mRNA_L-elsbetiae_contig6598.15306.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6598.15306.1
Unique NamemRNA_L-elsbetiae_contig6598.15306.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6598.15306.1 vs. uniprot
Match: D7FH66_ECTSI (RNA-binding S4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH66_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 6.570e-13
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:  124 VSTVEASLLLVSVASAGMDMSRSKISAAVKSGLVLVNWKAATSGTT 261
            VSTVEASL L SVASAGM MSRSK+SAA+KSGLVLVNWKAA+SGTT
Sbjct:   76 VSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAASSGTT 121
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BLAST of mRNA_L-elsbetiae_contig6598.15306.1 vs. uniprot
Match: A0A6H5J7Q1_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Q1_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.450e-11
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:  124 VSTVEASLLLVSVASAGMDMSRSKISAAVKSGLVLVNWKAATSGTT 261
            VSTVEASL L SVASAGM MSRSK+SAA+KSGLVLVNWKAA SGTT
Sbjct:  245 VSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAAGSGTT 290
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BLAST of mRNA_L-elsbetiae_contig6598.15306.1 vs. uniprot
Match: A0A836CE46_9STRA (S4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE46_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 3.910e-5
Identity = 28/47 (59.57%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:  112 PHVK--VSTVEASLLLVSVASAGMDMSRSKISAAVKSGLVLVNWKAA 246
            P +K  V++VEASL L ++ASAGM MSRSK++ A+KSG+V VNW+ A
Sbjct:  183 PPIKKHVTSVEASLRLDAIASAGMGMSRSKMADAIKSGMVFVNWREA 229
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BLAST of mRNA_L-elsbetiae_contig6598.15306.1 vs. uniprot
Match: A0A1X6PFP3_PORUM (S4 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PFP3_PORUM)

HSP 1 Score: 50.1 bits (118), Expect = 4.340e-5
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:  112 PHVK-VSTVEASLLLVSVASAGMDMSRSKISAAVKSGLVLVNWKAATS 252
            P VK ++TVEAS+ L +VASAG  +SRSK++AAVKSG VL+NW+ A+S
Sbjct:  263 PTVKELTTVEASMRLDAVASAGFGVSRSKMAAAVKSGDVLINWREASS 310
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6598.15306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FH66_ECTSI6.570e-1386.96RNA-binding S4 n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5J7Q1_9PHAE1.450e-1186.96S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A836CE46_9STRA3.910e-559.57S4 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A1X6PFP3_PORUM4.340e-562.50S4 domain-containing protein n=1 Tax=Porphyra umbi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6598contigL-elsbetiae_contig6598:844..3786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue3.4e-10
Seed eggNOG ortholog2880.D7FH66
Hectar predicted targeting categoryother localisation
EggNOG free text desc.isoleucyl-tRNA aminoacylation
EggNOG OGsCOG2302@1,KOG4837@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size263
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816729.0460691-CDS-L-elsbetiae_contig6598:843..9811622816729.0460691-CDS-L-elsbetiae_contig6598:843..981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6598 844..981 -
1691683770.2006392-CDS-L-elsbetiae_contig6598:843..9811691683770.2006392-CDS-L-elsbetiae_contig6598:843..981Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6598 844..981 -
1622816729.05679-CDS-L-elsbetiae_contig6598:3663..37861622816729.05679-CDS-L-elsbetiae_contig6598:3663..3786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6598 3664..3786 -
1691683770.2144825-CDS-L-elsbetiae_contig6598:3663..37861691683770.2144825-CDS-L-elsbetiae_contig6598:3663..3786Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6598 3664..3786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6598.15306.1prot_L-elsbetiae_contig6598.15306.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6598 844..3786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6598.15306.1

>prot_L-elsbetiae_contig6598.15306.1 ID=prot_L-elsbetiae_contig6598.15306.1|Name=mRNA_L-elsbetiae_contig6598.15306.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
TNHRRTQEATPDRSSAEPLLACVYAWRRDTGGRDRAVPHVKVSTVEASLL
LVSVASAGMDMSRSKISAAVKSGLVLVNWKAATSGTT
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mRNA from alignment at L-elsbetiae_contig6598:844..3786-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6598.15306.1 ID=mRNA_L-elsbetiae_contig6598.15306.1|Name=mRNA_L-elsbetiae_contig6598.15306.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2943bp|location=Sequence derived from alignment at L-elsbetiae_contig6598:844..3786- (Laminarionema elsbetiae ELsaHSoW15)
ACGAACCACCGGCGGACACAAGAAGCGACGCCGGACAGAAGCAGCGCCGA
ACCACTCTTAGCATGTGTTTATGCTTGGCGCCGGGATACGGGAGGTAGAG
ATCGGGCGGTGCCACACGTGAAGGTATCTTTGCGTTTGTTTTTTTTGTCT
TGTCACTCTCCTGCTGCCCTTGATCTCTTTCCCTGGCCTTGCTCGAAACC
TGCTGACCTCTGGCACACCCCCCGACTGGCCACCTGTTCCTGCTGCCCTT
GTCTGAGCCCCTCCGCACTTCGCTCTCGAAAGAGATGCACTGACCTGGTG
GCAGACCATGGTTTGGAGTTGCTTAGGTTTGTTTCGAATGCTGCAAAACA
CGCCAAATCAATGCTTAAGCTAGGCAACCAGGTTACCGCCTTTATTGAAC
CGCACTGCGGCTTTCGCTCGCGGCTAGCATACGTACGTGCATGTGTGGTT
CGAGTTGCCATAATCGTCGGAGTTTCTTCACCGGGGCGGTGCATTTTCAC
CCCCCCATCACGTTTTCGGCCTGGCACCATTGGTTGGTTGATTTGTCCCC
GGGGGGATCGGGTTTTTGTGGAAGAACCCCCCCCCGTTCCCTGGTATTTC
GATTTTTCACCGGGGTACCATTTTCCACGAGCGTTTTCCCCCCGGCAGGA
TGCATCTTCCCCAATTTTGAGCCGGCTTTTTTTGGCATCGCCAAGCACTA
CCAGCATGATGAATGGTAAAAATAACAGGCACAACAAGGCTCGTGGCGCT
TGGAGTCTGCCGCTGGTTTTGTTGGGCAAAATTAATTCGTTTTGTCTTCG
ATGTATCCTCTCCGTCACCCTATACTACTACACTGTAATACGACCACAGG
AAAGCATTGGATACCGTAATACGCCGATTATTACGGATGTTATTTTTCGA
ATTTTATTTGGGGGGGGGGGGGGGGTCGATTATTTCCCTCGGAAGGATTT
GCAAGACAAATAATAAGCTGAGCCGAGAGGCCTTCTTACGGCTTGAGGGG
CAGTTTGTTTTTCGTGGGGAAAAATATGCTATTGTGCATAACAGGATGCA
CAGTTCACGTTTTTTGCTCATATTCGGCCGACAAGTGGCAGAGCGCTCTT
ATTTTGGAGCGCCTGCGGAGGGCATGTGCATGACCGCATGCCATTGACTG
CTGTTTATTGATCTCGTGAGCGGAAAACCTCTCTCTGACACATGATTTTG
ACTTGCAACACAACCCAGCGACGAAACAAAACGAAGAGTCCAAAATGCTC
CGCATATAAACGAACTTCAGTCGACGTTGGCTGCTCGCGTGCACTCAACA
CTGCCCTGGTTTTGGGACGCCTGCAGAGGCCATGAGTATGGCCCCACGCC
ATTGGCTGCAGGTTGTGGTTATTACTGACCTGAGGCCTCCGTCGGGCATG
CGGTTTTTGATTGACACAAGTCAACACAAGGACGAAAAAATGCAAGAAGA
GTCGAAAACGTTCCGCATTGAAATCAACTTCAGTCGACGTTGGCTGGTCG
CGCGCACTCAGTTCTTGGCCGCGTGCCCTGGCTTCGGGATCCCTGCAGTG
GCCTTGTGTATGATCGCACGCCACTGGGTGCAGTTTGTGGTTATTACTGG
CCCGAGGCCTTTGTTGAGCATGCATTTTTTGCTTGACACACATGAAGCAG
GCACAAAAACGGCTCTTTGAACCCCCAACGCATATTGGGAGCAGCGCAGT
GTTTGCATGCTGACGGTTTTAGCTCGTGCGCTGAACGCCCTGAATTTTGG
ATGCCTGCGGAGGGTTTGTGTATGGTCTCACGGTGTTGGCCTCTGTTTGG
GCAGTAGTTAGAGTAGTTGCTCATTCTGGCAAGATCACCTGTGTTGTCGG
GTGTGACCCCCCCCAAATAAAATTTATAATCGACGTCTGCTCCAGGTTTT
ATTTTGGCTGAATATTTCACTGGGCGACTGGATTCCTAGAAATATTTCGT
CGTCTCATAATTTCTGAGATGGTATTTGCCCAAATTATTAACCGTAAGAA
GCCTTAGTTTTTTATTTCCAGGCAAATTTACCCCCCCCCCCAAATAAAAT
TCGAAAAATAACAACCGTAAGAATCGGCCTTACGATATGCCGAAAATTGT
TCAATTTTATTATTTTCCAGATCTCAACACCAGCAAATGTATTCTCTCCG
GTCACCCAATGAACGCAACCCAAACCTCTGCTACATCACCACCACCCTTG
CGCAGATCTTATGCATTGTGGGTTCCACTCTGTGTGTGCTGGTTTGTGGA
CCGCCAACTTTTTGTTCATGCCCCCGGGGTAACTTCCCCAGGGTACATAC
ATAGCAGCGTCCAGCAAAAATACAACCTACCCCCCTGGTTTTTTTAACCT
TCACCGGGGAAAGCGATTTAGAAAAAACACTTCCGCACCCCCAGTGAAAA
CACTACGACGATTACGGTAGATCGTGTTGTGCGGGGTGATGAACAGCCTC
AACTCCGCGCAAGGGAGGCGGACGGTTGCACCGTGAAGTGTTGACACGCT
GAGACAAGTGTGACTGACCCACAGCTGTCTGTGGAAGTGGCGACACCCGT
GACGACGAAGCAACTCGTCCTCTGTTGCTGCTGTTGTTGTTGATATTCTC
ACATTCGCTCGTAACGGCGAATTTGCCAACCGCGATACAACCTAGCAAGA
TCACGGTCCGTGGCCATGCGCAAAATTCGAAGCAAGCGTTGTTGGTGGTA
AACCTTAACCTCTTCGCCGTCGAACTGCAGATGCTCATTCAGGCGGGTTG
ACACACACTGACCTCCGTCTTCGTCTTGTGTTCCTACCCCGGACTGATTT
GTCAGGTGAGCACGGTGGAGGCCTCGCTGCTCCTGGTCTCCGTGGCGAGC
GCCGGCATGGACATGAGCCGCAGCAAGATATCGGCCGCGGTCAAGAGCGG
CCTGGTGCTGGTCAACTGGAAGGCGGCAACCTCCGGGACGACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6598:844..3786-

>mRNA_L-elsbetiae_contig6598.15306.1 ID=mRNA_L-elsbetiae_contig6598.15306.1|Name=mRNA_L-elsbetiae_contig6598.15306.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig6598:844..3786- (Laminarionema elsbetiae ELsaHSoW15)
ACGAACCACCGGCGGACACAAGAAGCGACGCCGGACAGAAGCAGCGCCGA
ACCACTCTTAGCATGTGTTTATGCTTGGCGCCGGGATACGGGAGGTAGAG
ATCGGGCGGTGCCACACGTGAAGACGAACCACCGGCGGACACAAGAAGCG
ACGCCGGACAGAAGCAGCGCCGAACCACTCTTAGCATGTGTTTATGCTTG
GCGCCGGGATACGGGAGGTAGAGATCGGGCGGTGCCACACGTGAAGGTGA
GCACGGTGGAGGCCTCGCTGCTCCTGGTCTCCGTGGCGAGCGCCGGCATG
GACATGAGCCGCAGCAAGATATCGGCCGCGGTCAAGAGCGGCCTGGTGCT
GGTCAACTGGAAGGCGGCAACCTCCGGGACGACTGTGAGCACGGTGGAGG
CCTCGCTGCTCCTGGTCTCCGTGGCGAGCGCCGGCATGGACATGAGCCGC
AGCAAGATATCGGCCGCGGTCAAGAGCGGCCTGGTGCTGGTCAACTGGAA
GGCGGCAACCTCCGGGACGACT
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