mRNA_L-elsbetiae_contig6411.15090.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6411.15090.1
Unique NamemRNA_L-elsbetiae_contig6411.15090.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6411.15090.1 vs. uniprot
Match: D7G0B6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B6_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.520e-7
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 2 
Query:  104 MSFLDGLCDLPE-DIEISWRSFLHLEDVCSLTTLGAFASGLLALLTLAAVL 253
            M FLDGLCD P+ + + SW  F  L++VCSLTTLGA  +GL+ALL+  A+L
Sbjct:    1 MGFLDGLCDSPDGEAKFSWHDFWRLDNVCSLTTLGAVVAGLVALLSFVAML 51
[Close]
BLAST of mRNA_L-elsbetiae_contig6411.15090.1 vs. uniprot
Match: A0A6H5JJ25_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ25_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 2.080e-7
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 2 
Query:  104 MSFLDGLCDLPE-DIEISWRSFLHLEDVCSLTTLGAFASGLLALLTLAAVL 253
            M FLDGLCD P+ + E SW  F  L++VCSLTTLGA  +GL+AL++  A+L
Sbjct:    1 MGFLDGLCDSPDGEAEFSWHDFWLLDNVCSLTTLGAVVAGLVALMSFVAML 51
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6411.15090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0B6_ECTSI1.520e-756.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ25_9PHAE2.080e-756.86ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6411contigL-elsbetiae_contig6411:9580..10487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size255
Cds size150
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6411.15090.1prot_L-elsbetiae_contig6411.15090.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6411 10338..10487 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816708.9609826-UTR-L-elsbetiae_contig6411:9579..96661622816708.9609826-UTR-L-elsbetiae_contig6411:9579..9666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6411 9580..9666 +
1691683756.1467361-UTR-L-elsbetiae_contig6411:9579..96661691683756.1467361-UTR-L-elsbetiae_contig6411:9579..9666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6411 9580..9666 +
1622816708.9742424-UTR-L-elsbetiae_contig6411:10321..103371622816708.9742424-UTR-L-elsbetiae_contig6411:10321..10337Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6411 10322..10337 +
1691683756.1562018-UTR-L-elsbetiae_contig6411:10321..103371691683756.1562018-UTR-L-elsbetiae_contig6411:10321..10337Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6411 10322..10337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816708.9924731-CDS-L-elsbetiae_contig6411:10337..104871622816708.9924731-CDS-L-elsbetiae_contig6411:10337..10487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6411 10338..10487 +
1691683756.1647408-CDS-L-elsbetiae_contig6411:10337..104871691683756.1647408-CDS-L-elsbetiae_contig6411:10337..10487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6411 10338..10487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6411.15090.1

>prot_L-elsbetiae_contig6411.15090.1 ID=prot_L-elsbetiae_contig6411.15090.1|Name=mRNA_L-elsbetiae_contig6411.15090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=50bp
MSFLDGLCDLPEDIEISWRSFLHLEDVCSLTTLGAFASGLLALLTLAAVL
back to top

mRNA from alignment at L-elsbetiae_contig6411:9580..10487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6411.15090.1 ID=mRNA_L-elsbetiae_contig6411.15090.1|Name=mRNA_L-elsbetiae_contig6411.15090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=908bp|location=Sequence derived from alignment at L-elsbetiae_contig6411:9580..10487+ (Laminarionema elsbetiae ELsaHSoW15)
CTGACGCAGGGGAGAAAGCGGGCTACCTGCCGCACCCCGAGTGCCGAGAG
AGGAACTGGTTTGTCTGACAGATCAATAAGGCCGAAGGTAAGGGCATGTT
TCCCTCTTTTGCACCAGGAAGCCCGCGTGCGTGTGGAATGGTTACGATTA
AATCGATTGTATCATATGTTGAATCTGTGTGTGTTGTATGTTGTCTTCAC
ATGAAAAACCCGTTCGATCTCTCTATCCAGTTCACCTCCATCTGGCCGTA
CTAATCCAACACTGACGCGGTCGATTCCCGTGATCACAGTGTAACTTACC
CCCAAAAAAGGGTGCAGACTACTGAATTTACGAAGTAAAGTGTGTGTGAT
AAAAGCCCGTCATTCACCCGCATGATTCTTCCGCTTCGATACAAGGTGTG
TATCTATCTAAACCTGTAGCGCGCTGAAGCTTGATATTTTTTACGAAGTA
CTCTGGTGTGTGAAAAAATCCCGTTCAATCGCATGATTCTTCCGCCTCGA
TACAAGGCGTGTACACCTACATACCTGTACCGCGCTGAAGCGCTCCCTCT
GTGTCACAGGTCACAAGTGCATGCTTTGTCAACTCTCTCTGGATTTGATC
ACCTGGTCTTCGTGGGAGTGTTTTCGTCGCTCTCCCTCCCTTTACCACCC
CTCTCTTGCCCAGCACTTGTAACGTCTCTCTGCAATATCTCCCCCATTAC
CCCCCTGCCGACCATTTGGGGGCAAAAACAAAAAAAACGCAGCTCAACAC
CAGAGAAGATGAGCTTCCTGGACGGGCTCTGCGACCTCCCTGAAGACATC
GAGATCTCGTGGCGCTCCTTTCTGCACCTGGAGGACGTCTGCTCCCTAAC
CACGCTGGGCGCTTTCGCGTCGGGCCTGCTGGCGCTCCTCACCCTCGCCG
CCGTGCTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6411:9580..10487+

>mRNA_L-elsbetiae_contig6411.15090.1 ID=mRNA_L-elsbetiae_contig6411.15090.1|Name=mRNA_L-elsbetiae_contig6411.15090.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=300bp|location=Sequence derived from alignment at L-elsbetiae_contig6411:9580..10487+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCTTCCTGGACGGGCTCTGCGACCTCCCTGAAGACATCGAGATCTC
GTGGCGCTCCTTTCTGCACCTGGAGGACGTCTGCTCCCTAACCACGCTGG
GCGCTTTCGCGTCGGGCCTGCTGGCGCTCCTCACCCTCGCCGCCGTGCTG
ATGAGCTTCCTGGACGGGCTCTGCGACCTCCCTGAAGACATCGAGATCTC
GTGGCGCTCCTTTCTGCACCTGGAGGACGTCTGCTCCCTAACCACGCTGG
GCGCTTTCGCGTCGGGCCTGCTGGCGCTCCTCACCCTCGCCGCCGTGCTG
back to top