mRNA_L-elsbetiae_contig6742.15491.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6742.15491.1
Unique NamemRNA_L-elsbetiae_contig6742.15491.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6742.15491.1 vs. uniprot
Match: A0A6H5JZQ3_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ3_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 1.540e-61
Identity = 114/208 (54.81%), Postives = 148/208 (71.15%), Query Frame = 3
Query:  261 GSLLAEPHIRFLLFTFAIYSFAIAGVEDVYALWALSTVPKGGLDWSTKEIGQVLLMCGMMVFTFELLVLPVLLKRVGICTCRRVGAAILVPAFLLLPQLSSLQGTGYPIIVASVAVLFTIYVACDSFYTGISLAINNACSPDRRGQLNGIASSVASVAGAVGPAVWLALFAFSIE--GGRHAFPF--DFHLTFYVMAALRLAVAFCMW 872
            GSLLA  H+R LL  + IY+F I+G ED++ALWALST P GGLDWS ++IGQVLL  G+MVF FEL  +P++ KR+G+   +R+ +  LV    L+P L  L  TG+ +++ASV +LFT+Y  CD+FYT IS AINNA  P+R G++NG+A+ VASV  AVGPA W AL+AFS+E   GR  FPF  DF L F++MA LRL VA   W
Sbjct:  238 GSLLAAGHVRVLLVVYGIYTFIISGFEDLFALWALSTTPVGGLDWSAEQIGQVLLASGLMVFVFELFAVPLVTKRLGVTISQRLSSITLVFVLPLVPVLGRLPNTGHLLMIASVGLLFTVYSTCDAFYTCISFAINNAAEPERCGEVNGLAACVASVVSAVGPAAWSALYAFSVEFADGRSPFPFPIDFRLAFWLMAFLRLVVAILSW 445          
BLAST of mRNA_L-elsbetiae_contig6742.15491.1 vs. uniprot
Match: D8LFV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV4_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 6.090e-57
Identity = 106/206 (51.46%), Postives = 138/206 (66.99%), Query Frame = 3
Query:  255 KGGSLLAEPHIRFLLFTFAIYSFAIAGVEDVYALWALSTVPKGGLDWSTKEIGQVLLMCGMMVFTFELLVLPVLLKRVGICTCRRVGAAILVPAFLLLPQLSSLQGTGYPIIVASVAVLFTIYVACDSFYTGISLAINNACSPDRRGQLNGIASSVASVAGAVGPAVWLALFAFSIE----GGRHAFPFDFHLTFYVMAALRLAVA 860
            K GSLLA  H+R LL  + I  F I+G ED++ALWALST P GGL WS ++IGQVLL  G+MVF FEL  +P++ KR+G+ T +R+ +  LV    L+P L  L   G+ +++ASV +LF IY  CD+F T IS  INNA  P+R G+LNG+A+ VASV   VGP+ W  L+AFS+E    G    FP DF L F++MA LRL VA
Sbjct:   38 KRGSLLAAGHVRVLLVIYGICMFIISGFEDLFALWALSTTPAGGLGWSAEQIGQVLLASGLMVFVFELFAVPLVTKRLGVTTSQRLSSVTLVFVLPLVPVLGHLLNAGHLLMIASVGLLFKIYAPCDAFLTCISFTINNAAEPERCGELNGLAACVASVVSKVGPSAWSTLYAFSVEVTDGGSPFPFPIDFRLAFWLMAFLRLVVA 243          
BLAST of mRNA_L-elsbetiae_contig6742.15491.1 vs. uniprot
Match: D8LRH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH7_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 2.190e-44
Identity = 89/209 (42.58%), Postives = 134/209 (64.11%), Query Frame = 3
Query:  267 LLAEPHIRFLLFTFAIYSFAIAGVEDVYALWALSTVPKGGLDWSTKEIGQVLLMCGMMVFTFELLVLPVLLKRVGICTCRRVGAAILVPAFLLLPQLSSLQGTGYPIIVASVAVLFTIYVACDSFYTGISLAINNACSPDRRGQLNGIASSVASVAGAVGPAVWLALFAFSIEG-GRHAFPFDFHLTFYVMAALRLAVAFCMWDASLQE 890
            LL E  +R +LF + IYSF++ G  ++Y LWALSTV  GGLDW+TK+IGQVL + G+ +  F+L+V P L KR+G+   +R    + +P +   P LS L+G+G P++V S+ + F   V   + +  I+LA NNA  P RR  LNG++ ++ S+A A GPA + A+FA+SI+  GR  FP D+HL FY++A    AV +  W+  + +
Sbjct:  461 LLEEKRVRAILFVYGIYSFSLIGFGEIYPLWALSTVASGGLDWTTKQIGQVLSLVGVGMLAFQLVVYPWLSKRIGVTRSQRWACFLAIPVYAFFPFLSRLRGSGVPLVVGSIVLNFFSNVTATAVFINIALATNNAVEPSRRATLNGLSMTLGSLAKAAGPAFFSAIFAWSIDDDGRRPFPLDYHLVFYLLALSMTAVCWASWNVIIDD 669          
BLAST of mRNA_L-elsbetiae_contig6742.15491.1 vs. uniprot
Match: D8LRH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH9_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 1.570e-43
Identity = 96/257 (37.35%), Postives = 144/257 (56.03%), Query Frame = 3
Query:  210 ALSVAVEKEGFGGSTKGGS------------------LLAEPHIRFLLFTFAIYSFAIAGVEDVYALWALSTVPKGGLDWSTKEIGQVLLMCGMMVFTFELLVLPVLLKRVGICTCRRVGAAILVPAFLLLPQLSSLQGTGYPIIVASVAVLFTIYVACDSFYTGISLAINNACSPDRRGQLNGIASSVASVAGAVGPAVWLALFAFSIEGGRHAFPFDFHLTFYVMAALRLAVAFCMWDASLQEEGVADHN*SGVM 926
            AL    + +GFG S  GG                   LL E   R ++F +A++SF   G  ++Y LWALSTV  GGLDWS+K+IGQ L +CG+ +  F+LLV P L KR+G    +R    + +P FL+ P LS L+GT   ++ AS+ +LF      ++ +  ++LA NNA  P RRG L G++ +  S+A A GP  + ++FA+SI+G R  FP D+HL FY++A   + V++  W      E V   + + V+
Sbjct:  381 ALQRLEKAKGFGDSDSGGEGRWGRRSTCWRECLVPIQLLTERRTRNVMFVYALFSFVAIGNRELYPLWALSTVASGGLDWSSKQIGQALSVCGIFMLFFQLLVYPRLSKRIGATRSQRWACFLSIPVFLVFPTLSHLRGTERTLVAASLVLLFLTNAVANTVFINVALATNNAVEPSRRGTLTGLSMTTGSLAKAAGPTFFSSIFAWSIDGRRRPFPLDYHLAFYLLALGMVLVSWASWGTICSPEPVQSQSAACVV 637          
BLAST of mRNA_L-elsbetiae_contig6742.15491.1 vs. uniprot
Match: D7G0M0_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M0_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.130e-18
Identity = 70/223 (31.39%), Postives = 111/223 (49.78%), Query Frame = 3
Query:  213 LSVAVEKEGFGGSTKGGSLLAEPHIRFLLFTFAIYSFAIAGVEDVYALWALSTVPKGGLDWSTKEIGQVLLMCGMMVFTFELLVLPVLLKRVGICTCRRVGAAILVPAFLLLPQLSSLQGTGYPIIVASVAVLFTIYVACDSFYTGISLAINNACSPDRRGQLNGIASSVASVAGAVGPAVWLALFAFSIEGGR-HAFP--FDFHLTFYVMAALRLAVAFCMW 872
            LS A + +   G    G LLA PH++ +LF   I +    G ++VY L+ALST   GGL W+T +IGQV+++ G+++   +L++ P  +K VGI   +R+G  + V AFL +P L+S+      +   SV     I  +  S    +SL          RG+L G+ ++  S+    GP  +   +A+S+      AF    D+HL F   A   + V    W
Sbjct:  315 LSAAEQGDEEQGLFGPGGLLARPHVKLVLFLGCIIATLAIGFDEVYPLYALSTPSVGGLGWNTVQIGQVMVVAGLLLAVCQLVLFPPFIKMVGITYFQRLGCGVGVAAFLAVPGLTSIGWDYDSLFSLSVVANNLIMCSLGSISLALSLGSTTLVPSRMRGKLGGLYNTAESLGRFCGPVGYATTYAWSVSPSTLEAFGGWVDYHLVFCASALALVVVGVMAW 537          
BLAST of mRNA_L-elsbetiae_contig6742.15491.1 vs. uniprot
Match: A0A6H5JH24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH24_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.280e-18
Identity = 66/207 (31.88%), Postives = 104/207 (50.24%), Query Frame = 3
Query:  261 GSLLAEPHIRFLLFTFAIYSFAIAGVEDVYALWALSTVPKGGLDWSTKEIGQVLLMCGMMVFTFELLVLPVLLKRVGICTCRRVGAAILVPAFLLLPQLSSLQGTGYPIIVASVAVLFTIYVACDSFYTGISLAINNACSPDRRGQLNGIASSVASVAGAVGPAVWLALFAFSIEGGR-HAFP--FDFHLTFYVMAALRLAVAFCMW 872
            G LLA  H++ +LF   I +    G ++VY L+ALST   GGL W+T +IGQVL+M G+M+   + ++ P  +K VGI + +R+G  + V  FL +P L+S+      +   SV     I  +  S    +SL          RG+L G+ ++  S+    GP  +   +A+S+      AF    D+H  FY+ A   + V    W
Sbjct:  161 GGLLARRHVKLVLFLGCISATLAIGFDEVYPLYALSTPSVGGLGWNTVQIGQVLVMAGLMLAVCQFVLFPSFIKMVGITSFQRLGCGVGVATFLAVPGLTSIGWDYDSLFSLSVVANNLILCSLGSITLALSLGSTTLVPSRMRGKLGGLYNTAESLGRFCGPVGYATTYAWSVSPSTLEAFGGWVDYHFVFYLSALALVVVGVMAW 367          
BLAST of mRNA_L-elsbetiae_contig6742.15491.1 vs. uniprot
Match: A0A6H5JAX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAX4_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.550e-18
Identity = 84/227 (37.00%), Postives = 116/227 (51.10%), Query Frame = 3
Query:  195 GNEPCALSVAVEKEGFGGSTKGGSLLAEPHIRFLLFTFAIYSFAIAGVEDVYALWALSTVPKGGLDWSTKEIGQVLLMCGMMVFTFELLVLPVLLKRVGICTCRRVGAAILVPAFLLLPQLSSLQGTGYPIIVASVAVLFTIYVACDSFYTGISLAI--NNACSPDRRGQLNGI---ASSVASVAGAVGPAVWLALFAFSIEGGRHAFPFDFHLTFYVMAALRLAVA 860
            G + C   V   +E  G    GG LL+ P ++ LLF   +    +AG E+V+ LWALSTV  GGLDW T EIG+VL + G ++   ++ + P ++K +G  T  R G  + +  FL  P           + VASVA + TI V C     GI+LA+   +  S   RG+L+G+   A S    A AVG AV   LFA+SI      +  D    FY  +AL L VA
Sbjct:  289 GLDACEPPVTSNREQQGHCGPGG-LLSVPRVKPLLFLVCVVQSLLAGFEEVFPLWALSTVGVGGLDWGTMEIGKVLFVSGCIMVVAQVFIFPSVIKILGAVTWMRTGCLLGICTFLATPNAKLFSWNYTTLFVASVASV-TI-VNCSLAAVGIALAVASTDIVSSRLRGKLSGLYGTAESFGRFASAVGSAV---LFAWSISSDNLGWV-DHRFVFY-SSALALGVA 507          
BLAST of mRNA_L-elsbetiae_contig6742.15491.1 vs. uniprot
Match: A0A6H5KX19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX19_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 4.570e-18
Identity = 57/145 (39.31%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  408 IGQVLLMCGMMVFTFELLVLPVLLKRVGICTCRRVGAAILVPAFLLLPQLSSLQGTGYPIIVASVAVLFTIYVACDSFYTGISLAINNACSPDRRGQLNGIASSVASVAGAVGPAVWLALFAFSIEG-GRHAFPFDFHLTFYVMA 839
            I  VL + G+ + TF+L+V P L KR+G+   +R    + +  + + P LS L+G+G  ++V S+ + F   V   + +T ++LA NNA  P R   LNG++  + S+A AVGPA + A+FA+SI+  GR  FP D+HL FY++A
Sbjct:  550 IYSVLSLVGVGMLTFQLVVYPWLSKRIGVTGSQRWACFLAILVYAVFPFLSRLRGSGVLLVVGSIVLNFFSNVTATAVFTNVALATNNAVEPSRWATLNGLSMMLGSLAKAVGPAFFSAIFAWSIDDDGRRPFPLDYHLVFYLLA 694          
BLAST of mRNA_L-elsbetiae_contig6742.15491.1 vs. uniprot
Match: D8LJX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX7_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.630e-17
Identity = 69/207 (33.33%), Postives = 107/207 (51.69%), Query Frame = 3
Query:  267 LLAEPHIRFLLFTFAIYSFAIAGVEDVYALWALSTVPKGGLDWSTKEIGQVLLMCGMMVFTFELLVLPVLLKRVGICTCRRVGAAILVPAFLLLPQLSSLQGTGYPIIVASVAVLFTIYVACDSFYTGISLAINNACS-PDR-RGQLNGIASSVASVAGAVGPAVWLALFAFSIEGGRHAFPFD---FHLTFYVMAALRLAVAFCMW 872
            LL  PH++ LL    +      G E+ Y L+ALST   GGL W+T +IG+VL+M G+ +  F+LL+LP L+K VGI   +RVG  +   AF+ +P +  L      +  ASVA     + +C      +++++ +    P R RG+L G+ +   S+   +GPA +   +A+S+     A  FD   F   F+V A L    A   W
Sbjct:  169 LLVTPHVKTLLTLGCVVQALQIGFEEAYPLFALSTPDVGGLGWNTFQIGKVLVMTGLFMACFQLLLLPPLIKVVGITNWQRVGFVVGALAFIAIPSVRLLSWNYPSLFSASVAA--NTFASCGLAAVTLAMSVGSTTLVPSRMRGKLGGLYNMAESLGRFLGPAGFAITYAWSVSPSSSAAGFDWVNFRFVFWVSAVLLALCAVLAW 373          
BLAST of mRNA_L-elsbetiae_contig6742.15491.1 vs. uniprot
Match: A0A6H5K5T8_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T8_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.290e-17
Identity = 70/213 (32.86%), Postives = 109/213 (51.17%), Query Frame = 3
Query:  267 LLAEPHIRFLLFTFAIYSFAIAGVEDVYALWALSTVPKGGLDWSTKEIGQVLLMCGMMVFTFELLVLPVLLKRVGICTCRRVGAAILVPAFLLLPQLSSLQGTGYPIIVASVAVLFTIYVACDSFYTGISLAINNACS-PDR-RGQLNGIASSVASVAGAVGPAVWLALFAFSIEGGRHAFPFD---FHLTFYVMAALRLAVAFCMWDASLQE 890
            LLA PH++ LL    +      G ++ Y L+ALST   GGL W+T +IG+VL+M G+ +  F+LL+LP L+K VGI   +RVG  +   AF+ +P + SL      +  ASVAV    + +C      +++++ +    P R RG+L G+ +   S+   +GPA +   +A+S+     A   D   F   F+  A L    A   W     E
Sbjct:  337 LLATPHVKTLLTLGCVVMALQIGFDEAYPLFALSTPDVGGLGWNTLQIGKVLVMTGLFMACFQLLLLPPLIKVVGITKWQRVGFCVGALAFIAIPSVRSLSWNYPSLFSASVAV--NTFASCGLAAVALTMSVGSTTLVPSRMRGKLGGLYNMAESLGRFLGPAGFAISYAWSVSPSSSAAGVDWVNFRFVFWASAVLLAMCAVLAWSTLTAE 547          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6742.15491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZQ3_9PHAE1.540e-6154.81MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LFV4_ECTSI6.090e-5751.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRH7_ECTSI2.190e-4442.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRH9_ECTSI1.570e-4337.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0M0_ECTSI1.130e-1831.39MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JH24_9PHAE1.280e-1831.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAX4_9PHAE3.550e-1837.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX19_9PHAE4.570e-1839.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJX7_ECTSI1.630e-1733.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5T8_9PHAE2.290e-1732.86MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6742contigL-elsbetiae_contig6742:4158..6660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue5.2e-28
Seed eggNOG ortholog2880.D8LFV4
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1344
Cds size489
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816746.8585575-UTR-L-elsbetiae_contig6742:4157..42181622816746.8585575-UTR-L-elsbetiae_contig6742:4157..4218Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6742 4158..4218 +
1691683782.7051485-UTR-L-elsbetiae_contig6742:4157..42181691683782.7051485-UTR-L-elsbetiae_contig6742:4157..4218Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6742 4158..4218 +
1622816746.872294-UTR-L-elsbetiae_contig6742:4535..47941622816746.872294-UTR-L-elsbetiae_contig6742:4535..4794Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6742 4536..4794 +
1691683782.7235522-UTR-L-elsbetiae_contig6742:4535..47941691683782.7235522-UTR-L-elsbetiae_contig6742:4535..4794Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6742 4536..4794 +
1622816746.8836758-UTR-L-elsbetiae_contig6742:5112..52081622816746.8836758-UTR-L-elsbetiae_contig6742:5112..5208Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6742 5113..5208 +
1691683782.7351978-UTR-L-elsbetiae_contig6742:5112..52081691683782.7351978-UTR-L-elsbetiae_contig6742:5112..5208Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6742 5113..5208 +
1622816746.8953884-UTR-L-elsbetiae_contig6742:5396..54051622816746.8953884-UTR-L-elsbetiae_contig6742:5396..5405Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6742 5397..5405 +
1691683782.7466438-UTR-L-elsbetiae_contig6742:5396..54051691683782.7466438-UTR-L-elsbetiae_contig6742:5396..5405Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6742 5397..5405 +
1622816746.9386919-UTR-L-elsbetiae_contig6742:6230..66601622816746.9386919-UTR-L-elsbetiae_contig6742:6230..6660Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6742 6231..6660 +
1691683782.7788463-UTR-L-elsbetiae_contig6742:6230..66601691683782.7788463-UTR-L-elsbetiae_contig6742:6230..6660Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6742 6231..6660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816746.9107075-CDS-L-elsbetiae_contig6742:5405..56181622816746.9107075-CDS-L-elsbetiae_contig6742:5405..5618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6742 5406..5618 +
1691683782.756421-CDS-L-elsbetiae_contig6742:5405..56181691683782.756421-CDS-L-elsbetiae_contig6742:5405..5618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6742 5406..5618 +
1622816746.9251797-CDS-L-elsbetiae_contig6742:5954..62301622816746.9251797-CDS-L-elsbetiae_contig6742:5954..6230Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6742 5955..6230 +
1691683782.766128-CDS-L-elsbetiae_contig6742:5954..62301691683782.766128-CDS-L-elsbetiae_contig6742:5954..6230Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6742 5955..6230 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6742.15491.1prot_L-elsbetiae_contig6742.15491.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6742 5406..6230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6742.15491.1

>prot_L-elsbetiae_contig6742.15491.1 ID=prot_L-elsbetiae_contig6742.15491.1|Name=mRNA_L-elsbetiae_contig6742.15491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
MCGMMVFTFELLVLPVLLKRVGICTCRRVGAAILVPAFLLLPQLSSLQGT
GYPIIVASVAVLFTIYVACDSFYTGISLAINNACSPDRRGQLNGIASSVA
SVAGAVGPAVWLALFAFSIEGGRHAFPFDFHLTFYVMAALRLAVAFCMWD
ASLQEEGVADHN*
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mRNA from alignment at L-elsbetiae_contig6742:4158..6660+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6742.15491.1 ID=mRNA_L-elsbetiae_contig6742.15491.1|Name=mRNA_L-elsbetiae_contig6742.15491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2503bp|location=Sequence derived from alignment at L-elsbetiae_contig6742:4158..6660+ (Laminarionema elsbetiae ELsaHSoW15)
CACTGGCGCTCTGTTTCTTTCCAAACACGGTGCCGAAGGCGAAGACCGAC ACGATCGAGCTGTGAGAAGTCTATTCCCGGCCGCGCTATCCGTTGCAGAC GCGCACGTGGTTTTCGCTTGATGCTTGGAAAAGCGGTCAATGTTGGTATA TCGCAGCTCAGGTGTCGTCGCCCCCCCTGCTTCCTTACAGTGGAGCCCGG CAGTGTTGCATCTATTAACGATCCTCAGAACGCTGGGAGATAACATCCTT CTTCGGAGGGGTGACAACACTTGAAATGCAAGAACACTACATACGCAATG AACTAACTTCCTACACTTCCTGCAACCACCACGCGTTCGCACCCGGGTGC CCATTCCCACTTTTTTCTACGTACGCAGCACTTCGTCGTTTCCTGGTTCT TCTTGCAGTGACGACGACGACGACGACGACGAGGAAAGCACCGCTGACGG GCGCGATCTTGCCTTCAGTAGCGCTAGCGCTCCCGTGAACAACGCATCAT GGGCCGACCGGGGAAACGAGCCTTGTGCGCTCTCTGTGGCCGTTGAGAAA GAAGGCTTTGGTGGCAGCACCAAGGGGGGGAGCTTGCTTGCGGAACCGCA CATACGCTTCCTCCTGTTCACCTTCGCAATATACTCGGTGAGACGCGGTA GCTCTTCGTTCGTGGGATAAGAGAGAAAATATTCATCATCAGTTTTGACG GTGGTGGAGAGGGAACCCATGGGAGTCCGGCGTTCGGGGTACTATGCCGT TGACCTAAGTCGTGGAGCACAATGATGCCACGATAAATCACCGACTGCAA CCATTCCCATTTTTCGCACTCGTAACCATGTGCCTACTCTCGAATGCCGT CACCACGGCTGGGGGGCGTTCTTCATGTCGGCATGATGACATCACCCACC CCCTCTTCGCCCCCCCTCGCGTCTACCTCCGCCTCTTTGTTCCATGGCCT CGAAGTTTGCTATCGCCGGGGTCGAGGATGTGTATGCGTTGTGGGCTCTC AGCACTGTTCCCAAAGGAGGGCTGGACTGGTCCACAAAGGAAATCGGACA GGTGGCGTACCCGGTGTGATTTCACCCACACCTATCATGCCATGTGGTGC TCTGCATCGTGGTACGTGCCTGTCCATCCTCCACAGCTGCCCCTTTGCTG TACTTATGTGCCCTTTTGCGACGGTGTTGCTTCGCTCTACAGTGCCGTGT TGTCCGAATTTTACCTGCGTCTCCTCTCGCTACATGCAGGTGCTCCTGAT GTGTGGGATGATGGTCTTCACCTTCGAGCTGTTGGTCTTGCCAGTGCTCC TTAAACGGGTTGGTATCTGCACATGCCGGCGTGTGGGGGCCGCCATTCTC GTACCAGCCTTCCTACTCCTCCCCCAACTCTCTAGCCTGCAAGGTACCGG CTACCCGATCATCGTGGCCTCCGTCGCGGTCCTGTTCACTATATACGTAG CGTGCGACTCGGTGAGTGCGGATGGAGTAGGGGTTGAAGGCTGAACCTCT TACCATACACATAGGTGGTGGTTCATGTACCATCTTTTGTAGGAGGCAGA GCGGGCCACACGCGATCGCTGTCTGCTTCTGTGGCGAGTTCATCTCCCTG TCGCATCGCGCACTTTGTCCCTTCCGAATGTTGGTGGTGCTCGGTACTTG AAGTAGGAGCCGTGTCCTGAGTTTGCAAAGTCGAAAGTCAACGGTTAACG CAACCGAAACTAGAGTTTGACTCCCTCAACCCTTCCTCCTCTTCTTTCTC TGCTCACACTCCAACACGGACGCAATTGTGCATTGCTACATGCTCAGTTC TATACGGGCATCTCCTTGGCCATCAACAACGCCTGTTCTCCCGACCGTCG CGGCCAGCTGAACGGCATAGCGTCGTCTGTCGCGTCGGTGGCAGGCGCCG TAGGTCCTGCGGTGTGGTTAGCCTTGTTCGCGTTCTCCATCGAGGGCGGC CGTCACGCGTTCCCGTTCGACTTCCACCTTACGTTCTACGTCATGGCGGC GCTGAGGCTGGCTGTCGCCTTTTGTATGTGGGACGCGAGTCTCCAAGAAG AGGGTGTTGCCGATCATAACTAAAGCGGGGTCATGGAGGATGAGGAGATC CCGGAGGCCACGAGCGTCAACCATAATAAGTAGAGTCGGGTGTGGATGAG CGCGGTGGTAGGCTCGAAACGGCGGCGGGAAAGTTTCCGCACCGGCGTTT TAATTTCCACGACGTTTAGGTCGATTGCTTGGTGTTGTTGTGGTTTCCCC GCACACCAAATTGACAAGAAAGGTTCGTGTTGAGGAGCACAATGACCACC GAACTACCAGTCGGGCGACTGGTAGTTCAATCGGCATTGTGCCTCTCAGC AAATAGGCTGACCGGTAGTCCAGTGGCCATGGTGCTTCTCAACAATTCGT ACTAAATACTGCAGACTTGATTTTTTCGTGTGTTGACTAGAGGGACGGCA CGTTGTGTATTATTTTTGCGAAGAAGACGGCATATGTTAAGCATACTGGG GGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6742:4158..6660+

>mRNA_L-elsbetiae_contig6742.15491.1 ID=mRNA_L-elsbetiae_contig6742.15491.1|Name=mRNA_L-elsbetiae_contig6742.15491.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig6742:4158..6660+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGGGATGATGGTCTTCACCTTCGAGCTGTTGGTCTTGCCAGTGCT
CCTTAAACGGGTTGGTATCTGCACATGCCGGCGTGTGGGGGCCGCCATTC
TCGTACCAGCCTTCCTACTCCTCCCCCAACTCTCTAGCCTGCAAGGTACC
GGCTACCCGATCATCGTGGCCTCCGTCGCGGTCCTGTTCACTATATACGT
AGCGTGCGACTCGATGTGTGGGATGATGGTCTTCACCTTCGAGCTGTTGG
TCTTGCCAGTGCTCCTTAAACGGGTTGGTATCTGCACATGCCGGCGTGTG
GGGGCCGCCATTCTCGTACCAGCCTTCCTACTCCTCCCCCAACTCTCTAG
CCTGCAAGGTACCGGCTACCCGATCATCGTGGCCTCCGTCGCGGTCCTGT
TCACTATATACGTAGCGTGCGACTCGTTCTATACGGGCATCTCCTTGGCC
ATCAACAACGCCTGTTCTCCCGACCGTCGCGGCCAGCTGAACGGCATAGC
GTCGTCTGTCGCGTCGGTGGCAGGCGCCGTAGGTCCTGCGGTGTGGTTAG
CCTTGTTCGCGTTCTCCATCGAGGGCGGCCGTCACGCGTTCCCGTTCGAC
TTCCACCTTACGTTCTACGTCATGGCGGCGCTGAGGCTGGCTGTCGCCTT
TTGTATGTGGGACGCGAGTCTCCAAGAAGAGGGTGTTGCCGATCATAACT
AATTCTATACGGGCATCTCCTTGGCCATCAACAACGCCTGTTCTCCCGAC
CGTCGCGGCCAGCTGAACGGCATAGCGTCGTCTGTCGCGTCGGTGGCAGG
CGCCGTAGGTCCTGCGGTGTGGTTAGCCTTGTTCGCGTTCTCCATCGAGG
GCGGCCGTCACGCGTTCCCGTTCGACTTCCACCTTACGTTCTACGTCATG
GCGGCGCTGAGGCTGGCTGTCGCCTTTTGTATGTGGGACGCGAGTCTCCA
AGAAGAGGGTGTTGCCGATCATAACTAA
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