mRNA_L-elsbetiae_contig69.15665.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig69.15665.1
Unique NamemRNA_L-elsbetiae_contig69.15665.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig69.15665.1 vs. uniprot
Match: D7G0S2_ECTSI (Periplasmic sensor diguanylate cyclase/phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S2_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 2.430e-37
Identity = 69/123 (56.10%), Postives = 80/123 (65.04%), Query Frame = 1
Query:    1 MADPSELRLAYNQKKIVRDVIDGSADVGFVRTDMVERMDAEGEANLSDVSFLFVREDIAASGFPFPSATDLVPEWPLQVLPHVPADLSKEVVRALLRLNQTHEAAVAGAYSTWDAPLSYSSLR 369
            MAD  E+R  YNQ+KIV DVI+G+ DVGFVRTDMV+ MDA                             DLVPEWPLQ  PHVP+DL KEVVRAL+ +N+THEAAV+G YSTWD PLSY+ LR
Sbjct:    1 MADTEEVRFTYNQEKIVYDVINGNIDVGFVRTDMVQLMDA----------------------------ADLVPEWPLQAFPHVPSDLVKEVVRALMLINETHEAAVSGGYSTWDVPLSYADLR 95          
BLAST of mRNA_L-elsbetiae_contig69.15665.1 vs. uniprot
Match: D7G0Y8_ECTSI (Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y8_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 6.980e-37
Identity = 72/123 (58.54%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    1 MADPSELRLAYNQKKIVRDVIDGSADVGFVRTDMVERMDAEGEANLSDVSFLFVREDIAASGFPFPSATDLVPEWPLQVLPHVPADLSKEVVRALLRLNQTHEAAVAGAYSTWDAPLSYSSLR 369
            MAD  E+R AYNQKKIV DVI+ + DVGFVRTDMVERMDA                             DLVPEWPLQ L HVP+DL+KEVV ALL +N+THEAAV+G YSTWD PLSY+ LR
Sbjct:  152 MADTEEVRFAYNQKKIVYDVINENVDVGFVRTDMVERMDA----------------------------ADLVPEWPLQALSHVPSDLAKEVVGALLLINETHEAAVSGGYSTWDVPLSYADLR 246          
BLAST of mRNA_L-elsbetiae_contig69.15665.1 vs. uniprot
Match: A0A7S3YSR5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YSR5_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 7.860e-28
Identity = 63/127 (49.61%), Postives = 81/127 (63.78%), Query Frame = 1
Query:    1 MADPSELRLAYNQKKIVRDVIDGSADVGFVRTDMVERMDAEGEANLSDVSFLFVREDIAASGFPFPS--ATDLVPEWPLQVLPHVPADLS--KEVVRALLRLNQTHEAAVAGAYSTWDAPLSYSSLR 369
            M DP+++R A+NQKKIV DV  G  DVGFVRTDM+E MDA GE +LS    +  +++I   G PFP   +T L PEW L  LPH+ +D    +EV+ AL+R N +   + A  YSTW  PLSY  LR
Sbjct:  191 MVDPAQVRFAFNQKKIVHDVRRGDVDVGFVRTDMIEGMDANGETSLSYFKVIH-KQNITYEGSPFPFQISTRLYPEWSLGALPHMNSDYKVVEEVINALMRTNSSSNCSKAAGYSTWQHPLSYMPLR 316          
BLAST of mRNA_L-elsbetiae_contig69.15665.1 vs. uniprot
Match: A0A7S0DIN8_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DIN8_9EUKA)

HSP 1 Score: 115 bits (287), Expect = 2.740e-27
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 1
Query:    1 MADPSELRLAYNQKKIVRDVIDGSADVGFVRTDMVERMDAEGEANLSDVSFLFVREDIAASG--FPFPSATDLVPEWPLQVLPHVPAD--LSKEVVRALLRLNQTHEAAVAGAYSTWDAPLSYSSLR 369
            M  P ++R A+NQKKIV DV++G+ADVGFVRTDM+E M ++GE N+S    +  ++++   G  FPF S+T+L PEW L +LPHV  D  +S+ V  AL+ +++ H AA  G YSTW  PLSY  L 
Sbjct:  184 MTLPKQVRFAFNQKKIVLDVLNGNADVGFVRTDMIEGMASKGEVNISSFKVIH-QQNMTYEGRRFPFLSSTELYPEWSLGMLPHVGIDYMVSERVAFALMDIHKDHWAAKNGTYSTWQPPLSYMRLN 309          
BLAST of mRNA_L-elsbetiae_contig69.15665.1 vs. uniprot
Match: A0A7S0MS93_9CRYP (Guanylate cyclase (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MS93_9CRYP)

HSP 1 Score: 102 bits (254), Expect = 7.710e-23
Identity = 56/122 (45.90%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 MADPSE-LRLAYNQKKIVRDVIDGSADVGFVRTDMVERMDAEGEANLSDVSFLFVREDIAASGFPFPSATDLVPEWPLQVLPHVPADLSKEVVRALLRLNQTHEAAVAGAYSTWDAPLSYSS 363
            + DP++ + + Y+Q K+V +V+ G ADVG VRT  +E M A+     S    LF   ++ A+ +PFP  T L PEWPL     V  DL  EV  AL+R+N +H AA AGAYS WD P+SYSS
Sbjct:   22 LVDPAQVIFVGYDQSKVVEEVLLGRADVGLVRTGYIEGMVAQNRTRQS----LFKYINVQAAEYPFPVCTALYPEWPLAATRGVDRDLVVEVAAALMRINASHPAAFAGAYSAWDPPMSYSS 139          
BLAST of mRNA_L-elsbetiae_contig69.15665.1 vs. uniprot
Match: A0A812RNW9_9DINO (TtrS protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RNW9_9DINO)

HSP 1 Score: 97.1 bits (240), Expect = 6.180e-21
Identity = 54/128 (42.19%), Postives = 78/128 (60.94%), Query Frame = 1
Query:    1 MADPSELRLAYNQKKIVRDVIDGSADVGFVRTDMVERMDAEGEANLSDVSFLFVREDIAASGFPFPSATDLVPEWPLQVLPHVPADLSKEVVRALLRLN------QTHEAAVAGAYSTWDAPLSYSSL 366
            M D   L  A+NQ KIV+DV  G ADVGFVRTD+++R  A   AN +   +  V   IA + FPF  +TD  PEWP+  LPHV A++++ V R+L+ L+      +  E A+AG +++W  P++Y  L
Sbjct:  646 MTDVPRLVFAFNQNKIVQDVELGLADVGFVRTDLIDRNVA---ANKTKWEYFRVIGQIADTDFPFARSTDFTPEWPIGALPHVHAEVTELVARSLMSLDRFSPDPELSEPAIAGNFASWSTPMNYFGL 770          
BLAST of mRNA_L-elsbetiae_contig69.15665.1 vs. uniprot
Match: A0A812P169_9DINO (TtrS protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812P169_9DINO)

HSP 1 Score: 96.7 bits (239), Expect = 8.350e-21
Identity = 54/128 (42.19%), Postives = 78/128 (60.94%), Query Frame = 1
Query:    1 MADPSELRLAYNQKKIVRDVIDGSADVGFVRTDMVERMDAEGEANLSDVSFLFVREDIAASGFPFPSATDLVPEWPLQVLPHVPADLSKEVVRALLRLN------QTHEAAVAGAYSTWDAPLSYSSL 366
            M D  +L  A+NQ KIV+DV  G ADVGFVRTD+++R  A   AN +   +  V   IA S FPF  +TD  PEWP+  LPHV A++++ V  +L+ L+      +  E A+AG +++W  P++Y  L
Sbjct:  181 MTDVPQLIFAFNQNKIVQDVELGLADVGFVRTDLIDRNVA---ANKTKWEYFRVIGQIADSDFPFARSTDFTPEWPIGALPHVHAEVTELVASSLMSLDRFSPDPELSEPAIAGNFASWSTPMNYFGL 305          
BLAST of mRNA_L-elsbetiae_contig69.15665.1 vs. uniprot
Match: UPI0003B3BB6D (diguanylate cyclase n=1 Tax=Leucothrix mucor TaxID=45248 RepID=UPI0003B3BB6D)

HSP 1 Score: 94.0 bits (232), Expect = 6.060e-20
Identity = 51/111 (45.95%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   37 QKKIVRDVIDGSADVGFVRTDMVERMDAEGEANLSDVSFLFVREDIAASGFPFPSATDLVPEWPLQVLPHVPADLSKEVVRALLRLNQTHEAAVAGAYSTWDAPLSYSSLR 369
            Q+KIV  V DG  D G VRTDM+ERM A+G+ NL D   L  R+    +G+PF  +T L PEWP    P    +LS  V RAL+ +     AAV+G Y  W  PLSY+S+ 
Sbjct:  186 QEKIVISVRDGLVDAGSVRTDMLERMAADGQINLDDFRVLGERK---TAGYPFKHSTRLYPEWPFAKFPKASNELSNSVARALMDIKPADAAAVSGKYVGWTVPLSYNSVH 293          
BLAST of mRNA_L-elsbetiae_contig69.15665.1 vs. uniprot
Match: A0A317CC87_9GAMM (GGDEF domain-containing protein n=1 Tax=Leucothrix arctica TaxID=1481894 RepID=A0A317CC87_9GAMM)

HSP 1 Score: 92.4 bits (228), Expect = 2.190e-19
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   34 NQKKIVRDVIDGSADVGFVRTDMVERMDAEGEANLSDVSFLFVREDIAASGFPFPSATDLVPEWPLQVLPHVPADLSKEVVRALLRLNQTHEAAVAGAYSTWDAPLSYSSLR 369
            +Q+KIV  V DG  D G VRTDM+ERM AEGE +L+    L  R+     GFPF  +T L PEWPL + P+V   L+K+V   L+ +     AA+ G Y+ W+  L+Y S+ 
Sbjct:  185 DQEKIVFSVRDGLVDAGVVRTDMLERMAAEGEIDLNTFRVLGERK---TEGFPFKHSTKLYPEWPLAIFPNVTDKLAKDVASVLMDIKPEDNAAIKGKYAGWNVSLNYQSVH 293          
BLAST of mRNA_L-elsbetiae_contig69.15665.1 vs. uniprot
Match: A0A813BBC4_9DINO (TtrS protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813BBC4_9DINO)

HSP 1 Score: 90.1 bits (222), Expect = 1.600e-18
Identity = 51/128 (39.84%), Postives = 73/128 (57.03%), Query Frame = 1
Query:    1 MADPSELRLAYNQKKIVRDVIDGSADVGFVRTDMVERMDAEGEANLSDVSFLFVREDIAASGFPFPSATDLVPEWPLQVLPHVPADLSKEVVRALLRLN------QTHEAAVAGAYSTWDAPLSYSSL 366
            M D   L  A+NQ KIV+DV  G ADVGFVRTD+++R  A    NL+   +  V   I  S FPF  +T   PEWP+  LPHV  ++ + V  +L+ L+      +  E A+AG +++W  P++Y  L
Sbjct:  141 MTDVPRLTFAFNQNKIVQDVELGLADVGFVRTDLIDRNVAN---NLTKWEYFRVIGQIPDSDFPFARSTAFTPEWPIGALPHVTDEVKELVASSLMALDRFSPDPELSEPAIAGNFASWSTPMNYFGL 265          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig69.15665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0S2_ECTSI2.430e-3756.10Periplasmic sensor diguanylate cyclase/phosphodies... [more]
D7G0Y8_ECTSI6.980e-3758.54Diguanylate cyclase/phosphodiesterase with PAS/PAC... [more]
A0A7S3YSR5_9EUKA7.860e-2849.61Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S0DIN8_9EUKA2.740e-2748.82Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S0MS93_9CRYP7.710e-2345.90Guanylate cyclase (Fragment) n=1 Tax=Cryptomonas c... [more]
A0A812RNW9_9DINO6.180e-2142.19TtrS protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A812P169_9DINO8.350e-2142.19TtrS protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
UPI0003B3BB6D6.060e-2045.95diguanylate cyclase n=1 Tax=Leucothrix mucor TaxID... [more]
A0A317CC87_9GAMM2.190e-1943.75GGDEF domain-containing protein n=1 Tax=Leucothrix... [more]
A0A813BBC4_9DINO1.600e-1839.84TtrS protein (Fragment) n=1 Tax=Symbiodinium necro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig69contigL-elsbetiae_contig69:41915..43418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue2.7e-29
Seed eggNOG ortholog2880.D7G0Y8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ABC transporter, phosphonate, periplasmic substrate-binding protein
EggNOG OGs2CY75@1,2S2HA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size372
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig69.15665.1prot_L-elsbetiae_contig69.15665.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig69 41915..43418 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816764.3460877-CDS-L-elsbetiae_contig69:41914..420781622816764.3460877-CDS-L-elsbetiae_contig69:41914..42078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig69 41915..42078 -
1691683795.7363634-CDS-L-elsbetiae_contig69:41914..420781691683795.7363634-CDS-L-elsbetiae_contig69:41914..42078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig69 41915..42078 -
1622816764.3565025-CDS-L-elsbetiae_contig69:42372..424561622816764.3565025-CDS-L-elsbetiae_contig69:42372..42456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig69 42373..42456 -
1691683795.7493982-CDS-L-elsbetiae_contig69:42372..424561691683795.7493982-CDS-L-elsbetiae_contig69:42372..42456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig69 42373..42456 -
1622816764.3681822-CDS-L-elsbetiae_contig69:43121..432001622816764.3681822-CDS-L-elsbetiae_contig69:43121..43200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig69 43122..43200 -
1691683795.7621338-CDS-L-elsbetiae_contig69:43121..432001691683795.7621338-CDS-L-elsbetiae_contig69:43121..43200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig69 43122..43200 -
1622816764.3786778-CDS-L-elsbetiae_contig69:43373..434181622816764.3786778-CDS-L-elsbetiae_contig69:43373..43418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig69 43374..43418 -
1691683795.7727582-CDS-L-elsbetiae_contig69:43373..434181691683795.7727582-CDS-L-elsbetiae_contig69:43373..43418Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig69 43374..43418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig69.15665.1

>prot_L-elsbetiae_contig69.15665.1 ID=prot_L-elsbetiae_contig69.15665.1|Name=mRNA_L-elsbetiae_contig69.15665.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MADPSELRLAYNQKKIVRDVIDGSADVGFVRTDMVERMDAEGEANLSDVS
FLFVREDIAASGFPFPSATDLVPEWPLQVLPHVPADLSKEVVRALLRLNQ
THEAAVAGAYSTWDAPLSYSSLR*
back to top

mRNA from alignment at L-elsbetiae_contig69:41915..43418-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig69.15665.1 ID=mRNA_L-elsbetiae_contig69.15665.1|Name=mRNA_L-elsbetiae_contig69.15665.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1504bp|location=Sequence derived from alignment at L-elsbetiae_contig69:41915..43418- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGACCCTTCCGAACTTCGGCTAGCGTACAACCAAAAAAAGGTGGG TCGGTTTCAAATGTTGCTGTTGCTGCTGTTTCGATCTGTGTGCGCCCTTG TACCGGCGCCATCCCCGGCGAGCATGCTTTGGTAAGAACGCTAGCCAGTG ATCCGATCCGTTAGTACCCCTGGAATTCTGGGGTCCCTTTCACACACGGC TTGTATTTCGAACCACAGATTGTTCGCGACGTTATCGACGGCAGCGCTGA TGTTGGCTTCGTGAGGACGGACATGGTCGAGCGGATGGACGCCGAAGGTA TAACCGCCATCGTCCATCCATCCGGTGTTTGACCTTGTTTCTTTATACCA CACTGCAAAGTATCTACCAGGGTGTTTGCTGCATTTGACGTCTACGACAA AGCAGAATTAGGCGAAACAGTAATGATCAGCGCCAAGCTTTCGGGCTCAA GCCCTCGTTTCGCCGCGTAGCCTCCGAATCCGAATACACATCATCCACAT TTATTCTGCCAACACACGCGCGCACGGTCCTAAACAGATAAAATAGCCCG ACTACAATATAGTGGATGAGTTTCTAAACGTTCGAGGAATAGCCTCTGTG GTTCACGTTAGACAGGAGGAAGTCCTGAAAAAGAGTTTTCGGAAACACCT CTTTTCAACGACCCCGCGTCCGATAAGCCTAGAAGTAACAAGAAAAAGTC GAGAAGTTGGCCTTGGAAATTATATAGTTATTTCAACATGCATGCATGAC AACCGTAGATACATACACACCGGCACACGGCTGAAACGTGCGGTTCATTG AAAGAGTTTTGACTGTGTTCGCGGCAAACTAGCTCGAAAAAACTCCTTCT GAACGATTCAGTTTTATACCCAGACAAAATTAAACTTGCACCCGCTTTTG CGCCCAAGTAGAGTCTGTGTTTCGCTCTCATTTAACCACGGACACCGGGC TCACCATAATAGGTGAAGCTAACTTGTCGGACGTCAGCTTCCTTTTTGTG CGAGAAGATATAGCTGCCAGCGGGTTCCCCTTCCCATCGGCCACAGGTAG GCGCATCACAATGCTGTCCCCCCATGAGGAACCGAATGTTAACGTAAGAG GTGAAGGTAAGTAGTACGGGAGTGTTTGCGTGTGGTTGTACTCCAAAAAT AACGGCAGGGCTTTCTCCTTCTTAGCTGCGGCGAATGTTGCCTCAAGGTT GCTCGAGCAACCGAAGGTTTCCCCACGAGACCTGATCATAACCCCTTCGC CCAAACAAAAATAAAGATATACGGAGTAACTTCTGCTTTTCCGACCTCAC CATCGCCCATCCCGCCTGTCCATCCTTCGACGCGGTGAAGATTTGGTGCC AGAATGGCCCCTACAGGTACTGCCCCACGTCCCCGCAGATCTCAGCAAAG AAGTCGTGCGCGCCTTGCTGCGACTCAACCAGACCCACGAGGCCGCTGTT GCCGGCGCGTACTCCACGTGGGACGCGCCCTTGTCCTACTCCTCCCTCAG GTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig69:41915..43418-

>mRNA_L-elsbetiae_contig69.15665.1 ID=mRNA_L-elsbetiae_contig69.15665.1|Name=mRNA_L-elsbetiae_contig69.15665.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig69:41915..43418- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGACCCTTCCGAACTTCGGCTAGCGTACAACCAAAAAAAGATGGC
GGACCCTTCCGAACTTCGGCTAGCGTACAACCAAAAAAAGATTGTTCGCG
ACGTTATCGACGGCAGCGCTGATGTTGGCTTCGTGAGGACGGACATGGTC
GAGCGGATGGACGCCGAAGATTGTTCGCGACGTTATCGACGGCAGCGCTG
ATGTTGGCTTCGTGAGGACGGACATGGTCGAGCGGATGGACGCCGAAGGT
GAAGCTAACTTGTCGGACGTCAGCTTCCTTTTTGTGCGAGAAGATATAGC
TGCCAGCGGGTTCCCCTTCCCATCGGCCACAGGTGAAGCTAACTTGTCGG
ACGTCAGCTTCCTTTTTGTGCGAGAAGATATAGCTGCCAGCGGGTTCCCC
TTCCCATCGGCCACAGATTTGGTGCCAGAATGGCCCCTACAGGTACTGCC
CCACGTCCCCGCAGATCTCAGCAAAGAAGTCGTGCGCGCCTTGCTGCGAC
TCAACCAGACCCACGAGGCCGCTGTTGCCGGCGCGTACTCCACGTGGGAC
GCGCCCTTGTCCTACTCCTCCCTCAGGTGAATTTGGTGCCAGAATGGCCC
CTACAGGTACTGCCCCACGTCCCCGCAGATCTCAGCAAAGAAGTCGTGCG
CGCCTTGCTGCGACTCAACCAGACCCACGAGGCCGCTGTTGCCGGCGCGT
ACTCCACGTGGGACGCGCCCTTGTCCTACTCCTCCCTCAGGTGA
back to top