mRNA_L-elsbetiae_contig6445.15118.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: D7FKU4_ECTSI (Chlorophyll binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU4_ECTSI) HSP 1 Score: 364 bits (934), Expect = 1.180e-124 Identity = 180/211 (85.31%), Postives = 195/211 (92.42%), Query Frame = 1 Query: 37 MKCIAMLLAACA-GAQAFVAPSAFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLLNFETPFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGE 666 MKC +LAACA GA AFVAPSAFNGAA+ TRA++SSAMKM+FENELGAQ PLGFWDPLYWLE+ADQERFDRLRYVEIKHGRICMLAILGH+TQENVRLPG LNFETPFAD+PNGL AISKMG FGVAQIV FIGFLELFVMKQKEGSFPGDMSRINPFEKQWESF EETKL+KRAIELNNGRAAQMGIF +V+HEI+ +PYIIN I+G+ Sbjct: 1 MKCTIAMLAACAAGANAFVAPSAFNGAAVATRAQSSSAMKMSFENELGAQPPLGFWDPLYWLEDADQERFDRLRYVEIKHGRICMLAILGHITQENVRLPGNLNFETPFADMPNGLTAISKMGPFGVAQIVAFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFDEETKLRKRAIELNNGRAAQMGIFALVIHEILDGEPYIINKIVGD 211
BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: Q9FEP5_SACLA (Light harvesting protein lhcf3 (Fragment) n=1 Tax=Saccharina latissima TaxID=309358 RepID=Q9FEP5_SACLA) HSP 1 Score: 336 bits (861), Expect = 6.870e-114 Identity = 159/196 (81.12%), Postives = 183/196 (93.37%), Query Frame = 1 Query: 100 AFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLLNF--ETPFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGE-KWLA 678 AFNGA++ TRA+TSSAMKM+FENELG QAPLG+WDPLYWLENADQERFDRLRYVEIKHGRICMLAILGH+ QENVRLPG+L+F + FAD+PNGLGA+SKMG GVAQIV+FIGFLE+FVMKQKEGSFPGDMSR+NPFEKQW+SF EETKL+KRAIELNNGRAAQMGIFG++VHE+++NQPY+IN++LGE W A Sbjct: 1 AFNGASMATRAKTSSAMKMSFENELGVQAPLGYWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHIVQENVRLPGMLSFSNDQSFADMPNGLGALSKMGPIGVAQIVIFIGFLEVFVMKQKEGSFPGDMSRVNPFEKQWDSFDEETKLRKRAIELNNGRAAQMGIFGLIVHEVINNQPYVINNLLGELSWAA 196
BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE) HSP 1 Score: 273 bits (697), Expect = 1.140e-88 Identity = 140/215 (65.12%), Postives = 169/215 (78.60%), Query Frame = 1 Query: 37 MKCIAMLLAACAGAQAFVAPSAFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLLNFET--PFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGEKW 672 MK M LA A A AFVAPSAFNGAA+ T A++SSAMKM+FE+E+GAQ PLGFWDPL L +ADQERF+RLRYVE+KHGRI MLAI GHLTQ+NVRLPG+L+ FAD+PNG+ A+SK+ G+AQI F+GFLEL VMK EGSFPGD + NPF W++ SEET+ KRAIELNNGRAAQMGI ++VHE ++N+PYIIND+LG + Sbjct: 1 MKSACMALACAASANAFVAPSAFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASY 215
BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY) HSP 1 Score: 266 bits (679), Expect = 4.830e-86 Identity = 138/206 (66.99%), Postives = 162/206 (78.64%), Query Frame = 1 Query: 64 ACAGAQAFVAPSAFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLLNFET--PFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGD-MSRINPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGEKW 672 ACA A PSAFNGAAL+T A++SSAMKM+FE+E+GAQAPLGFWDPL L +ADQERF+RLRYVE+KHGRI MLAI GHLTQ+N RLPG+L+ FAD+PNG+ A+SK+ G+AQI FIGFLEL VMK EGSFPGD + NPF W+S S ET+ KRAIELNNGRAAQMGI GM+VHE +SNQPYI ND+LG + Sbjct: 3 ACAAAPGLRGPSAFNGAALSTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASY 208
BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY) HSP 1 Score: 266 bits (679), Expect = 5.910e-86 Identity = 135/211 (63.98%), Postives = 165/211 (78.20%), Query Frame = 1 Query: 49 AMLLAACAGAQAFVAPSAFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLLNFET--PFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGEKW 672 A++ ACA A F PSAFNGAALTT A+ SAMKM+FE+E+GAQAPLGFWDPL L +ADQERF+RLRYVE+KHGRI MLAI GHLTQ+N RLPG+L+ FAD+PNG+ A+SK+ G+AQI FIGFLEL VMK EGSFPGD + NPF W++ SEET+ KRAIELNNGRAAQMGI ++VHE ++N+PY+IND++G + Sbjct: 4 AVMAVACAAAPGFRGPSAFNGAALTTSAKACSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASY 214
BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: D7FIR0_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR0_ECTSI) HSP 1 Score: 265 bits (677), Expect = 1.400e-85 Identity = 138/207 (66.67%), Postives = 166/207 (80.19%), Query Frame = 1 Query: 58 LAACAG-AQAFVAPSAFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWL-ENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLL--NFETPFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGDMSRINPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGE 666 +AACA A AFVAPSAF GA+LT SS+MKM+FE E+GAQAP+G+WDPL L ++ QERFDRLRYVEIKHGRI MLAILGH+T +N R PG+L + + FAD PNGL AISK+ +G+ QI +FIGFLE VM QKEGSFPGDMS INPFEK+WES++EE + KRAIELNNGRAAQMGI G++VHE ++N PY+IN+ILG Sbjct: 11 VAACAATASAFVAPSAFKGASLTAAKPASSSMKMSFETEIGAQAPIGYWDPLGLLTKDPSQERFDRLRYVEIKHGRIAMLAILGHITAQNFRFPGMLAPSADLSFADCPNGLAAISKIPLYGLIQIFLFIGFLETKVMLQKEGSFPGDMSLINPFEKEWESWTEEEQATKRAIELNNGRAAQMGILGLMVHEQINNTPYVINEILGS 217
BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE) HSP 1 Score: 256 bits (654), Expect = 4.140e-82 Identity = 127/195 (65.13%), Postives = 158/195 (81.03%), Query Frame = 1 Query: 97 SAFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLLN--FETPFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGEKW 672 SAFNGAA+ T A++SSAMKM+FE+E+GAQ PLGFWDPL L +ADQERF+RLRYVE+KHGRI MLAI GHLTQ+NVRLPG+L+ + FAD+PNG+ A+SK+ G+AQI F+GFLEL VMK EGSFPGD + NPF W++ SEET+ KRAIELNNGRAAQMGI ++VHE ++N+PY+IND+LG + Sbjct: 24 SAFNGAAVATSAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGY 218
BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY) HSP 1 Score: 253 bits (647), Expect = 4.030e-81 Identity = 130/209 (62.20%), Postives = 162/209 (77.51%), Query Frame = 1 Query: 55 LLAACAGAQAFVAPSAFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLLNFET--PFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGEKW 672 ++A + A PSAFNGAALTT A++SSAMKM+FE+E+GAQAPLGFWDPL LE+ADQ+ F+RLRYVE+K GRI MLAI GHLTQ+N RLPG+L+ FAD+PNG+ A+SK+ G+AQI FIGFLEL VMK EGSFPGD + NPF W++ S ET+ KRAIELNNGRAAQMGI ++VHE ++N+PY+IND+LG + Sbjct: 5 IMAVASAAPGLRGPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASY 213
BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY) HSP 1 Score: 251 bits (640), Expect = 4.050e-80 Identity = 128/206 (62.14%), Postives = 157/206 (76.21%), Query Frame = 1 Query: 64 ACAGAQAFVAPSAFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLLNFET--PFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGEKW 672 ACA A FNGAAL T A++SSAMKM+FE+E+GAQ P+GFWDPL + +ADQERFDRLRYVEIKHGRI MLA++GH+TQ+N RLPG+L+F+ FAD PNG+ A SK+ G QI++ IG ELFV+KQ EGSFPGD + N F+ W++ SEET+ KRAIELNNGRAAQMGI M+VHE +SNQPYIIND+ G + Sbjct: 4 ACAAAPGLRGAEPFNGAALATSAKSSSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAY 209
BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI) HSP 1 Score: 253 bits (647), Expect = 6.530e-79 Identity = 127/194 (65.46%), Postives = 156/194 (80.41%), Query Frame = 1 Query: 100 AFNGAALTTRARTSSAMKMNFENELGAQAPLGFWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHLTQENVRLPGLLNFET--PFADVPNGLGAISKMGGFGVAQIVVFIGFLELFVMKQKEGSFPGDMSRI-NPFEKQWESFSEETKLQKRAIELNNGRAAQMGIFGMVVHEIMSNQPYIINDILGEKW 672 AFNGAA+ T A++SSAMKM+FE+E+GAQ PLGFWDPL LE+ADQERF+RLRYVE+KHGRI MLAI GHLTQ+N RLPG+L+ FAD+PNG+ A+SK+ G+AQI FIGFLEL VMK EGSFPGD + NPF W++ SEET+ KRAIELNNGRAAQMGI ++VHE ++N+PY+IND+LG + Sbjct: 181 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGY 374 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6445.15118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6445.15118.1 >prot_L-elsbetiae_contig6445.15118.1 ID=prot_L-elsbetiae_contig6445.15118.1|Name=mRNA_L-elsbetiae_contig6445.15118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=307bp LSPQAFLTFTLNMKCIAMLLAACAGAQAFVAPSAFNGAALTTRARTSSAMback to top mRNA from alignment at L-elsbetiae_contig6445:3545..6730+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6445.15118.1 ID=mRNA_L-elsbetiae_contig6445.15118.1|Name=mRNA_L-elsbetiae_contig6445.15118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3186bp|location=Sequence derived from alignment at L-elsbetiae_contig6445:3545..6730+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6445:3545..6730+ >mRNA_L-elsbetiae_contig6445.15118.1 ID=mRNA_L-elsbetiae_contig6445.15118.1|Name=mRNA_L-elsbetiae_contig6445.15118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1842bp|location=Sequence derived from alignment at L-elsbetiae_contig6445:3545..6730+ (Laminarionema elsbetiae ELsaHSoW15)back to top |