCGGCCGCATGGTCCGAGGCCGCTCCTGCTGCCGTGGGTGCCGGCGGCGG
CGCTGGTGTCGGCACGGGCGGTGCCACTCGAGGCGAAGAAGCGCCGGCGG
ACGTTGGCACAAAGGCAAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig696:7806..9074-

>mRNA_L-elsbetiae_contig696.15733.1 ID=mRNA_L-elsbetiae_contig696.15733.1|Name=mRNA_L-elsbetiae_contig696.15733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1434bp|location=Sequence derived from alignment at L-elsbetiae_contig696:7806..9074- (Laminarionema elsbetiae ELsaHSoW15)
GACAGCAACGCTGGGGTTGAAGGCTGCGGCGACGCCAGGACAGCAACGCT
GGGGTTGAAGGCTGCGGCGACGCCAGGCCGAAGGCGATCGAGGCCATCTC
TTCCTCGCACGAGCCATCCGAATGCCGCTCCCCGTCCTCGGAGCCGCGAT
CTCCTCTGTCCGAGGTTACCGAGGACAGGAGACACTCCGTCAACAACAGC
ACCCCAGACTTTCCGCCCTCACCGCACGCCCCGCCTGCCTCCAACTCCAC
CACCATCACAACCACCGCAGCCACCACCGCAGCCATCACTACCACCGCCG
CCTACGAGAAGGGGCCCCGGAAGCCACCTCGCCTTTCTTCGGATGCGGAC
GAGGCCGAAGGCGATCGAGGCCATCTCTTCCTCGCACGAGCCATCCGAAT
GCCGCTCCCCGTCCTCGGAGCCGCGATCTCCTCTGTCCGAGGTTACCGAG
GACAGGAGACACTCCGTCAACAACAGCACCCCAGACTTTCCGCCCTCACC
GCACGCCCCGCCTGCCTCCAACTCCACCACCATCACAACCACCGCAGCCA
CCACCGCAGCCATCACTACCACCGCCGCCTACGAGAAGGGGCCCCGGAAG
CCACCTCGCCTTTCTTCGGATGCGGACGAGGTCGAGAGCGTGCGCCTTCT
GTCGCCATCGACCTCGCCCCCGAAGACGAGGAACGTGGCGGGATCGCCTC
ACCCTTCGAGGTTTCCCGGCCGCGGGCGCCCCGCCAGCAAGATCCCCTCG
CCGATGTCATTCTCCGAAAAGCTCGCGGCGGCCGAGAGCGACAGCGATGC
CGCCGAGATCGTGCTCGCCGCCGCTGCCGCCGTTGCTTCATCTGGCCCCC
CCGCACCGGCTGCTCCCCGGGATGCGGTCGCTGAGTCTGCCGCTGTTGCT
CCCGCTGCCGCGACGGCGGCCGCATGGTCCGAGGCCGCTCCTGCTGCCGT
GGGTGCCGGCGGCGGCGCTGGTGTCGGCACGGGCGGTGCCACTCGAGGCG
AAGAAGCGCCGGCGGACGTTGGCACAAAGGCAGTCGAGAGCGTGCGCCTT
CTGTCGCCATCGACCTCGCCCCCGAAGACGAGGAACGTGGCGGGATCGCC
TCACCCTTCGAGGTTTCCCGGCCGCGGGCGCCCCGCCAGCAAGATCCCCT
CGCCGATGTCATTCTCCGAAAAGCTCGCGGCGGCCGAGAGCGACAGCGAT
GCCGCCGAGATCGTGCTCGCCGCCGCTGCCGCCGTTGCTTCATCTGGCCC
CCCCGCACCGGCTGCTCCCCGGGATGCGGTCGCTGAGTCTGCCGCTGTTG
CTCCCGCTGCCGCGACGGCGGCCGCATGGTCCGAGGCCGCTCCTGCTGCC
GTGGGTGCCGGCGGCGGCGCTGGTGTCGGCACGGGCGGTGCCACTCGAGG
CGAAGAAGCGCCGGCGGACGTTGGCACAAAGGCA
back to top