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Homology
BLAST of mRNA_L-elsbetiae_contig6565.15267.1 vs. uniprot
Match: A0A6H5JKE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKE3_9PHAE) HSP 1 Score: 211 bits (537), Expect = 1.880e-66 Identity = 109/161 (67.70%), Postives = 124/161 (77.02%), Query Frame = 1
Query: 10 GDQGLEFKVLKHRQTLGGGVGPGVAEIFEKVKLGDDATPAHVLDHLRKRAAGAGGGGDGVSAELEALMSEPVEVSVTKAVRKMDVSTGDNKSSLEVTEVSVSFPGMPGAYPRDWVTFCAEGSVESIEAFLGGAGKPLVRLLSLREALQVGYPQFVQMISTE 492
G GLEFK LK RQTLGGGVGPG AE F+K+KLGD ATP V++HLRK+A G G VS LEALMS P+EV+V K+VRK V+T + K+S EVTEVSVSFP MP YP++W TFC EG + SIEAFLG GKPLV LLSLR ALQVGYP FVQMIST+
Sbjct: 55 GGGGLEFKALKQRQTLGGGVGPGAAETFQKIKLGDGATPTEVIEHLRKQA---GKGEGAVSEGLEALMSTPLEVTVKKSVRKTTVTTREGKASFEVTEVSVSFPEMPETYPKNWTTFCVEGKMTSIEAFLGSKGKPLVALLSLRGALQVGYPHFVQMISTQ 212
BLAST of mRNA_L-elsbetiae_contig6565.15267.1 vs. uniprot
Match: D7FLJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ5_ECTSI) HSP 1 Score: 123 bits (308), Expect = 2.370e-32 Identity = 65/97 (67.01%), Postives = 74/97 (76.29%), Query Frame = 1
Query: 10 GDQGLEFKVLKHRQTLGGGVGPGVAEIFEKVKLGDDATPAHVLDHLRKRAAGAGGGGDGVSAELEALMSEPVEVSVTKAVRKMDVSTGDNKSSLEVT 300
G GLEFK LK RQTLGGGVGPG AE F+KV LGDDATPA V++HLRK A G G GVS ELEALMS P+EV+V K+VRK V+ G+ K+S EVT
Sbjct: 55 GGGGLEFKALKQRQTLGGGVGPGAAETFQKVMLGDDATPAEVIEHLRKEA---GEGEGGVSEELEALMSTPLEVAVKKSVRKTTVTAGERKASFEVT 148
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-17_000950.1 |
| Exons | 3 |
| Model size | 551 |
| Cds size | 285 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816724.87596-UTR-L-elsbetiae_contig6565:115..171 | 1622816724.87596-UTR-L-elsbetiae_contig6565:115..171 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6565 116..171 - |
| 1691683767.1715229-UTR-L-elsbetiae_contig6565:115..171 | 1691683767.1715229-UTR-L-elsbetiae_contig6565:115..171 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6565 116..171 - |
| 1622816724.9082382-UTR-L-elsbetiae_contig6565:1877..1988 | 1622816724.9082382-UTR-L-elsbetiae_contig6565:1877..1988 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6565 1878..1988 - |
| 1691683767.2032638-UTR-L-elsbetiae_contig6565:1877..1988 | 1691683767.2032638-UTR-L-elsbetiae_contig6565:1877..1988 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6565 1878..1988 - |
| 1622816724.9257994-UTR-L-elsbetiae_contig6565:4065..4164 | 1622816724.9257994-UTR-L-elsbetiae_contig6565:4065..4164 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6565 4066..4164 - |
| 1691683767.2172112-UTR-L-elsbetiae_contig6565:4065..4164 | 1691683767.2172112-UTR-L-elsbetiae_contig6565:4065..4164 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6565 4066..4164 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816724.8869407-CDS-L-elsbetiae_contig6565:171..365 | 1622816724.8869407-CDS-L-elsbetiae_contig6565:171..365 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6565 172..365 - |
| 1691683767.181671-CDS-L-elsbetiae_contig6565:171..365 | 1691683767.181671-CDS-L-elsbetiae_contig6565:171..365 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6565 172..365 - |
| 1622816724.8973665-CDS-L-elsbetiae_contig6565:1786..1877 | 1622816724.8973665-CDS-L-elsbetiae_contig6565:1786..1877 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6565 1787..1877 - |
| 1691683767.1924455-CDS-L-elsbetiae_contig6565:1786..1877 | 1691683767.1924455-CDS-L-elsbetiae_contig6565:1786..1877 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6565 1787..1877 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6565.15267.1 >prot_L-elsbetiae_contig6565.15267.1 ID=prot_L-elsbetiae_contig6565.15267.1|Name=mRNA_L-elsbetiae_contig6565.15267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
MSEPVEVSVTKAVRKMDVSTGDNKSSLEVTEVSVSFPGMPGAYPRDWVTF
CAEGSVESIEAFLGGAGKPLVRLLSLREALQVGYPQFVQMISTE* back to topmRNA from alignment at L-elsbetiae_contig6565:116..4164- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig6565.15267.1 ID=mRNA_L-elsbetiae_contig6565.15267.1|Name=mRNA_L-elsbetiae_contig6565.15267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4049bp|location=Sequence derived from alignment at L-elsbetiae_contig6565:116..4164- (Laminarionema elsbetiae ELsaHSoW15)
CAAAATCAGGGGGACCAAGGACTGGAGTTCAAAGTCCTGAAGCACCGCCA
GACGCTGGGCGGCGGGGTCGGCCCCGGAGTGGCGGAGATCTTCGAAAAGG
TATGTATGTACTGTATCCTACACTAATTTAGGTCTTCGAAACGCCACAGC
AGTATATAGCCCCCTTTTTAACCACGACCCGAACTCTGAGTAGGATGGCA
CAGCAGCGGCACGGGTCTCTCCGAAGAAACAGGCTATATATTGGTCTATA
TGTATACTTCATATACTTCGTATATAGCCTCATAACCAAAATGAGGCGAG
CAGCGCCTTCGTAGAGAGATACCATAATGATGCGAAGGTTCGCACCCCCG
TTTTAGCATTTTTCTAAAGCGTATTTCGTCTCGTCGGGGGCTTTCCAGAG
AGGTAACAGTTAGTGTTCGCACCCTCCTGGTTGTGGAGAAATACACTATA
TAGAAAAACGCCAACACGGGGGTGCGAAACTTCGCATAATTACGGTATTC
CACGAAAGCAGATGTAGGTGACACAAGATACCACCCCCCCCGCGCGCGCG
CCCTCAACAGATTTTCTAAGCTCTATTACTCCGTCACGAAGAGGGTGCCG
GCACCAAACGACACATTGTCGGAGAGCCCTCGACTAGATGTTTCCAACGC
CGCCCCTTTTCGGCACTGTCACTCTCCTTGCTGGAGAGGAATCGAGCTTT
GAAAGTCTGTCCAAGGGGGTCCAGGGGGGGTTGGTATATTGTGTTACCTA
TGCATGTAGGCAGGCTCGGAACCAAATTAGGCGAGCAGCGCCTTGTATCT
AGAGGAATGTTAAATGTTTCGAAAACACGTGTAGGGGCATGGGTCCAGCC
TCGGCAGGCGATGGGGGGGTGGGCGCGATACGAAGAAAAGCACGTCCCGT
GCAAGTTGACAGCGGTCGGTAGGCGTCAGTGTCGTGCGCAGAAGAAGCAC
CTTCGGCAGGCAGCCTAGACAAGACTTTTTCAGCTTTGGACCTCTTACCA
TTGCGCATTAGAAGGTTCATCATTTTAGTTACACAAGTGGATCACTTTTA
ATTCTCAAAGAATACTCGTTATTATTATCTTTATGTTCTTTGAATAACAT
CCTTCATCTATTTTTTTTGTACCATATTTAGAACGAGAAGTTTTATGACC
CGGTAGACCTTCTAAATCAAGCTTATTACGTATTAAACGGAAAATAATCA
CCTACGGCAGGCAGCCTCAGCCAGCCCTCGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGTGCTCTGCATGTTCGGGACGCTCGTATTACAGTAGG
TGACGTAAGATAAGACACCCCCTGGACCGAGATTGAAAGCTTGGTTACTC
CGCAACGAATACGATTCTAACCACAAACGCCACATTTTCGGACAGATCTC
GACGAGATCTTTCTAACGCCGCCCTTTTCGGGACTGACGCTCTGCTTGCT
GTGGAGTACTTGAGCTTTGAAAATCGGTCCAGGAGGTGTCTTGTCGTATG
TCACCTACGGTAAATGGGTTTGTCCTTTCAGGGGTGTGGTCCATGCGGTG
TTCGGAGAGACGTACTGCTGTTACTACTGCTAAAAGATAGTCCGATGTTC
GACTACTGTAGGAAGTCAATGACCCATTGAGTTTGATGCTTTGTGTAGCC
CAGAGCCAGGCGGGTCTCTTGCCCTGCCAGCCATGGTCCCAAGCAACCGC
GTCAAACTCGTCGACGGCGCCTGAGCCTCTGCCTCTGCCCCTGCGCCTCG
CCATATGTAACCCCGACCTAGAAGTCCAAAAAGGCAGGGGGGAGGCGACG
CGGTGTCCATCCCCATTCGCACCCCCCCCCTGTAGCTGTAGCCGCCGACC
CAGAGGGCGAGCAGGCCTGACCCTGCCCCATTGCCCCCTCCCCGGGCCCG
TAACCCCCGCCCGTCAACAGCAGGCCTACGGAGGAGTTTCGTCTTCAGCT
ACTTCTATATAACATATGAGATAAAAGTATGAGAACCGGTAAAAGGGGGG
TCGGTGGTTGGGGTTAGGGTTAGGCGCTGAGCTACCGACTCCGCCTCTGC
CTCCGGCTCCACCCCCAGCTCTTTCCACCCACCTCAGAGCTCGAGCTCGA
GCTCGCATAGGTACCCGCGCCTTCACTCCTCCGCTCTGATTACTGTTGCT
GTCGTTGCGCCTGCGCCTGCGCACAGGTCAAGCTCGGTGACGACGCCACT
CCGGCGCACGTCCTCGACCACCTGCGCAAGAGGGCAGCGGGGGCTGGTGG
GGGCGGGGACGGGGTCTCGGCGGAGCTGGAGGCCCTGATGAGCGAGCCGG
TTGAGGTCAGCGTCACGAAGGCGGTGCGGAAGATGGATGTCTCGACAGGG
GACAACAAGTCGAGCTTGGAGGTCACAGGTGCGGAGGGGGTGCTGCGCGT
TTCTGTTTGTGTGTGTGTGGGGTCTTGTAACCGAGGCGGCTTGGGGGTCA
CGCAGGAGCGACTTGTTTAGGGGTCGGGCTTTTTGGGCCCTGACCCTAAC
CCCAACCACCGACCCCCCTTTCCCGGTTTCCATACTCTATCTCATATGTT
AGCTGACGACGAAAACCCTGCGTAGACTACTGAGAGAACATGGCACACCG
CAAGTGCTTTCTTTTGTCCCGTGTCGCATGAGAGAGCTGAGGTCATACCG
TAATAAATATGTGTAACACGTATCCCTTGAGAACGCCCTGGGGTGTATGT
AAACATTCTTCAAAGAAGCTGATTTTCTCTCGACAACCGAGAGGGTGCGA
TCGACGAGAATGTTAATTTTGGAAAGATCTCGACGAGATCCTTCCAAGGG
CACATCGCTCCTCGACGATAGCAACCCCACCCACCTGCGGAGAGGATCGG
CTCTGAAATTTGTTTACACCCCGGGGCGTTCTCAAGGGATGCGTATTACG
GTACACCTCTCGGATCTCCCCCCGAGTACGCAACGGTTTTTCGGGGGTGG
CAGAAGGAGGAGTAAGATCAGTGGTCTGCTATAGCACATCAGTGCCTAAA
GCGCGATGATGGCTGAAGGACCGAGGGATTTTGCACACCGCCTCCTCCCC
CTCCCCCCTAGTTGCACGTCTCCCCCCTGAGCATACACTCCCGTTGGGGG
CAAGAGAGCGGTGATCGCTACATACCTTGCGGACAAGACTTTGTGGACTC
TTCTGGTGTGCCCCCCCCTGTAGCCTTCACGGATTTTACTGGAAGAAATC
TAATAGGATATAAAGTATGGAAACGGCTCATGGGGGATCGGTTTGGGGTT
AGGGTTACGGAACCCCTGTCCGTGAATGCCACCTGACTGGTCGTTAGAGT
GATGTCATCAAATGACCCAACCAGAATCTACGTCATCCTGGCCGGGGTAT
CACAGATTAGAGTCAGCACCGTTCCTTGGATTCCACGGCTTCAGCACCCG
CTCTATCCTATGACTCGCCCCACGTTACTTCTCGTTTGCCCGTTCCGTCC
CTCCTCTCGCCGTCGAGAGTTGAGGCCCGGTGTGTACTCCACACCGCACA
CACATGAGAACCAAGCCTGTAGAATCTGAGAGAGACTGACCCCTCTTTTA
TCTCTATTATTTCCCATATAAAGAGGAATTATTGGCGGAGACGGTCCGCC
TCCCCCCCCCCCACTGCGCTTCACCTGAATCCGCAGGGGTCGAGAGGGGA
AATGAAGGCCACGTCTCGCGAGGTCGCGCCGCTTTGCTTTCCCGTACACC
AGCCTACCCATTCCGACGCTCAGAGCCCCACCCACTCACCCTTGCTCGTT
TTTTCCACGCACCTGTAAACCGCTAATGACAACGCGTGTGCCTCCGCAGA
GGTTTCCGTGAGCTTCCCCGGCATGCCGGGGGCCTACCCGAGGGACTGGG
TCACGTTTTGCGCGGAGGGGAGCGTGGAGAGCATCGAGGCGTTTCTCGGC
GGGGCGGGGAAGCCCCTGGTGCGGCTGCTGTCCCTCAGGGAGGCGTTGCA
AGTGGGGTACCCGCAGTTCGTGCAGATGATCTCGACGGAATGAGCCCCTA
TGTGGCGAATAACGCTTTGTTTTGAAGCGCAGGGGGGGATGGCGTGGTG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig6565:116..4164- >mRNA_L-elsbetiae_contig6565.15267.1 ID=mRNA_L-elsbetiae_contig6565.15267.1|Name=mRNA_L-elsbetiae_contig6565.15267.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig6565:116..4164- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCGAGCCGGTTGAGGTCAGCGTCACGAAGGCGGTGCGGAAGATGGA
TGTCTCGACAGGGGACAACAAGTCGAGCTTGGAGGTCACAGATGAGCGAG
CCGGTTGAGGTCAGCGTCACGAAGGCGGTGCGGAAGATGGATGTCTCGAC
AGGGGACAACAAGTCGAGCTTGGAGGTCACAGAGGTTTCCGTGAGCTTCC
CCGGCATGCCGGGGGCCTACCCGAGGGACTGGGTCACGTTTTGCGCGGAG
GGGAGCGTGGAGAGCATCGAGGCGTTTCTCGGCGGGGCGGGGAAGCCCCT
GGTGCGGCTGCTGTCCCTCAGGGAGGCGTTGCAAGTGGGGTACCCGCAGT
TCGTGCAGATGATCTCGACGGAATGAAGGTTTCCGTGAGCTTCCCCGGCA
TGCCGGGGGCCTACCCGAGGGACTGGGTCACGTTTTGCGCGGAGGGGAGC
GTGGAGAGCATCGAGGCGTTTCTCGGCGGGGCGGGGAAGCCCCTGGTGCG
GCTGCTGTCCCTCAGGGAGGCGTTGCAAGTGGGGTACCCGCAGTTCGTGC
AGATGATCTCGACGGAATGA back to top
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