mRNA_L-elsbetiae_contig6592.15297.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6592.15297.1
Unique NamemRNA_L-elsbetiae_contig6592.15297.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6592.15297.1 vs. uniprot
Match: D7FN22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN22_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 4.620e-14
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:  106 LGPRAVTREDLTRLDDEIANLSKTVEQVAMAHTRQVLRNVAD 231
            LGPRAVTREDLTRLD+EIANLSKTVEQ AMA TRQ+LRNVAD
Sbjct:  793 LGPRAVTREDLTRLDNEIANLSKTVEQAAMAQTRQILRNVAD 834
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BLAST of mRNA_L-elsbetiae_contig6592.15297.1 vs. uniprot
Match: A0A6H5L3T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T3_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 5.890e-6
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 1 
Query:  106 LGPRAVTREDLTRLDDEIANLSKTVEQV 189
            LGPRAVTREDLTRLD+EIANLSKTVEQ+
Sbjct:  738 LGPRAVTREDLTRLDNEIANLSKTVEQL 765
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6592.15297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN22_ECTSI4.620e-1490.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3T3_9PHAE5.890e-692.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6592contigL-elsbetiae_contig6592:3313..8973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_001250.1
Exons2
Model size326
Cds size234
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6592.15297.1prot_L-elsbetiae_contig6592.15297.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6592 3313..8883 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816728.4234183-CDS-L-elsbetiae_contig6592:3312..34981622816728.4234183-CDS-L-elsbetiae_contig6592:3312..3498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6592 3313..3498 +
1691683769.799372-CDS-L-elsbetiae_contig6592:3312..34981691683769.799372-CDS-L-elsbetiae_contig6592:3312..3498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6592 3313..3498 +
1622816728.4345524-CDS-L-elsbetiae_contig6592:8835..88831622816728.4345524-CDS-L-elsbetiae_contig6592:8835..8883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6592 8836..8883 +
1691683769.8100395-CDS-L-elsbetiae_contig6592:8835..88831691683769.8100395-CDS-L-elsbetiae_contig6592:8835..8883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6592 8836..8883 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816728.4449024-UTR-L-elsbetiae_contig6592:8883..89731622816728.4449024-UTR-L-elsbetiae_contig6592:8883..8973Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6592 8884..8973 +
1691683769.8189251-UTR-L-elsbetiae_contig6592:8883..89731691683769.8189251-UTR-L-elsbetiae_contig6592:8883..8973Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6592 8884..8973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6592.15297.1

>prot_L-elsbetiae_contig6592.15297.1 ID=prot_L-elsbetiae_contig6592.15297.1|Name=mRNA_L-elsbetiae_contig6592.15297.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
TNRAVVTGKTAGGGGGDGGGGSGASSSRAASSWARLGPRAVTREDLTRLD
DEIANLSKTVEQVAMAHTRQVLRNVAD*
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mRNA from alignment at L-elsbetiae_contig6592:3313..8973+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6592.15297.1 ID=mRNA_L-elsbetiae_contig6592.15297.1|Name=mRNA_L-elsbetiae_contig6592.15297.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5661bp|location=Sequence derived from alignment at L-elsbetiae_contig6592:3313..8973+ (Laminarionema elsbetiae ELsaHSoW15)
ACGAACCGGGCCGTTGTTACCGGGAAGACCGCTGGCGGCGGCGGCGGCGA
TGGCGGCGGCGGCAGCGGAGCCAGTTCTTCCCGGGCGGCGTCCTCGTGGG
CACGGCTGGGGCCGCGTGCTGTCACCCGCGAGGATCTGACGAGGTTGGAT
GACGAGATCGCCAACTTGAGCAAGACCGTCGAGCAGGTGAAGTTGGGTAC
CGTAGGTGACGCAAGGTACCATACCCCCTGGACCGAATTTTAGAGCTCCA
TTACTCCGTAACCAAGAAGGTGCCAGCACCAAACGACACATTTTCGGACA
GCCCTTGACTAGATCTTTCCAACACCGCCCTTTTTGGCACTGGCACTCTT
CTTGCGGGGGAGGAATCGAGCTTTGAAAATCTGTCCAGGGGGTGTGGTAT
ATTGTATCACCTACGGTGTACATATGTGAAACTATCGTCCCCCGCATTGT
GCAGCGCTTGTGCGTGGAGTTGCCGTGTGTGTTCACGCATGTGCATATGC
ATGTGCGTGTGCGTGTGTGTGTGTGTGTGTGTTTTCATTAGCATCAATCG
CTCTTTGAGAAGACCCCCCAACCTTCAGCGGCCCGAAAAACATTGCAACG
CTCTTTTCTGAAGTGCTGGGACTACCGCTCCTCGAGATGGCTCGACTGAA
CGGCAGAGAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAAT
ACAGTAGTGGTCCCTGTTTAGTGCCGGTATGTGCGCAGACGACTCACCGG
CACTAAACCGGCCACCGGCACTATTGTGAATAGTGCCTCAATAGTGCCGG
ATTGGCACCATTGAGGGTATGAAAATTCCTCAATAGTGCCGTCCGGCACC
ATTGAGGCACTGTTTGATTTCATGGTTTGGCACTTACCCTTTGCGGGGCC
AATAGAGTACGACATAGATCGAATGTAGTGAAGTGATTGCCTGGGCGACG
TGGGCAGTCTTTTCTTACGACACGTGTGGTTTCCACACTGTCGGACACAC
GGAGTTTGCTGTCAAAACATTACTTGCATGTGCACCTTGTCTCTCTACCA
GCCTCAGCACACAACATGTACTGCACAGCCTGAAATGTCGCGTGAACCCT
TCGGATGCATACTACCGCTCTGCCATTTTCCACAGAGATGCACCTCACAG
CTGCCCAATGTTTTTGGAGGCAACAAAGCAGTGACCCTGGCCTCACACGG
ATCAAATAATTTCCGGCAACCTCAACAGCACTCGTCGACAGCGAAAGGAA
GACACACATCATGCACACAATTCACCTTTCGCGTCTAAAAACCCTTGAAA
CGCTCCCGTCCGTACAGTTTGGTATTACTAATTTCACCCCCCCCTGCCCA
GACAAACGATCCTTGAAGTACATGCTCTTTGAGCCCCGCGCCGTCTTCCG
GTCCTCCGAGGTGGAAAGGTACGTGCGCCTGGGCATAAGCTTCCACTGAA
TGCCTGTCTCGTCGACGTTGAAGATGAACGTAGCCGGGTACTTCGCGCAA
AGGGCCCTGATTTCGTCCATGCCCTCCTTGACGGCCTCTTTGTCGACGCT
ACCAGCCTCGCCATGCAGTCTCACGCTCTGGATGTTGTTGCGCTTCACGA
AGTTCTTGGCCCATTTGTCGCCGGCCCTGAAGTCCTCGAGCCTCGCCCTC
ACTCCTTTAGAAGTTGCGGGCTCAGCCAGCAGGGTTATCCTGGCGAAACG
GTCGAAGCTTCGAATGACGTCGCGTGTCACGGGCATTTTGGTCTTCCGGG
CTCTCTCGAGTAGATCAAGCGTAATGGCATCCACCTATTTGCCGTAAAAA
GAAAAGTAAACAATGAAGAGGGTACAGGGATTGAACGGTTAGTTTCGAGC
ATGACATTGCATGCATCCTGCACTGCACCGCGCAGTCACGCTGGATCACG
TAGTACACTTCGAAGGAAAAAATTGTGGGCAAGAAAAAGCAAACAAGCGC
ACCGCTGCAAATGTTTTTGTACTGCGAAAAAAAAAAAAGTGTGTGCGAAA
AAAAACTGGTTTCGCAGATTGTTCGTCGCAGCTGCACAAAAATGAGCGCA
ACGAAGAAAGTTGACAAAAAAGAAAAAACGAACAAGAGAAAGAAAAGAAA
GATAAACAAAAAGAAAGGCGAAAGGAAAGACGAAAGAAAAGGAAGAGCAA
AACAAAAAAAAAGAGCAATAGCGAAAAAAGAAGGCTCAGAAACGAACAAG
GCTCGAAAAAAGAAGAAAGGCCCAAAAAAAAGGTCCTAACAAAAAGGCCC
GAAAAAACAGGCCCGAAAAAACAGGCGACCGCAGCAGCAGTGTAGCGCAC
CTCCGGAAAAGTCCCGTGGTCAATTGCAGATCATACAAATATCTATTATT
TTATGTATCGAGTTCGTCTTCTTTGTGGTACTAAATACAGGCGGTAAGGC
AGCGTGACATGAAGATAAATTTACCCACTTTCAAGTCGAATGAATGTACA
TTTGGTCTAGACTAGTCGCCTATCGTGCAACGTCGCATCCGGCCAAAGTC
TCGACATTTTCGGATGTTTTGGGACGAAAAATGTTTCTTTATGTAGTATT
CGACTTGTGTTTGTTTGACGCACCCAAGAAGATCGGGCAGATAATGTACC
GCTAACCCTACCTCAGAGTTGAAACTGTGGCGAAGTCGCATGAAAGGCCT
TCGAATGCTGCAATATCGCCGAGATCGGCGGACAGGCCCGATGCGCATCC
CAGCAGCAGTAAACAGCTGACGGCGGTAAGGGCTACGCCCTTCTTCCGGA
AGGCCATCATCGCGATCGGTGGTCTTGGGCACTTGGTGACACGCAACATA
TCACGGGGAGAAGACGACAAGCGCGCGACGTGTTCTGTTGGTGCTCAGGG
TTCGAGACGGCATGTGTTCGTGGGCCCTGGCGATAAGCGTGCGAGGAAGG
CTTGGTTGGGTCGACTGAGCAGCGACCGCATCGCGGTCTCTTTTTGCCAG
CAGCACGAGTGGGGTTGAAAAAATGTATTTATGGTCGATTTATGGTGTAT
CTGATCAAAGGTGGAACCTCGCCAAATTGGAGACAGGGGTCCGTGGGATT
AAAGCGGGGTTCCAACAAAATAACAGAGGATTGCGTTATTTATTGGTCGG
GCCGAGTAGAAAAATGAAAAATGCATTTGTCTAAAATACTAAATAGAAGT
ACTTCGTATGTACTCCTTATGTACATCGATGAGCTCCTCTATTCAACACT
ACTCGCGAAAATAAATGGGAAGGGCACACACACACACACACACACACACA
CACACACACACAACTCTGCCAGGCCGACCAACATGAGAGTTTCTTCGCAG
ACCTCGTAAAACAAAATTTTGCCGTACTACATAAAACGCTTTGAGGGAGC
GGCAATATCGAGTTTCGTTTCGCCAACACACCAGGCCACACGCAACTTGT
ACTGAGCGGGCGTCCGCATCACCGATGAATCCCACACATTTATTTCCAGG
AACGCAGAGAGGGTCGGGGCCATTGCATATGTTCTTCTTACTATACCGCC
GCCTGCTGCAGCAGCCTCGGACTCAATCTTCTTCCGCTTAGCCTCCGCTT
CCCGGACCAACCACTCCGAGCACTTGAAGCGGTCCGCTATCTGTTCGTGA
GAGACCTTGGCACCCAGAAGCTTGATCATCTCAACCTTCTGGCTCAAGTC
CGGCCGCGCGCGCTTGGCAGACTTCTCACTCCCTCCGTTCGGTTTCTTCG
GGCGTTTAGTTTGTCCCTTCCCAGCGCCGCCAGCTGCTGTTGCGTTGCGC
TTGCCGTTCTTGGTGACGCACGCACTGCAAATGCGGTTCTCATCGCGGTC
GTCAAACATGCTGCCGCAATTGCCGTGGAGTCGCCCGCCACATTCAATTC
TCCCTTGCAAACGAGGCCATGAGGGGCTTGCGGTGTTCTGTCCTGTTGAA
GGAAGGCACAGCTCACCCTCCGCACATGGCATGGTGCGCCTCTACGTAGA
GCTGTTCGCGCTGCAGAAGCACGTTTATGGGTCTGTCTCTGGTGCGAGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGCGTGAACCGGCACTAT
TGCGGGCTGAGATGGCGCCCAATAGGCACTATAGCGGGGCCGCCCTGTTT
AGTGCCGGTTGGCACTATTGAGGGCGCTGTCTGTGCGCAGAGAATTCACC
GGCACTAAACCGGCAGTTGGCACTATTCAACCGGCACTAAACAGGGACCA
CTACTGTATGTTGATGTGTTTCATGTGGCCGTTTTATTTTCCAGGAGGAT
GTTTTCCGTGGAGATGCCGTGGTATGTAGCCCGTGTGCCGTAACAGGTGA
CACAAGTCACTTTGAGCGCAGCGAAATAGTGTTCGGATGCATATGATAGA
TGATAGATGGGTATGTACCTCCACCCTCTCTGATGCTGTGGCCTACACAC
ATAGATAGGCAGCACTTTTACCTCCACGGGGCCACTTGGGTCTCGGGGCT
CGACCTCATGAGAGAGAAGAAAACGATAGAATACATACATGTGGTTTGAC
CCGGTAGAGATAAATGCAGGGGAGATGGTGAATTTGCACAAGATCATAAC
TTCATCAATCACAGGAGCATGTAAAAAACAAATCGTTGAATCTCACCGAG
TCCCGTCTCGAGGAGGGGAATGCGGGTTGCAATACCTCACACCTATGCCC
CCCGCCGGTCCCACGTTTTTTTCGGCCTATTCCAGTTTGGTAAAACATAT
AGGAAATAGTATAGGGGGGATCCGTTGGGGGATACCCGCATAAAGGGGCC
CCCTTAAAAATCTAGGCTGCCCCCCCCCAAAAAAACAAGTATATAGGAAT
TAGTATACCCCCCCCCCCTTCTCCGATTTCGGTTTAAGTCAGTTTGTTGG
CATAGGTGTGGATTAGGTTTCCATTTTTGATTTACTGTTTTTCTTTCAAA
CCAACGACCAAATCAACCGCCCCACAAACCCACACCCTCCTTCCTCGCCC
ACAGTTCTCGACACTACGCGAATCACCCGGTCCTACATGCGTACTTCGAA
GTATGTACCCAACCAAGGGTCTGTCAGGAGGAAAAATCTGGGCACCCCCC
CGCCGGGGGCATGCGGGTTGCAATACCTCACACCTATATGCCAAAAAACT
GACTTCCGCCGAAATTGGAGGTGGGGGGGTATACTAACTCCTATATATTT
GTTTGGGGGGTGGACGGGAGCCTAGATTCTTCAGGGGGCGCGGTTATGCC
GGTATCCCCCAACGGATCCCCCCTATACTATTTCCTATATGTTTTGCCAA
ACTGGACTAGGCCGAAAAAAACGTGGGACCGGGGGGGCATAGATGTGAGG
CATTGCCGCCGGCGAGCCCTCCCAGCGCGGCCCTTGAAAATTTCGATGTT
GGTCTGTATGTAAGAATTAGTGTAGGGGGATCCGTTCGGGGTTGTTCAAC
TCCCACCCACCACCACGCCTGCTGGAATCTGCGGACCCCCCACTAGAAAG
TATACAGGATACAGTACAGTATACCCCCCCCCCCTTGACCCAACCTGTTC
TACCCTTTGTGTGCCGCACACAGGTGGCGATGGCCCACACAAGGCAAGTG
TTGCGGAACGTCGCCGACTGAAGCGACAAGAACGGGCCGACGGACAGACA
CAGCTACGGCACTTTTGTGGACATTGTTCTCCGACGAAATGAGGGCTCGT
GCTCCTCTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6592:3313..8973+

>mRNA_L-elsbetiae_contig6592.15297.1 ID=mRNA_L-elsbetiae_contig6592.15297.1|Name=mRNA_L-elsbetiae_contig6592.15297.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig6592:3313..8973+ (Laminarionema elsbetiae ELsaHSoW15)
ACGAACCGGGCCGTTGTTACCGGGAAGACCGCTGGCGGCGGCGGCGGCGA
TGGCGGCGGCGGCAGCGGAGCCAGTTCTTCCCGGGCGGCGTCCTCGTGGG
CACGGCTGGGGCCGCGTGCTGTCACCCGCGAGGATCTGACGAGGTTGGAT
GACGAGATCGCCAACTTGAGCAAGACCGTCGAGCAGACGAACCGGGCCGT
TGTTACCGGGAAGACCGCTGGCGGCGGCGGCGGCGATGGCGGCGGCGGCA
GCGGAGCCAGTTCTTCCCGGGCGGCGTCCTCGTGGGCACGGCTGGGGCCG
CGTGCTGTCACCCGCGAGGATCTGACGAGGTTGGATGACGAGATCGCCAA
CTTGAGCAAGACCGTCGAGCAGGTGGCGATGGCCCACACAAGGCAAGTGT
TGCGGAACGTCGCCGACTGAGTGGCGATGGCCCACACAAGGCAAGTGTTG
CGGAACGTCGCCGACTGA
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