prot_L-elsbetiae_contig6598.15306.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6598.15306.1
Unique Nameprot_L-elsbetiae_contig6598.15306.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length87
Homology
BLAST of mRNA_L-elsbetiae_contig6598.15306.1 vs. uniprot
Match: D7FH66_ECTSI (RNA-binding S4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH66_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 6.570e-13
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0
Query:   42 VSTVEASLLLVSVASAGMDMSRSKISAAVKSGLVLVNWKAATSGTT 87
            VSTVEASL L SVASAGM MSRSK+SAA+KSGLVLVNWKAA+SGTT
Sbjct:   76 VSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAASSGTT 121          
BLAST of mRNA_L-elsbetiae_contig6598.15306.1 vs. uniprot
Match: A0A6H5J7Q1_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Q1_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.450e-11
Identity = 40/46 (86.96%), Postives = 42/46 (91.30%), Query Frame = 0
Query:   42 VSTVEASLLLVSVASAGMDMSRSKISAAVKSGLVLVNWKAATSGTT 87
            VSTVEASL L SVASAGM MSRSK+SAA+KSGLVLVNWKAA SGTT
Sbjct:  245 VSTVEASLRLDSVASAGMGMSRSKMSAAIKSGLVLVNWKAAGSGTT 290          
BLAST of mRNA_L-elsbetiae_contig6598.15306.1 vs. uniprot
Match: A0A836CE46_9STRA (S4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE46_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 3.910e-5
Identity = 28/47 (59.57%), Postives = 38/47 (80.85%), Query Frame = 0
Query:   38 PHVK--VSTVEASLLLVSVASAGMDMSRSKISAAVKSGLVLVNWKAA 82
            P +K  V++VEASL L ++ASAGM MSRSK++ A+KSG+V VNW+ A
Sbjct:  183 PPIKKHVTSVEASLRLDAIASAGMGMSRSKMADAIKSGMVFVNWREA 229          
BLAST of mRNA_L-elsbetiae_contig6598.15306.1 vs. uniprot
Match: A0A1X6PFP3_PORUM (S4 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PFP3_PORUM)

HSP 1 Score: 50.1 bits (118), Expect = 4.340e-5
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 0
Query:   38 PHVK-VSTVEASLLLVSVASAGMDMSRSKISAAVKSGLVLVNWKAATS 84
            P VK ++TVEAS+ L +VASAG  +SRSK++AAVKSG VL+NW+ A+S
Sbjct:  263 PTVKELTTVEASMRLDAVASAGFGVSRSKMAAAVKSGDVLINWREASS 310          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6598.15306.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FH66_ECTSI6.570e-1386.96RNA-binding S4 n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5J7Q1_9PHAE1.450e-1186.96S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A836CE46_9STRA3.910e-559.57S4 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A1X6PFP3_PORUM4.340e-562.50S4 domain-containing protein n=1 Tax=Porphyra umbi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6598contigL-elsbetiae_contig6598:844..3786 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6598.15306.1mRNA_L-elsbetiae_contig6598.15306.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6598 844..3786 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6598.15306.1 ID=prot_L-elsbetiae_contig6598.15306.1|Name=mRNA_L-elsbetiae_contig6598.15306.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
TNHRRTQEATPDRSSAEPLLACVYAWRRDTGGRDRAVPHVKVSTVEASLL
LVSVASAGMDMSRSKISAAVKSGLVLVNWKAATSGTT
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