mRNA_L-elsbetiae_contig6809.15572.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6809.15572.1
Unique NamemRNA_L-elsbetiae_contig6809.15572.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6809.15572.1 vs. uniprot
Match: D8LJ48_ECTSI (Similar to doublecortin and CaM kinase-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ48_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 4.650e-16
Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:    1 GIYFDSCSLGLMPALVDQTE--PGLAKERTEKLVKTLGNGPDMATAMRDIYLARHCNLDLSTSDSNGDLTRHGILGAGHY 234
            G Y    S G MP LV++ E  P L + RT +LV+   N P M+TA+RDIY+AR C+LDLS +DSN DL+R  ++GAG+Y
Sbjct:  378 GDYSMPSSHGSMPELVNENEVEPHLTQTRTNRLVEIFRNAPLMSTAVRDIYIARRCDLDLSATDSNDDLSRERVIGAGYY 457
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BLAST of mRNA_L-elsbetiae_contig6809.15572.1 vs. uniprot
Match: A0A6H5JND7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND7_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.210e-15
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    1 GIYFDSCSLGLMPAL--VDQTEPGLAKERTEKLVKTLGNGPDMATAMRDIYLARHCNLDLSTSDSNGDLTRHGILGAGHY 234
            G +    S G +P L  V++ EP  A  R ++L +   N P M TA+RDIY+A HC+LDLS SDSNGDLTR  ++G G+Y
Sbjct:  399 GDHIPPSSHGSIPELENVNEPEPHFAPTRMDRLFEIFSNAPRMFTAVRDIYVASHCDLDLSASDSNGDLTRERVIGTGYY 478
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BLAST of mRNA_L-elsbetiae_contig6809.15572.1 vs. uniprot
Match: D7G381_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G381_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.110e-15
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:   46 VDQTEPGLAKERTEKLVKTLGNGPDMATAMRDIYLARHCNLDLSTSDSNGDLTRHGILGAGHY 234
            V++ EP LA  R ++L++   N P M+TA+RDIY+A HC+LDLS +DSNGDLTR  ++G G+Y
Sbjct:  398 VNEPEPHLAPTRMDRLIEIFSNVPLMSTAVRDIYIASHCDLDLSATDSNGDLTRERVIGTGYY 460
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BLAST of mRNA_L-elsbetiae_contig6809.15572.1 vs. uniprot
Match: A0A6H5KAA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA7_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.540e-14
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:   34 MPALVDQTE--PGLAKERTEKLVKTLGNGPDMATAMRDIYLARHCNLDLSTSDSNGDLTRHGILGAGHY 234
            MP LV++ E  P L + RT +L +   N P M+TA+ DI  ARHC+LDLS +DSNGDLTR  ++GAG+Y
Sbjct:    1 MPELVNEKELEPHLTRTRTNRLFEVFRNAPLMSTAVSDI--ARHCDLDLSATDSNGDLTRERVIGAGYY 67
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6809.15572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJ48_ECTSI4.650e-1651.25Similar to doublecortin and CaM kinase-like 3 n=1 ... [more]
A0A6H5JND7_9PHAE2.210e-1548.75Protein kinase domain-containing protein n=1 Tax=E... [more]
D7G381_ECTSI4.110e-1553.97N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5KAA7_9PHAE1.540e-1453.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6809contigL-elsbetiae_contig6809:5078..5313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size236
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816754.4924238-CDS-L-elsbetiae_contig6809:5077..53111622816754.4924238-CDS-L-elsbetiae_contig6809:5077..5311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6809 5078..5311 +
1691683788.4341393-CDS-L-elsbetiae_contig6809:5077..53111691683788.4341393-CDS-L-elsbetiae_contig6809:5077..5311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6809 5078..5311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6809.15572.1prot_L-elsbetiae_contig6809.15572.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6809 5078..5311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6809.15572.1

>prot_L-elsbetiae_contig6809.15572.1 ID=prot_L-elsbetiae_contig6809.15572.1|Name=mRNA_L-elsbetiae_contig6809.15572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
GIYFDSCSLGLMPALVDQTEPGLAKERTEKLVKTLGNGPDMATAMRDIYL
ARHCNLDLSTSDSNGDLTRHGILGAGHY
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mRNA from alignment at L-elsbetiae_contig6809:5078..5313+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6809.15572.1 ID=mRNA_L-elsbetiae_contig6809.15572.1|Name=mRNA_L-elsbetiae_contig6809.15572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=236bp|location=Sequence derived from alignment at L-elsbetiae_contig6809:5078..5313+ (Laminarionema elsbetiae ELsaHSoW15)
GGTATCTACTTTGACTCTTGCTCCCTGGGCTTGATGCCCGCGTTGGTGGA
CCAGACCGAGCCCGGCCTGGCAAAGGAAAGGACGGAGAAGCTCGTCAAGA
CCCTCGGCAACGGGCCTGACATGGCCACAGCCATGCGGGACATCTACCTG
GCACGCCACTGCAATCTAGACCTGTCGACGTCCGACTCGAACGGCGACCT
GACGAGGCATGGGATCCTCGGCGCCGGCCACTACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6809:5078..5313+

>mRNA_L-elsbetiae_contig6809.15572.1 ID=mRNA_L-elsbetiae_contig6809.15572.1|Name=mRNA_L-elsbetiae_contig6809.15572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig6809:5078..5313+ (Laminarionema elsbetiae ELsaHSoW15)
GGTATCTACTTTGACTCTTGCTCCCTGGGCTTGATGCCCGCGTTGGTGGA
CCAGACCGAGCCCGGCCTGGCAAAGGAAAGGACGGAGAAGCTCGTCAAGA
CCCTCGGCAACGGGCCTGACATGGCCACAGCCATGCGGGACATCTACCTG
GCACGCCACTGCAATCTAGACCTGTCGACGTCCGACTCGAACGGCGACCT
GACGAGGCATGGGATCCTCGGCGCCGGCCACTACGGTATCTACTTTGACT
CTTGCTCCCTGGGCTTGATGCCCGCGTTGGTGGACCAGACCGAGCCCGGC
CTGGCAAAGGAAAGGACGGAGAAGCTCGTCAAGACCCTCGGCAACGGGCC
TGACATGGCCACAGCCATGCGGGACATCTACCTGGCACGCCACTGCAATC
TAGACCTGTCGACGTCCGACTCGAACGGCGACCTGACGAGGCATGGGATC
CTCGGCGCCGGCCACTAC
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