mRNA_L-elsbetiae_contig6522.15213.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6522.15213.1
Unique NamemRNA_L-elsbetiae_contig6522.15213.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6522.15213.1 vs. uniprot
Match: A0A6H5L568_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L568_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 5.390e-18
Identity = 47/74 (63.51%), Postives = 51/74 (68.92%), Query Frame = -2 
Query:    2 DEKATAAEMREDFADGVETGSARLRMTCGDPVFFGQLAELMQGLQRRSGGRKFLTHEEEMALGVKVQRYRRLIE 223
            D K      R+    G    SARLRMTCGDPVFF  LAELMQG+ R++GGRKFL HEEEM LG  VQRYR LIE
Sbjct:  367 DIKELTRTARKGDLTGGAMDSARLRMTCGDPVFFAHLAELMQGVHRQAGGRKFLNHEEEMELGETVQRYRALIE 440
[Close]
BLAST of mRNA_L-elsbetiae_contig6522.15213.1 vs. uniprot
Match: D7G7N1_ECTSI (RNA polymerase sigma factor, cyanobacterial RpoD-like family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N1_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 7.170e-18
Identity = 44/54 (81.48%), Postives = 46/54 (85.19%), Query Frame = -2 
Query:    2 SARLRMTCGDPVFFGQLAELMQGLQRRSGGRKFLTHEEEMALGVKVQRYRRLIE 163
            SARLRMTCGDPVFF  LAELMQG+ R+SGGRKFL HEEEM LG  VQRYR LIE
Sbjct:  387 SARLRMTCGDPVFFAHLAELMQGVHRQSGGRKFLNHEEEMELGETVQRYRGLIE 440
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6522.15213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L568_9PHAE5.390e-1863.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7N1_ECTSI7.170e-1881.48RNA polymerase sigma factor, cyanobacterial RpoD-l... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6522contigL-elsbetiae_contig6522:1223..1647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size425
Cds size420
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.2433107-UTR-L-elsbetiae_contig6522:1222..12271622816720.2433107-UTR-L-elsbetiae_contig6522:1222..1227Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6522 1223..1227 +
1691683763.963019-UTR-L-elsbetiae_contig6522:1222..12271691683763.963019-UTR-L-elsbetiae_contig6522:1222..1227Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6522 1223..1227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816720.2564075-CDS-L-elsbetiae_contig6522:1227..16471622816720.2564075-CDS-L-elsbetiae_contig6522:1227..1647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6522 1228..1647 +
1691683763.9831145-CDS-L-elsbetiae_contig6522:1227..16471691683763.9831145-CDS-L-elsbetiae_contig6522:1227..1647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6522 1228..1647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6522.15213.1prot_L-elsbetiae_contig6522.15213.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6522 1228..1647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6522.15213.1

>prot_L-elsbetiae_contig6522.15213.1 ID=prot_L-elsbetiae_contig6522.15213.1|Name=mRNA_L-elsbetiae_contig6522.15213.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
MSRRYRCTFTPSAISSSWVRNFLPPDRRCRPCMSSASCPKNTGSPHVIRR
RALPVSTPSAKSSLISAAVAFSSTGPPPQPPPPSSSSSSSPRSRDGGCCG
AAGATPPAPPLPTAAAVPPRAAEAVPQPPVPASSSLTMIP
back to top

mRNA from alignment at L-elsbetiae_contig6522:1223..1647+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6522.15213.1 ID=mRNA_L-elsbetiae_contig6522.15213.1|Name=mRNA_L-elsbetiae_contig6522.15213.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=425bp|location=Sequence derived from alignment at L-elsbetiae_contig6522:1223..1647+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCGATGAGCCGCCGATACCGCTGCACCTTCACCCCGAGCGCCATCTCT
TCCTCGTGGGTCAGGAACTTCCTTCCGCCCGACCGGCGCTGCAGGCCCTG
CATGAGCTCCGCCAGCTGCCCGAAGAACACCGGGTCGCCGCACGTCATTC
GGAGGCGCGCGCTGCCCGTCTCCACGCCATCCGCGAAGTCCTCCCTCATC
TCGGCGGCCGTGGCCTTCTCATCCACGGGACCCCCGCCCCAGCCCCCGCC
GCCATCGTCATCATCGTCGTCGTCACCTCGTTCTCGCGACGGCGGCTGTT
GCGGGGCCGCCGGTGCTACTCCTCCCGCGCCGCCTCTCCCGACCGCTGCC
GCAGTCCCCCCCCGCGCCGCCGAGGCAGTGCCGCAGCCCCCCGTGCCGGC
CTCTAGCTCCCTCACCATGATCCCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6522:1223..1647+

>mRNA_L-elsbetiae_contig6522.15213.1 ID=mRNA_L-elsbetiae_contig6522.15213.1|Name=mRNA_L-elsbetiae_contig6522.15213.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig6522:1223..1647+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCCGCCGATACCGCTGCACCTTCACCCCGAGCGCCATCTCTTCCTC
GTGGGTCAGGAACTTCCTTCCGCCCGACCGGCGCTGCAGGCCCTGCATGA
GCTCCGCCAGCTGCCCGAAGAACACCGGGTCGCCGCACGTCATTCGGAGG
CGCGCGCTGCCCGTCTCCACGCCATCCGCGAAGTCCTCCCTCATCTCGGC
GGCCGTGGCCTTCTCATCCACGGGACCCCCGCCCCAGCCCCCGCCGCCAT
CGTCATCATCGTCGTCGTCACCTCGTTCTCGCGACGGCGGCTGTTGCGGG
GCCGCCGGTGCTACTCCTCCCGCGCCGCCTCTCCCGACCGCTGCCGCAGT
CCCCCCCCGCGCCGCCGAGGCAGTGCCGCAGCCCCCCGTGCCGGCCTCTA
GCTCCCTCACCATGATCCCGATGAGCCGCCGATACCGCTGCACCTTCACC
CCGAGCGCCATCTCTTCCTCGTGGGTCAGGAACTTCCTTCCGCCCGACCG
GCGCTGCAGGCCCTGCATGAGCTCCGCCAGCTGCCCGAAGAACACCGGGT
CGCCGCACGTCATTCGGAGGCGCGCGCTGCCCGTCTCCACGCCATCCGCG
AAGTCCTCCCTCATCTCGGCGGCCGTGGCCTTCTCATCCACGGGACCCCC
GCCCCAGCCCCCGCCGCCATCGTCATCATCGTCGTCGTCACCTCGTTCTC
GCGACGGCGGCTGTTGCGGGGCCGCCGGTGCTACTCCTCCCGCGCCGCCT
CTCCCGACCGCTGCCGCAGTCCCCCCCCGCGCCGCCGAGGCAGTGCCGCA
GCCCCCCGTGCCGGCCTCTAGCTCCCTCACCATGATCCCG
back to top