mRNA_L-elsbetiae_contig6861.15619.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6861.15619.1
Unique NamemRNA_L-elsbetiae_contig6861.15619.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6861.15619.1 vs. uniprot
Match: A0A6H5KXM6_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM6_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 3.410e-73
Identity = 132/213 (61.97%), Postives = 158/213 (74.18%), Query Frame = 2
Query:   26 GEVTWGRLCVAIGRYFERKVPGARERPLESRDFDLFASDAALWRRKDGSLVSQAERKGFASVSEMSVSRERLETFWLWFWQAVTTLCSTSAWSTGGLRGRAPGFAGFMRKDEALARLSGKEPGTFLIRFSMSERGALAVHYTSTSRGRRRGELVGVIVQVSSAGELSI--RDGKRPYHDLDDLVLSLEQLRFLHPDVRKDDVFSRPERRGSWA 658
            GEV WGRLC AIGRYFER+V GAR R LE+ DFDLFASD ALWR+ DG   ++   +    V+ + +SR++LE FW WFWQAVTTL  T AWSTG L G A GFAGFM+K+ ALA LS +EPGTFL+RFS S+ GALAVHY      +RRG +V  IV VSSAG LS+  R G+R +HDLDDLVLS  QL+FLHP +RK +VF+RP RR SW+
Sbjct:  781 GEVRWGRLCEAIGRYFERRVLGARIRRLEASDFDLFASDQALWRQSDGPPPAEMALQHGGDVAGVPISRKKLEPFWRWFWQAVTTLRRTPAWSTG-LNGPALGFAGFMKKETALALLSSEEPGTFLVRFSTSKPGALAVHYVR----KRRGTVVSGIVNVSSAGALSVEKRAGERTFHDLDDLVLSTGQLKFLHPGLRKQEVFARPRRRESWS 988          
BLAST of mRNA_L-elsbetiae_contig6861.15619.1 vs. uniprot
Match: D8LEZ2_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEZ2_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 1.810e-70
Identity = 126/211 (59.72%), Postives = 148/211 (70.14%), Query Frame = 2
Query:   32 VTWGRLCVAIGRYFERKVPGARERPLESRDFDLFASDAALWRRKDGSLVSQAERKGFASVSEMSVSRERLETFWLWFWQAVTTLCSTSAWSTGGLRGRAPGFAGFMRKDEALARLSGKEPGTFLIRFSMSERGALAVHYTSTSRGRRRGELVGVIVQVSSAGELSI--RDGKRPYHDLDDLVLSLEQLRFLHPDVRKDDVFSRPERRGSWA 658
            V WGRLC AIGRYFER+V GAR RPLE+ DFDLFASD ALWR+ DG   ++   +    V+ + +SR++LE FW WFWQAVTTL  T AWSTG L G A GFAGFM+KD AL  LS  EPGTFL+RF          HY      +RRG +V  IV VSSAG LS+  R G+R +HDLDDLVLS EQL+FLHP VRK +VF+RP RR SW+
Sbjct:  498 VRWGRLCEAIGRYFERRVLGARIRPLEASDFDLFASDEALWRQSDGPPPAETALQHGGDVAGVPISRKKLEPFWRWFWQAVTTLRRTPAWSTG-LHGPALGFAGFMKKDTALTLLSSAEPGTFLVRFXXXXXXXXXXHYVR----KRRGTVVSGIVNVSSAGALSVEKRAGERTFHDLDDLVLSTEQLKFLHPGVRKQEVFARPRRRESWS 703          
BLAST of mRNA_L-elsbetiae_contig6861.15619.1 vs. uniprot
Match: A0A7M5WWD3_9CNID (Signal transducer and activator of transcription n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5WWD3_9CNID)

HSP 1 Score: 58.2 bits (139), Expect = 2.950e-6
Identity = 56/210 (26.67%), Postives = 93/210 (44.29%), Query Frame = 2
Query:   29 EVTWGRLCVAIGRYFERKVPGARERPLESRDFDLFASDAALWRRK------DGSLVSQAERKGFASVSEMSVSRERLETFWLWFWQAVTTLCST--SAWSTGGLRGRAPGFAGFMRKDEALARLSGKEPGTFLIRFSMSERGALAVHYTSTSRGRRRGELVGVIVQVSSAGELSIRDGKRPYHDLDDLVLSLEQLRFLHPDVRKDDVFSR 634
            EVTW  + VA+             R + + D +L +      R K      D  +++   +  +A  ++  + + R  TFW WF  A+  +       W    L         FM +  A  +L  K PGTFLIRFS  E GA+ + + +   GR+  E+    +Q  S+ + SIR+       L D +  + +L +L+P++RK+  F R
Sbjct:  535 EVTWKDMSVAL-----------NARWMMTSDNELHSDHLMYLREKIFSNVADKEMITPETKIPWALFNKEPL-KGRSFTFWEWFHGAIEVVRKNLKEHWKDSTLE--------FMSRQTAHQKLLEKTPGTFLIRFSDGELGAVTIAWCNERHGRK--EIW--YLQPWSSKDFSIRN-------LADRIFDIPELTYLYPNIRKEQAFGR 713          
BLAST of mRNA_L-elsbetiae_contig6861.15619.1 vs. uniprot
Match: A0A6A3NIE2_9STRA (SH2 domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NIE2_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.030e-6
Identity = 56/216 (25.93%), Postives = 88/216 (40.74%), Query Frame = 2
Query:   20 KEGEVTWGRLCVAIGRYFERKVPG-ARERPLESRDFDLFASDAALWRRKDGSLVSQAERKGFASVSEMSVSRERLETFWLWFWQAVTTLCSTSAWSTGGLRGRAPGFA-GFMRKDEALARLSGKEPGTFLIRFSMSERGALAVHYTSTSRGRRRGELVGVIVQVSSAGELSIRDGKR----------PYHDLDDLVLSLEQLRFLHPDVRKDDVFS 631
            K+  + W  +   +  +F  K+ G A  RPL +R  D  +  + +W    G  V+ A+R G       +VS      FW WF   V  +  ++ W     R   P    GF+ K   L+ L     GTFL+RFS +    + + Y    R  +  + V V  Q    G      G+            +  L +L+LS+  L+FL P   K+  F+
Sbjct:  779 KDIPLDW--IAPQVSCFFATKLKGDAARRPLSTRSIDFLSKSSLIW---GGEGVAPAQRGG-------AVSLRMFAAFWRWFRPLVDCILYSTLW-----RHTEPRLLHGFLSKGACLSMLERAPTGTFLLRFSETRLRCIVIVYV---RDDQCVQFVPVTWQPDRGGWFVALQGEANTDGAEGNGVTFPTLQELILSVNVLKFLFPQTPKEAAFT 974          
BLAST of mRNA_L-elsbetiae_contig6861.15619.1 vs. uniprot
Match: G4ZYP8_PHYSP (SH2 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZYP8_PHYSP)

HSP 1 Score: 57.8 bits (138), Expect = 4.090e-6
Identity = 52/215 (24.19%), Postives = 88/215 (40.93%), Query Frame = 2
Query:   20 KEGEVTWGRLCVAIGRYFERKVPG-ARERPLESRDFDLFASDAALWRRKDGSLVSQAERKGFASVSEMSVSRERLETFWLWFWQAVTTLCSTSAWSTGGLRGRAPGFAGFMRKDEALARLSGKEPGTFLIRFSMSERGALAVHYTSTSR---------GRRRGELVGVIVQVSSAGELSIRDGKR-PYHDLDDLVLSLEQLRFLHPDVRKDDVFS 631
            K+  + W  +   +  +F  K+ G A  RPL +R  D  +  + +W R+    ++ A+R G       +VS      FW WF   V  +  ++ W     R       GF+ K   ++ L    PGTFL+RFS +    + + Y    +            RG+     V +         +G    +  L +L+LS+  L+FL P   K+  F+
Sbjct:  780 KDIPLDW--IAPQVSCFFATKLKGDAARRPLSTRSIDFLSKSSLIWGREG---IAPAQRGG-------AVSLRMFAAFWGWFRPLVDCVLYSTLWPHTEPRL----LHGFLSKGACVSMLESAPPGTFLLRFSETRMRCIVIVYVRDDQCVQFVPVNWQPERGDW---FVALQGGANSGAAEGNGVTFPTLQELILSVNVLKFLFPQTPKEAAFT 975          
BLAST of mRNA_L-elsbetiae_contig6861.15619.1 vs. uniprot
Match: A0A1S3NW14_SALSA (Signal transducer and activator of transcription n=25 Tax=Salmonidae TaxID=8015 RepID=A0A1S3NW14_SALSA)

HSP 1 Score: 54.3 bits (129), Expect = 5.650e-5
Identity = 37/101 (36.63%), Postives = 51/101 (50.50%), Query Frame = 2
Query:  341 GFMRKDEALARLSGKEPGTFLIRFSMSERGALAVHYTSTSRGRRRGELVGVIVQVSSAGELS---IRDGKRPYHDLDDLVLSLEQLRFLHPDVRKDDVFSR 634
            GF+ K+   ARL  KEPGTFL+RFS S  G +   +   S     GE   + V+  +   LS     D  R Y  + D  +    L+FL+PD+ KD+ F R
Sbjct:  574 GFVSKETERARLKDKEPGTFLLRFSESHLGGITFTWVEQSDS---GEAKFISVEPYTKSRLSALPFADIIRDYKVITDGEVPENPLKFLYPDIPKDEAFGR 671          
BLAST of mRNA_L-elsbetiae_contig6861.15619.1 vs. uniprot
Match: C0HA55_SALSA (Signal transducer and activator of transcription n=30 Tax=Salmonidae TaxID=8015 RepID=C0HA55_SALSA)

HSP 1 Score: 54.3 bits (129), Expect = 5.650e-5
Identity = 37/101 (36.63%), Postives = 51/101 (50.50%), Query Frame = 2
Query:  341 GFMRKDEALARLSGKEPGTFLIRFSMSERGALAVHYTSTSRGRRRGELVGVIVQVSSAGELS---IRDGKRPYHDLDDLVLSLEQLRFLHPDVRKDDVFSR 634
            GF+ K+   ARL  KEPGTFL+RFS S  G +   +   S     GE   + V+  +   LS     D  R Y  + D  +    L+FL+PD+ KD+ F R
Sbjct:  575 GFVSKETERARLKDKEPGTFLLRFSESHLGGITFTWVEQSDS---GEAKFISVEPYTKSRLSALPFADIIRDYKVITDGEVPENPLKFLYPDIPKDEAFGR 672          
BLAST of mRNA_L-elsbetiae_contig6861.15619.1 vs. uniprot
Match: A0A8C6UHH2_9GOBI (Signal transducer and activator of transcription n=5 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6UHH2_9GOBI)

HSP 1 Score: 54.3 bits (129), Expect = 5.700e-5
Identity = 42/118 (35.59%), Postives = 59/118 (50.00%), Query Frame = 2
Query:  341 GFMRKDEALARLSGKEPGTFLIRFSMSERGALAVHYTSTSRGRRRGELVGVIVQVSSAGELS---IRDGKRPYHDLDDLVLSLEQLRFLHPDVRKDDVFSR-----PERRGSWATGEG 670
            GF+ K+     L  KEPGTFL+RFS S  G +   +T   RG   GE+    V+  +   LS     D  R Y  + D V+    L+FL+PD+ KD+ F R     P +  +  TG+G
Sbjct:  557 GFVSKETERTLLKDKEPGTFLLRFSESHLGGIT--FTWVDRGDN-GEVKFNSVEPYTKNRLSALPFADIIRDYKVISDGVVPENPLKFLYPDIPKDEAFGRLYNSQPSKGETGETGQG 671          
BLAST of mRNA_L-elsbetiae_contig6861.15619.1 vs. uniprot
Match: A0A8C7H2F6_ONCKI (Signal transducer and activator of transcription n=2 Tax=Oncorhynchus TaxID=8016 RepID=A0A8C7H2F6_ONCKI)

HSP 1 Score: 53.9 bits (128), Expect = 7.610e-5
Identity = 37/101 (36.63%), Postives = 51/101 (50.50%), Query Frame = 2
Query:  341 GFMRKDEALARLSGKEPGTFLIRFSMSERGALAVHYTSTSRGRRRGELVGVIVQVSSAGELS---IRDGKRPYHDLDDLVLSLEQLRFLHPDVRKDDVFSR 634
            GF+ K+   ARL  KEPGTFL+RFS S  G +   +   S     GE   + V+  +   LS     D  R Y  + D  +    L+FL+PD+ KD+ F R
Sbjct:  554 GFVSKETERARLKDKEPGTFLLRFSESHLGGITFTWVEQSDS---GEAKFISVEPYTKSRLSALPFADIIRDYKVIADGEVPENPLKFLYPDIPKDEAFGR 651          
BLAST of mRNA_L-elsbetiae_contig6861.15619.1 vs. uniprot
Match: A0A8C7MFM6_ONCKI (Signal transducer and activator of transcription n=4 Tax=Oncorhynchus TaxID=8016 RepID=A0A8C7MFM6_ONCKI)

HSP 1 Score: 53.9 bits (128), Expect = 7.610e-5
Identity = 37/101 (36.63%), Postives = 51/101 (50.50%), Query Frame = 2
Query:  341 GFMRKDEALARLSGKEPGTFLIRFSMSERGALAVHYTSTSRGRRRGELVGVIVQVSSAGELS---IRDGKRPYHDLDDLVLSLEQLRFLHPDVRKDDVFSR 634
            GF+ K+   ARL  KEPGTFL+RFS S  G +   +   S     GE   + V+  +   LS     D  R Y  + D  +    L+FL+PD+ KD+ F R
Sbjct:  568 GFVSKETERARLKDKEPGTFLLRFSESHLGGITFTWVEQSDS---GEAKFISVEPYTKSRLSALPFADIIRDYKVIADGEVPENPLKFLYPDIPKDEAFGR 665          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6861.15619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KXM6_9PHAE3.410e-7361.97SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LEZ2_ECTSI1.810e-7059.72SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A7M5WWD3_9CNID2.950e-626.67Signal transducer and activator of transcription n... [more]
A0A6A3NIE2_9STRA3.030e-625.93SH2 domain-containing protein n=4 Tax=Phytophthora... [more]
G4ZYP8_PHYSP4.090e-624.19SH2 domain-containing protein n=1 Tax=Phytophthora... [more]
A0A1S3NW14_SALSA5.650e-536.63Signal transducer and activator of transcription n... [more]
C0HA55_SALSA5.650e-536.63Signal transducer and activator of transcription n... [more]
A0A8C6UHH2_9GOBI5.700e-535.59Signal transducer and activator of transcription n... [more]
A0A8C7H2F6_ONCKI7.610e-536.63Signal transducer and activator of transcription n... [more]
A0A8C7MFM6_ONCKI7.610e-536.63Signal transducer and activator of transcription n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6861contigL-elsbetiae_contig6861:6210..6884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size676
Cds size675
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.2986407-CDS-L-elsbetiae_contig6861:6209..68841622816759.2986407-CDS-L-elsbetiae_contig6861:6209..6884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6861 6210..6884 +
1691683791.977457-CDS-L-elsbetiae_contig6861:6209..68841691683791.977457-CDS-L-elsbetiae_contig6861:6209..6884Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6861 6210..6884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6861.15619.1prot_L-elsbetiae_contig6861.15619.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6861 6210..6884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6861.15619.1

>prot_L-elsbetiae_contig6861.15619.1 ID=prot_L-elsbetiae_contig6861.15619.1|Name=mRNA_L-elsbetiae_contig6861.15619.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=225bp
GCQGGGKGRRGDMGPAVRGDRAVLREEGPGGPRTAAREQRLRPVRVGRGA
LEEKGRVAGLAGGEEGLRERFGDVRLSREAGDLLALVLAGGDHPVQHLGL
VDGRAPRPRAGVRGLHEEGRGARAALGQRARDVPDPVLHERKRGSGGALH
VDVAGAAARRAGGRYRPGEQRGRAEHQGREAAVPRPRRPRAVPRAAQVPA
PRRPKGRRLFPAGAERELGDRGGLG
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mRNA from alignment at L-elsbetiae_contig6861:6210..6884+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6861.15619.1 ID=mRNA_L-elsbetiae_contig6861.15619.1|Name=mRNA_L-elsbetiae_contig6861.15619.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=675bp|location=Sequence derived from alignment at L-elsbetiae_contig6861:6210..6884+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTGCCAAGGAGGGGGGAAAGGAAGGCGAGGTGACATGGGGCCGGCTGT GCGTGGCGATCGGGCGGTACTTCGAGAGGAAGGTCCCGGGGGCCCGAGAA CGGCCGCTCGAGAGCAGAGACTTCGACCTGTTCGCGTCGGACGCGGCGCT CTGGAGGAGAAAGGACGGGTCGCTGGTCTCGCAGGCGGAGAGGAAGGGCT TCGCGAGCGTTTCGGAGATGTCCGTCTCTCGCGAGAGGCTGGAGACCTTC TGGCTCTGGTTTTGGCAGGCGGTGACCACCCTGTGCAGCACCTCGGCCTG GTCGACGGGAGGGCTCCGCGGCCGCGCGCCGGGGTTCGCGGGCTTCATGA GGAAGGACGAGGCGCTCGCGCGGCTCTCGGGCAAAGAGCCCGGGACGTTC CTGATCCGGTTCTCCATGAGCGAAAGAGGGGCTCTGGCGGTGCACTACAC GTCGACGTCGCGGGGGCGGCGGCGCGGCGAGCTGGTGGGCGTTATCGTCC AGGTGAGCAGCGCGGGCGAGCTGAGCATCAGGGACGGGAAGCGGCCGTAC CACGACCTCGACGACCTCGTGCTGTCCCTCGAGCAGCTCAGGTTCCTGCA CCCCGACGTCCGAAAGGACGACGTCTTTTCCCGGCCGGAGCGGAGAGGGA GCTGGGCGACCGGGGAGGGTTGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6861:6210..6884+

>mRNA_L-elsbetiae_contig6861.15619.1 ID=mRNA_L-elsbetiae_contig6861.15619.1|Name=mRNA_L-elsbetiae_contig6861.15619.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1350bp|location=Sequence derived from alignment at L-elsbetiae_contig6861:6210..6884+ (Laminarionema elsbetiae ELsaHSoW15)
GGGTGCCAAGGAGGGGGGAAAGGAAGGCGAGGTGACATGGGGCCGGCTGT
GCGTGGCGATCGGGCGGTACTTCGAGAGGAAGGTCCCGGGGGCCCGAGAA
CGGCCGCTCGAGAGCAGAGACTTCGACCTGTTCGCGTCGGACGCGGCGCT
CTGGAGGAGAAAGGACGGGTCGCTGGTCTCGCAGGCGGAGAGGAAGGGCT
TCGCGAGCGTTTCGGAGATGTCCGTCTCTCGCGAGAGGCTGGAGACCTTC
TGGCTCTGGTTTTGGCAGGCGGTGACCACCCTGTGCAGCACCTCGGCCTG
GTCGACGGGAGGGCTCCGCGGCCGCGCGCCGGGGTTCGCGGGCTTCATGA
GGAAGGACGAGGCGCTCGCGCGGCTCTCGGGCAAAGAGCCCGGGACGTTC
CTGATCCGGTTCTCCATGAGCGAAAGAGGGGCTCTGGCGGTGCACTACAC
GTCGACGTCGCGGGGGCGGCGGCGCGGCGAGCTGGTGGGCGTTATCGTCC
AGGTGAGCAGCGCGGGCGAGCTGAGCATCAGGGACGGGAAGCGGCCGTAC
CACGACCTCGACGACCTCGTGCTGTCCCTCGAGCAGCTCAGGTTCCTGCA
CCCCGACGTCCGAAAGGACGACGTCTTTTCCCGGCCGGAGCGGAGAGGGA
GCTGGGCGACCGGGGAGGGTTGGGCGGGTGCCAAGGAGGGGGGAAAGGAA
GGCGAGGTGACATGGGGCCGGCTGTGCGTGGCGATCGGGCGGTACTTCGA
GAGGAAGGTCCCGGGGGCCCGAGAACGGCCGCTCGAGAGCAGAGACTTCG
ACCTGTTCGCGTCGGACGCGGCGCTCTGGAGGAGAAAGGACGGGTCGCTG
GTCTCGCAGGCGGAGAGGAAGGGCTTCGCGAGCGTTTCGGAGATGTCCGT
CTCTCGCGAGAGGCTGGAGACCTTCTGGCTCTGGTTTTGGCAGGCGGTGA
CCACCCTGTGCAGCACCTCGGCCTGGTCGACGGGAGGGCTCCGCGGCCGC
GCGCCGGGGTTCGCGGGCTTCATGAGGAAGGACGAGGCGCTCGCGCGGCT
CTCGGGCAAAGAGCCCGGGACGTTCCTGATCCGGTTCTCCATGAGCGAAA
GAGGGGCTCTGGCGGTGCACTACACGTCGACGTCGCGGGGGCGGCGGCGC
GGCGAGCTGGTGGGCGTTATCGTCCAGGTGAGCAGCGCGGGCGAGCTGAG
CATCAGGGACGGGAAGCGGCCGTACCACGACCTCGACGACCTCGTGCTGT
CCCTCGAGCAGCTCAGGTTCCTGCACCCCGACGTCCGAAAGGACGACGTC
TTTTCCCGGCCGGAGCGGAGAGGGAGCTGGGCGACCGGGGAGGGTTGGGC
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