mRNA_L-elsbetiae_contig6581.15286.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6581.15286.1
Unique NamemRNA_L-elsbetiae_contig6581.15286.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6581.15286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6581contigL-elsbetiae_contig6581:2708..5308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-24_001560.1
Exons3
Model size2247
Cds size1899
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6581.15286.1prot_L-elsbetiae_contig6581.15286.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6581 3035..5067 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816727.09843-UTR-L-elsbetiae_contig6581:2707..27901622816727.09843-UTR-L-elsbetiae_contig6581:2707..2790Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6581 2708..2790 +
1691683768.8506858-UTR-L-elsbetiae_contig6581:2707..27901691683768.8506858-UTR-L-elsbetiae_contig6581:2707..2790Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6581 2708..2790 +
1622816727.1121545-UTR-L-elsbetiae_contig6581:3010..30341622816727.1121545-UTR-L-elsbetiae_contig6581:3010..3034Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6581 3011..3034 +
1691683768.8616195-UTR-L-elsbetiae_contig6581:3010..30341691683768.8616195-UTR-L-elsbetiae_contig6581:3010..3034Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6581 3011..3034 +
1622816727.1504426-UTR-L-elsbetiae_contig6581:5067..53081622816727.1504426-UTR-L-elsbetiae_contig6581:5067..5308Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6581 5068..5308 +
1691683768.8935025-UTR-L-elsbetiae_contig6581:5067..53081691683768.8935025-UTR-L-elsbetiae_contig6581:5067..5308Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6581 5068..5308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816727.1250138-CDS-L-elsbetiae_contig6581:3034..33271622816727.1250138-CDS-L-elsbetiae_contig6581:3034..3327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6581 3035..3327 +
1691683768.8730998-CDS-L-elsbetiae_contig6581:3034..33271691683768.8730998-CDS-L-elsbetiae_contig6581:3034..3327Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6581 3035..3327 +
1622816727.1397266-CDS-L-elsbetiae_contig6581:3461..50671622816727.1397266-CDS-L-elsbetiae_contig6581:3461..5067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6581 3462..5067 +
1691683768.8808873-CDS-L-elsbetiae_contig6581:3461..50671691683768.8808873-CDS-L-elsbetiae_contig6581:3461..5067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6581 3462..5067 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6581.15286.1

>prot_L-elsbetiae_contig6581.15286.1 ID=prot_L-elsbetiae_contig6581.15286.1|Name=mRNA_L-elsbetiae_contig6581.15286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=633bp
MFEWFVMEFVGLGDLVSDLTLVATTPSSDDVDDGSHPVTLWLLWGGTLIS
CIPLVALLIGICTGLVVVVGATLGAATKSAEGTRVLKSNFDQTRILLRYA
LSDSKTITRFVVFFAEGVPRKWDNAATLVAGFCLYVPLFPVAYPLVQALK
FWVDFVTRQNGVRAVDGPSREPAEAEEEEDAEEEEVPGLLWCLPLVFIQN
IGTFMTLAHSINVAVSLRDEILSEAIAAPVASIVFGIYFLWVSFLAPKKG
ESRESIMEQSFEQRMRNQAFADEEIIGVVRSRKFWLSFPAAVAGLAVLAL
PFVGLYFSQTASYHTLGVILASVGFALLGLLCWLALKGSFKTIGARLAFL
LSVPALISVGVGLVFHITRGYSDRNGNLFAGGLLVLLFSVPYGVREYFFS
STAALQAKEEEEQARWREFVEKLAADQEEPRQAERHERRQAAEKDEPQAR
ENQARRGKQEAEHAKRMEMTVKAMEEAMNPMNLTPGLVGDDEASKIDNEA
STKQAVEASKAYAKVWADICKQYTEGVGNQASRSAGGEPSTAFVEASTAS
VSRASMAASETCAESVRDQAPENAIEASMAAMAAMMEASKHCGETIGDQA
PEKAMESFMAAMAVMTEASTKYAENGKETRDG*
back to top

mRNA from alignment at L-elsbetiae_contig6581:2708..5308+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6581.15286.1 ID=mRNA_L-elsbetiae_contig6581.15286.1|Name=mRNA_L-elsbetiae_contig6581.15286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2601bp|location=Sequence derived from alignment at L-elsbetiae_contig6581:2708..5308+ (Laminarionema elsbetiae ELsaHSoW15)
TGCGGTTTGTGCTCAAGAACAGCGGGTCCCAGCGCCACCACATATCTATT
GTTCCTGTACCTGCAAATCGAGCGTGCCTAGAGGTGAGGGAGTGCGGAGA
GATTCTTGGACCAAACTTGTGTGTTGATGCACTTTCCAGAAGCCTATCTC
GTCGGCAGGCTTTTGTCGTGTGCACTTGGCGCCCAGCTGACGAAGTCGCG
AGGCGAGCACACTTCCTCTTCAGAGATGTTTTACGCGTGGCCTGGTAAGC
TGGTTTAAGCCATCTCACCTTTTTTACTTGTTTTCCGTCGACGATGTTTT
CAGGTGTGAAATATTCTAATCCTGAATATGTTCGAATGGTTCGTCATGGA
GTTCGTCGGGCTCGGTGATCTAGTGTCCGATCTGACGCTAGTGGCGACAA
CCCCGAGCAGCGATGACGTCGACGACGGCTCACATCCAGTCACGCTGTGG
CTATTATGGGGGGGCACCTTAATCAGCTGCATTCCGCTGGTTGCGCTGTT
GATTGGTATTTGCACAGGGCTCGTCGTAGTGGTTGGTGCAACCCTGGGGG
CTGCTACCAAGTCGGCTGAAGGCACGAGGGTGCTCAAGTCCAACTTTGAT
CAAACGAGGATCTTACTGAGGTGAACGGCAAGACGTAGGCCAGGCTATAC
TGCGGTGGATGACCTGCGGTATCCCCTACATCAAACTCCATATTTTCACA
TTTATTTACGCCTACCTGTCATCGTCCGTTATCCACCTGGATGTTGGCCC
CCAGGTACGCGCTTTCGGACAGCAAAACCATTACTCGTTTTGTGGTGTTC
TTCGCCGAGGGCGTTCCGCGTAAATGGGACAACGCGGCGACTCTGGTGGC
GGGCTTTTGCTTGTACGTGCCACTGTTTCCTGTCGCCTATCCTCTAGTAC
AGGCTTTAAAGTTTTGGGTTGACTTCGTCACGCGTCAAAACGGCGTGAGG
GCTGTGGACGGACCTAGTCGTGAACCCGCAGAAGCGGAGGAGGAAGAAGA
CGCGGAGGAGGAGGAAGTTCCGGGGCTACTGTGGTGCCTCCCGCTTGTCT
TTATACAAAATATCGGGACCTTCATGACACTGGCCCATTCAATCAACGTC
GCGGTTTCGCTTAGGGACGAGATTTTGTCAGAGGCCATCGCCGCGCCGGT
CGCGAGCATCGTTTTCGGGATATACTTCCTCTGGGTCAGCTTTCTGGCGC
CCAAGAAAGGGGAAAGCAGGGAAAGCATCATGGAGCAAAGCTTCGAGCAG
CGCATGCGGAACCAGGCCTTCGCCGATGAGGAGATAATCGGAGTTGTTCG
GTCGCGAAAGTTTTGGCTCTCTTTCCCCGCCGCCGTCGCAGGACTTGCCG
TTTTGGCCCTGCCATTCGTGGGTTTATACTTCTCGCAAACAGCCTCCTAC
CATACCCTAGGCGTAATTCTTGCTTCCGTCGGTTTCGCGCTGCTCGGTCT
TCTGTGCTGGCTGGCGCTGAAAGGTTCTTTCAAAACTATTGGCGCCCGCC
TCGCGTTTCTTTTATCGGTGCCAGCGCTGATTTCCGTAGGCGTGGGGCTG
GTTTTTCACATCACTCGCGGATATTCTGACCGAAACGGGAACCTGTTTGC
CGGTGGCCTTCTGGTCTTGTTGTTTTCAGTGCCGTATGGGGTTCGTGAAT
ATTTCTTTAGCAGTACAGCAGCGTTACAGGCAAAGGAGGAGGAAGAGCAA
GCCAGGTGGCGGGAATTCGTGGAGAAATTGGCAGCAGATCAAGAAGAGCC
ACGACAGGCAGAGCGGCACGAGCGACGACAGGCGGCAGAAAAAGACGAGC
CACAGGCACGGGAGAACCAGGCAAGGAGGGGAAAGCAAGAGGCTGAACAT
GCGAAGAGGATGGAGATGACGGTTAAGGCGATGGAAGAAGCGATGAATCC
GATGAATCTTACGCCAGGGTTGGTTGGTGATGATGAAGCTTCCAAGATCG
ACAATGAAGCTTCCACAAAACAAGCCGTGGAAGCTTCCAAAGCATACGCA
AAAGTTTGGGCAGACATTTGCAAACAATATACAGAAGGTGTAGGAAATCA
AGCTTCCAGGAGCGCAGGGGGGGAGCCTTCTACGGCTTTCGTCGAAGCTT
CAACGGCTTCGGTATCGAGGGCTTCAATGGCAGCTTCCGAAACTTGTGCA
GAAAGTGTGAGAGACCAGGCTCCAGAGAATGCCATCGAAGCTTCCATGGC
AGCCATGGCAGCCATGATGGAAGCTTCCAAACATTGTGGAGAAACCATAG
GAGACCAGGCTCCCGAAAAAGCCATGGAATCTTTCATGGCAGCCATGGCA
GTGATGACGGAAGCTTCAACAAAATATGCAGAAAATGGAAAGGAGACCCG
TGATGGCTGAGAAGGAGGGGCTCTGTAGGAGGGCCGGATCCGGCGATGGG
CTGGTTCAAGGGCCCACCAAATAACAGTTCTTGAACTAGATTAACGACTG
TCACCGTGTAGCTCTCTATTCTTCTCGTAATCGCCTCATGTAAGGGCGAA
GAGGATTCTCACTTTCGCTCGCTACGATCGTGGGTGGGCTCAGCTGGTGA
CGCCATGGTTAATTGAGCTAGTAATGTATTATTTATTGATCACACCAAAC
G
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6581:2708..5308+

>mRNA_L-elsbetiae_contig6581.15286.1 ID=mRNA_L-elsbetiae_contig6581.15286.1|Name=mRNA_L-elsbetiae_contig6581.15286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3798bp|location=Sequence derived from alignment at L-elsbetiae_contig6581:2708..5308+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCGAATGGTTCGTCATGGAGTTCGTCGGGCTCGGTGATCTAGTGTC
CGATCTGACGCTAGTGGCGACAACCCCGAGCAGCGATGACGTCGACGACG
GCTCACATCCAGTCACGCTGTGGCTATTATGGGGGGGCACCTTAATCAGC
TGCATTCCGCTGGTTGCGCTGTTGATTGGTATTTGCACAGGGCTCGTCGT
AGTGGTTGGTGCAACCCTGGGGGCTGCTACCAAGTCGGCTGAAGGCACGA
GGGTGCTCAAGTCCAACTTTGATCAAACGAGGATCTTACTGAGATGTTCG
AATGGTTCGTCATGGAGTTCGTCGGGCTCGGTGATCTAGTGTCCGATCTG
ACGCTAGTGGCGACAACCCCGAGCAGCGATGACGTCGACGACGGCTCACA
TCCAGTCACGCTGTGGCTATTATGGGGGGGCACCTTAATCAGCTGCATTC
CGCTGGTTGCGCTGTTGATTGGTATTTGCACAGGGCTCGTCGTAGTGGTT
GGTGCAACCCTGGGGGCTGCTACCAAGTCGGCTGAAGGCACGAGGGTGCT
CAAGTCCAACTTTGATCAAACGAGGATCTTACTGAGGTACGCGCTTTCGG
ACAGCAAAACCATTACTCGTTTTGTGGTGTTCTTCGCCGAGGGCGTTCCG
CGTAAATGGGACAACGCGGCGACTCTGGTGGCGGGCTTTTGCTTGTACGT
GCCACTGTTTCCTGTCGCCTATCCTCTAGTACAGGCTTTAAAGTTTTGGG
TTGACTTCGTCACGCGTCAAAACGGCGTGAGGGCTGTGGACGGACCTAGT
CGTGAACCCGCAGAAGCGGAGGAGGAAGAAGACGCGGAGGAGGAGGAAGT
TCCGGGGCTACTGTGGTGCCTCCCGCTTGTCTTTATACAAAATATCGGGA
CCTTCATGACACTGGCCCATTCAATCAACGTCGCGGTTTCGCTTAGGGAC
GAGATTTTGTCAGAGGCCATCGCCGCGCCGGTCGCGAGCATCGTTTTCGG
GATATACTTCCTCTGGGTCAGCTTTCTGGCGCCCAAGAAAGGGGAAAGCA
GGGAAAGCATCATGGAGCAAAGCTTCGAGCAGCGCATGCGGAACCAGGCC
TTCGCCGATGAGGAGATAATCGGAGTTGTTCGGTCGCGAAAGTTTTGGCT
CTCTTTCCCCGCCGCCGTCGCAGGACTTGCCGTTTTGGCCCTGCCATTCG
TGGGTTTATACTTCTCGCAAACAGCCTCCTACCATACCCTAGGCGTAATT
CTTGCTTCCGTCGGTTTCGCGCTGCTCGGTCTTCTGTGCTGGCTGGCGCT
GAAAGGTTCTTTCAAAACTATTGGCGCCCGCCTCGCGTTTCTTTTATCGG
TGCCAGCGCTGATTTCCGTAGGCGTGGGGCTGGTTTTTCACATCACTCGC
GGATATTCTGACCGAAACGGGAACCTGTTTGCCGGTGGCCTTCTGGTCTT
GTTGTTTTCAGTGCCGTATGGGGTTCGTGAATATTTCTTTAGCAGTACAG
CAGCGTTACAGGCAAAGGAGGAGGAAGAGCAAGCCAGGTGGCGGGAATTC
GTGGAGAAATTGGCAGCAGATCAAGAAGAGCCACGACAGGCAGAGCGGCA
CGAGCGACGACAGGCGGCAGAAAAAGACGAGCCACAGGCACGGGAGAACC
AGGCAAGGAGGGGAAAGCAAGAGGCTGAACATGCGAAGAGGATGGAGATG
ACGGTTAAGGCGATGGAAGAAGCGATGAATCCGATGAATCTTACGCCAGG
GTTGGTTGGTGATGATGAAGCTTCCAAGATCGACAATGAAGCTTCCACAA
AACAAGCCGTGGAAGCTTCCAAAGCATACGCAAAAGTTTGGGCAGACATT
TGCAAACAATATACAGAAGGTGTAGGAAATCAAGCTTCCAGGAGCGCAGG
GGGGGAGCCTTCTACGGCTTTCGTCGAAGCTTCAACGGCTTCGGTATCGA
GGGCTTCAATGGCAGCTTCCGAAACTTGTGCAGAAAGTGTGAGAGACCAG
GCTCCAGAGAATGCCATCGAAGCTTCCATGGCAGCCATGGCAGCCATGAT
GGAAGCTTCCAAACATTGTGGAGAAACCATAGGAGACCAGGCTCCCGAAA
AAGCCATGGAATCTTTCATGGCAGCCATGGCAGTGATGACGGAAGCTTCA
ACAAAATATGCAGAAAATGGAAAGGAGACCCGTGATGGCTGAGTACGCGC
TTTCGGACAGCAAAACCATTACTCGTTTTGTGGTGTTCTTCGCCGAGGGC
GTTCCGCGTAAATGGGACAACGCGGCGACTCTGGTGGCGGGCTTTTGCTT
GTACGTGCCACTGTTTCCTGTCGCCTATCCTCTAGTACAGGCTTTAAAGT
TTTGGGTTGACTTCGTCACGCGTCAAAACGGCGTGAGGGCTGTGGACGGA
CCTAGTCGTGAACCCGCAGAAGCGGAGGAGGAAGAAGACGCGGAGGAGGA
GGAAGTTCCGGGGCTACTGTGGTGCCTCCCGCTTGTCTTTATACAAAATA
TCGGGACCTTCATGACACTGGCCCATTCAATCAACGTCGCGGTTTCGCTT
AGGGACGAGATTTTGTCAGAGGCCATCGCCGCGCCGGTCGCGAGCATCGT
TTTCGGGATATACTTCCTCTGGGTCAGCTTTCTGGCGCCCAAGAAAGGGG
AAAGCAGGGAAAGCATCATGGAGCAAAGCTTCGAGCAGCGCATGCGGAAC
CAGGCCTTCGCCGATGAGGAGATAATCGGAGTTGTTCGGTCGCGAAAGTT
TTGGCTCTCTTTCCCCGCCGCCGTCGCAGGACTTGCCGTTTTGGCCCTGC
CATTCGTGGGTTTATACTTCTCGCAAACAGCCTCCTACCATACCCTAGGC
GTAATTCTTGCTTCCGTCGGTTTCGCGCTGCTCGGTCTTCTGTGCTGGCT
GGCGCTGAAAGGTTCTTTCAAAACTATTGGCGCCCGCCTCGCGTTTCTTT
TATCGGTGCCAGCGCTGATTTCCGTAGGCGTGGGGCTGGTTTTTCACATC
ACTCGCGGATATTCTGACCGAAACGGGAACCTGTTTGCCGGTGGCCTTCT
GGTCTTGTTGTTTTCAGTGCCGTATGGGGTTCGTGAATATTTCTTTAGCA
GTACAGCAGCGTTACAGGCAAAGGAGGAGGAAGAGCAAGCCAGGTGGCGG
GAATTCGTGGAGAAATTGGCAGCAGATCAAGAAGAGCCACGACAGGCAGA
GCGGCACGAGCGACGACAGGCGGCAGAAAAAGACGAGCCACAGGCACGGG
AGAACCAGGCAAGGAGGGGAAAGCAAGAGGCTGAACATGCGAAGAGGATG
GAGATGACGGTTAAGGCGATGGAAGAAGCGATGAATCCGATGAATCTTAC
GCCAGGGTTGGTTGGTGATGATGAAGCTTCCAAGATCGACAATGAAGCTT
CCACAAAACAAGCCGTGGAAGCTTCCAAAGCATACGCAAAAGTTTGGGCA
GACATTTGCAAACAATATACAGAAGGTGTAGGAAATCAAGCTTCCAGGAG
CGCAGGGGGGGAGCCTTCTACGGCTTTCGTCGAAGCTTCAACGGCTTCGG
TATCGAGGGCTTCAATGGCAGCTTCCGAAACTTGTGCAGAAAGTGTGAGA
GACCAGGCTCCAGAGAATGCCATCGAAGCTTCCATGGCAGCCATGGCAGC
CATGATGGAAGCTTCCAAACATTGTGGAGAAACCATAGGAGACCAGGCTC
CCGAAAAAGCCATGGAATCTTTCATGGCAGCCATGGCAGTGATGACGGAA
GCTTCAACAAAATATGCAGAAAATGGAAAGGAGACCCGTGATGGCTGA
back to top