mRNA_L-elsbetiae_contig6786.15539.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6786.15539.1
Unique NamemRNA_L-elsbetiae_contig6786.15539.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6786.15539.1 vs. uniprot
Match: A0A6H5L556_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L556_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 8.960e-6
Identity = 35/54 (64.81%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  262 MLKAHKRKTRRISGGGGVGRSVSPRPSLL----RGQQEPGRRASST-PSSPIVA 408
            MLKAHKRKTRRIS GGG  RSVSPRPS      R    PGRR S T P+SP+ A
Sbjct:    1 MLKAHKRKTRRISSGGGSARSVSPRPSFGAEPGRRSAAPGRRKSKTAPTSPLDA 54
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6786.15539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L556_9PHAE8.960e-664.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6786contigL-elsbetiae_contig6786:6792..7214 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptioncGMP-dependent protein kinase
Ec32 orthologEc-24_001360.4
Exons1
Model size425
Cds size162
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.4517834-UTR-L-elsbetiae_contig6786:6791..70521622816751.4517834-UTR-L-elsbetiae_contig6786:6791..7052Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6786 6792..7052 +
1691683786.150555-UTR-L-elsbetiae_contig6786:6791..70521691683786.150555-UTR-L-elsbetiae_contig6786:6791..7052Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6786 6792..7052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.4660883-CDS-L-elsbetiae_contig6786:7052..72141622816751.4660883-CDS-L-elsbetiae_contig6786:7052..7214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6786 7053..7214 +
1691683786.1617012-CDS-L-elsbetiae_contig6786:7052..72141691683786.1617012-CDS-L-elsbetiae_contig6786:7052..7214Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6786 7053..7214 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6786.15539.1prot_L-elsbetiae_contig6786.15539.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6786 7053..7214 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6786.15539.1

>prot_L-elsbetiae_contig6786.15539.1 ID=prot_L-elsbetiae_contig6786.15539.1|Name=mRNA_L-elsbetiae_contig6786.15539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
MLKAHKRKTRRISGGGGVGRSVSPRPSLLRGQQEPGRRASSTPSSPIVAR
GDDP
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mRNA from alignment at L-elsbetiae_contig6786:6792..7214+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6786.15539.1 ID=mRNA_L-elsbetiae_contig6786.15539.1|Name=mRNA_L-elsbetiae_contig6786.15539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=423bp|location=Sequence derived from alignment at L-elsbetiae_contig6786:6792..7214+ (Laminarionema elsbetiae ELsaHSoW15)
CACGATCACATCTTCCTTCTTTTTCGCACTCTAGACATCTTTAACCTTCG
TGACAAACTCACGGGCGTTCGCTACGGTCCAAGGCAGTGGCGGCAACGGT
GAACGGTCGCAAACGGCACCGTTACTTTTTCCGCAGAGAGGCGCGCGGGG
ATAATTTTTTGGGTCCTCTCACTCTCTTTTTCTGCAACGTCCCTATAGGG
CGTGTGTGTACTGGCCGCGGGTAAGGACGCTGCACCTTGCCGGCACGCCG
CGGATTTCTCGATGCTCAAAGCTCACAAGAGAAAAACCCGTAGAATCAGT
GGAGGAGGAGGAGTTGGGCGGAGCGTTTCACCGAGGCCTTCCTTGTTGCG
CGGGCAGCAAGAGCCCGGCCGTCGGGCGTCGAGTACTCCCTCCTCTCCCA
TCGTCGCGCGAGGCGACGACCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6786:6792..7214+

>mRNA_L-elsbetiae_contig6786.15539.1 ID=mRNA_L-elsbetiae_contig6786.15539.1|Name=mRNA_L-elsbetiae_contig6786.15539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig6786:6792..7214+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCAAAGCTCACAAGAGAAAAACCCGTAGAATCAGTGGAGGAGGAGG
AGTTGGGCGGAGCGTTTCACCGAGGCCTTCCTTGTTGCGCGGGCAGCAAG
AGCCCGGCCGTCGGGCGTCGAGTACTCCCTCCTCTCCCATCGTCGCGCGA
GGCGACGACCCCATGCTCAAAGCTCACAAGAGAAAAACCCGTAGAATCAG
TGGAGGAGGAGGAGTTGGGCGGAGCGTTTCACCGAGGCCTTCCTTGTTGC
GCGGGCAGCAAGAGCCCGGCCGTCGGGCGTCGAGTACTCCCTCCTCTCCC
ATCGTCGCGCGAGGCGACGACCCC
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