mRNA_L-elsbetiae_contig66.15313.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig66.15313.1
Unique NamemRNA_L-elsbetiae_contig66.15313.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig66.15313.1 vs. uniprot
Match: D8LGD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD3_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 9.010e-46
Identity = 101/152 (66.45%), Postives = 114/152 (75.00%), Query Frame = 1 
Query:    1 RGELQSRRSDSAPSLLPPIEGRLTLGTPPSPCTLRAVLSTSRSVAVEVPLGFGLVPEAGRAPNGD--ERFQALDPKSARRDLRAMLRARAQWQRQRMAEMAVPGAQQQRQG---GGSGLDAVTERFLRETRALDRDSEHLDDRLRGRWQRKK 441
            RGE QSRRSDSAPSLLPPIEG LT GTPPSP +L+ VLSTS SVAV VP GFGL   AG A  G+  +  +    KS  R+LRAMLRARA+WQ QRMAEMA PG+ +QRQ    GGSGLDA+ ERFLRET  LDRDS+ LD RLRGR + K+
Sbjct: 2254 RGEAQSRRSDSAPSLLPPIEGWLTEGTPPSPNSLKTVLSTSTSVAVGVPSGFGLASVAGVASKGEGGKIVRVRSSKSTSRELRAMLRARARWQSQRMAEMATPGSTEQRQQQGWGGSGLDALAERFLRETDTLDRDSKDLDTRLRGRQKNKR 2405
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BLAST of mRNA_L-elsbetiae_contig66.15313.1 vs. uniprot
Match: A0A6H5KU38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU38_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 1.670e-45
Identity = 99/146 (67.81%), Postives = 111/146 (76.03%), Query Frame = 1 
Query:    1 RGELQSRRSDSAPSLLPPIEGRLTLGTPPSPCTLRAVLSTSRSVAVEVPLGFGLVPEAGRAPN--GDERFQALDPKSARRDLRAMLRARAQWQRQRMAEMAVPGAQQQRQGG--GSGLDAVTERFLRETRALDRDSEHLDDRLRGR 426
            RGE QS+RSDSAPSLLPPIEG LT GTPPSP +L+ VLSTS SVAV VP GFGL   AG A    G    +    KS RR+LRAMLRARA+WQ QRMAEMA PG +Q++Q G  GSGLDA+ ERFLRET  LDRDS+HL+ RLRGR
Sbjct: 2202 RGEAQSQRSDSAPSLLPPIEGWLTEGTPPSPSSLKTVLSTSTSVAVGVPSGFGLASVAGVASKREGGNIVRVRGSKSTRRELRAMLRARARWQSQRMAEMATPGTEQRQQDGLGGSGLDALAERFLRETDTLDRDSKHLNIRLRGR 2347
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig66.15313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGD3_ECTSI9.010e-4666.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU38_9PHAE1.670e-4567.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig66contigL-elsbetiae_contig66:35180..36915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size462
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816730.041224-CDS-L-elsbetiae_contig66:35180..354061622816730.041224-CDS-L-elsbetiae_contig66:35180..35406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig66 35181..35406 -
1691683770.745554-CDS-L-elsbetiae_contig66:35180..354061691683770.745554-CDS-L-elsbetiae_contig66:35180..35406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig66 35181..35406 -
1622816730.0521665-CDS-L-elsbetiae_contig66:36682..369151622816730.0521665-CDS-L-elsbetiae_contig66:36682..36915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig66 36683..36915 -
1691683770.7548437-CDS-L-elsbetiae_contig66:36682..369151691683770.7548437-CDS-L-elsbetiae_contig66:36682..36915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig66 36683..36915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig66.15313.1prot_L-elsbetiae_contig66.15313.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig66 35181..36915 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig66.15313.1

>prot_L-elsbetiae_contig66.15313.1 ID=prot_L-elsbetiae_contig66.15313.1|Name=mRNA_L-elsbetiae_contig66.15313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
RGELQSRRSDSAPSLLPPIEGRLTLGTPPSPCTLRAVLSTSRSVAVEVPL
GFGLVPEAGRAPNGDERFQALDPKSARRDLRAMLRARAQWQRQRMAEMAV
PGAQQQRQGGGSGLDAVTERFLRETRALDRDSEHLDDRLRGRWQRKKKRR
HGG
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mRNA from alignment at L-elsbetiae_contig66:35180..36915-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig66.15313.1 ID=mRNA_L-elsbetiae_contig66.15313.1|Name=mRNA_L-elsbetiae_contig66.15313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1736bp|location=Sequence derived from alignment at L-elsbetiae_contig66:35180..36915- (Laminarionema elsbetiae ELsaHSoW15)
CGGGGGGAGCTGCAGAGCCGGAGGTCGGACTCCGCCCCGTCACTGCTGCC
GCCCATCGAGGGGCGGCTGACGCTGGGCACGCCGCCATCCCCATGCACGC
TAAGAGCAGTGCTGTCGACGTCGAGAAGCGTAGCGGTAGAGGTACCGCTC
GGGTTCGGCCTGGTTCCAGAGGCGGGGCGAGCGCCGAACGGGGACGAGCG
CTTCCAAGCTCTTGACCCCAAGAGCGCTAGAAGGTATTTCTTAGATAGCT
ACAGGTATTTACTCCATAAATACATACATCTACATCGTGAAGCCTTCTTT
CTTTACGTTGATATTGCGCGAGTTAAATACACAAGAGAAAATCAGTTGTG
ATCTATCGAACCGATTTTGCTAGACTCCACAAAAACGTTTGGGCGAATTA
ATCCCCATGAACCACCCCCCGTCCGTGTCTCTTCGATATCCAAATGTGTT
GTGAGTCTTCTCCTGTATTGAGGGTGTCACCGTCCGTGGTCCACGCATAT
ATAGAGGTAAAATCCTCGAAGATTTACACAGCATTCCTATGTTGAGTCAA
ACCCGCCACCCCCCCCGCTTCACGGCAGTTTTTTCTTCCAAGAAGGCCTG
ACGGAAGCCGGCGCGCAATACTCAGGCCCCTTACTGATGACTCGCTGTGT
GCCTTGCATGTATGTACCGTAGTATCTTCTGAGCTCGCCCCCCTTCCCCC
CAAAAACCCCCAGCGAAACAGGCACAGAAACCTTGAGATAGCCCCGGGGC
ATATCTTTTTTTTGTTTTGATATTAGTTCGCACCCCCTACCTCGGAGAAC
GCCCTGGGGTGGTATTTTTCCAGGATGTTTTGTGCATGCCCCATGGGGCG
TTTCGTGTGTGTCGACGGCTCGTGTGCATTCACGGTGCCTACTCGGGCAT
TCGTTGTGGTTCTCAGCGTTGGTGTCTTTGTTTTTTATTCAAGTGCTGTT
GTCGTTGGCATTCCTTCGGCTGAATTATTTCCATCATCCCATCGGGGCTT
TGTCACCCCGGGGCTTTTTGGCTTTTTAGACTAGTACAATAAGAGCCTAT
GGCCCGGGGCCTTTTTGCCCCGGGGCTTATTTTTGTTTAAAAAAAAGATG
GCCCCTCTACCTTTGAGATAGCCCCGGGGCGAATTTTTAGCCGCCGTACT
TAGGTTCGCCCCCCGAGGCGAGCTTAGAGGATGTTACGGTACATAGATTG
GACAATTTACCAAAAAATAAATGAGCTTTCCTTCTGGAGAAACTCCGGGC
AGCAAGACCCCCGAGCTTCGAACGAGATAACACTGCATGACTAGAACACT
ACTGTCTGTACTACTACATACATTCCTGCACCTGACTTTTTTATGAATGT
GTATTGGGCTCTCTTCCCCCCTCCCTCGACCCCAAGCAGCAGCGTAACAA
ACGCTCTCATGAACCCCGGAGCACTCTCATTTTGCTCGATTGGCTTGTGT
AAGTCAACTTCTCAACACTTATTTAGATAAATCCACAGTGTATATCTATG
TAATGGCAGGGACCTACGGGCGATGCTCCGCGCTCGGGCTCAGTGGCAGC
GGCAGAGGATGGCGGAGATGGCGGTGCCGGGCGCACAGCAGCAGCGGCAG
GGGGGCGGGTCGGGGCTCGACGCCGTTACAGAGCGGTTTCTTCGTGAGAC
CCGCGCGTTAGATCGCGACAGCGAACACCTCGACGACCGCCTCCGAGGGC
GGTGGCAGAGAAAAAAAAAGCGAAGGCATGGAGGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig66:35180..36915-

>mRNA_L-elsbetiae_contig66.15313.1 ID=mRNA_L-elsbetiae_contig66.15313.1|Name=mRNA_L-elsbetiae_contig66.15313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig66:35180..36915- (Laminarionema elsbetiae ELsaHSoW15)
CGGGGGGAGCTGCAGAGCCGGAGGTCGGACTCCGCCCCGTCACTGCTGCC
GCCCATCGAGGGGCGGCTGACGCTGGGCACGCCGCCATCCCCATGCACGC
TAAGAGCAGTGCTGTCGACGTCGAGAAGCGTAGCGGTAGAGGTACCGCTC
GGGTTCGGCCTGGTTCCAGAGGCGGGGCGAGCGCCGAACGGGGACGAGCG
CTTCCAAGCTCTTGACCCCAAGAGCGCTAGAAGCGGGGGGAGCTGCAGAG
CCGGAGGTCGGACTCCGCCCCGTCACTGCTGCCGCCCATCGAGGGGCGGC
TGACGCTGGGCACGCCGCCATCCCCATGCACGCTAAGAGCAGTGCTGTCG
ACGTCGAGAAGCGTAGCGGTAGAGGTACCGCTCGGGTTCGGCCTGGTTCC
AGAGGCGGGGCGAGCGCCGAACGGGGACGAGCGCTTCCAAGCTCTTGACC
CCAAGAGCGCTAGAAGGGACCTACGGGCGATGCTCCGCGCTCGGGCTCAG
TGGCAGCGGCAGAGGATGGCGGAGATGGCGGTGCCGGGCGCACAGCAGCA
GCGGCAGGGGGGCGGGTCGGGGCTCGACGCCGTTACAGAGCGGTTTCTTC
GTGAGACCCGCGCGTTAGATCGCGACAGCGAACACCTCGACGACCGCCTC
CGAGGGCGGTGGCAGAGAAAAAAAAAGCGAAGGCATGGAGGAGGACCTAC
GGGCGATGCTCCGCGCTCGGGCTCAGTGGCAGCGGCAGAGGATGGCGGAG
ATGGCGGTGCCGGGCGCACAGCAGCAGCGGCAGGGGGGCGGGTCGGGGCT
CGACGCCGTTACAGAGCGGTTTCTTCGTGAGACCCGCGCGTTAGATCGCG
ACAGCGAACACCTCGACGACCGCCTCCGAGGGCGGTGGCAGAGAAAAAAA
AAGCGAAGGCATGGAGGA
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