mRNA_L-elsbetiae_contig6300.14938.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6300.14938.1
Unique NamemRNA_L-elsbetiae_contig6300.14938.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6300.14938.1 vs. uniprot
Match: A0A6H5KJM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM5_9PHAE)

HSP 1 Score: 474 bits (1219), Expect = 2.820e-163
Identity = 248/392 (63.27%), Postives = 296/392 (75.51%), Query Frame = 1 
Query:   76 QPEFREDGAGGM-TASEDKRGSHADFLKKKFGRAMNHAAAFLSLGLFLEVAASFWTLGQAIASGVFVEADCGVRALSLYHNQELPRGCQQLDDSVVWFDEARTFSTFTSCGGDRLQGPNIEQLCDCSKYDKVFGGCAWAAAASTRDAIEGLCVAVPVIQLNEEHQEEFGTTYEWVLDSSELEFQDDCRPLNPEGFGDITIALLVVSLVIGIVEAYVGYKRWKDPLRGADLVVFGSLVEAAGVLSIWGLLVFAPQGIVQAQTDDNPQVSEHQFSFLVTLLGLVPIMTVVGTLAEVVFHRSAAAHGRLPYLGVLGNALIWLAAGVTEVLVTAYLVWRLQFWKSEEDEAEADKENWPVLVGAVVGLIVLEAVALLSVWAARFFFARAKSMLLGAK 1248
            QP+F  DG     T SE KR   A  LKK+  R M HAAAFLSLGLFLE+ A+FWTL QAIASGVF EADCGVRALSLYHN  LP  C+QLD SVVWFDE RT STFTSC G  L+ P I+QLCDC++YD+V  GC W +A+STRD IEGLCVAVPVI L  + QEE+GTTY+W+LDSSELE+QDDCRPL+PEGFGDITIALLVVSL + +VEAYVGYKRW++PL    LVV  S++E  G+ SIW LL F P GI++ +      VSE+Q+ FL  +L  V ++T  GTLAE+VF+ SA   GR  YLGVLGN+L WLA+ +TEV+VTAYLVWRLQ+W++ ++ A  D+E WPVLV AV+GL+VLE  ALL +W AR   ARA S LL AK
Sbjct:    7 QPDFDADGTAATGTVSEGKRNHRAACLKKQAIRGMKHAAAFLSLGLFLEIGATFWTLAQAIASGVFDEADCGVRALSLYHNDRLPSNCEQLDSSVVWFDEDRTVSTFTSCSG--LEDPPIDQLCDCARYDRVSTGCTWTSASSTRDEIEGLCVAVPVIALTSDLQEEYGTTYDWLLDSSELEYQDDCRPLSPEGFGDITIALLVVSLSLELVEAYVGYKRWRNPLSVRGLVVVASVLEGVGLFSIWCLLRFLPGGILETE------VSENQYKFLNIMLYGVLVVTFGGTLAEIVFYFSAP--GRFRYLGVLGNSLTWLASALTEVVVTAYLVWRLQWWENADETA--DEETWPVLVAAVIGLVVLEVAALLVLWIARVLIARATSALLTAK 386
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6300.14938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJM5_9PHAE2.820e-16363.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6300contigL-elsbetiae_contig6300:3278..5599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_000650.1
Exons2
Model size1248
Cds size1248
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816694.9643726-CDS-L-elsbetiae_contig6300:3277..33471622816694.9643726-CDS-L-elsbetiae_contig6300:3277..3347Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6300 3278..3347 +
1691683746.160517-CDS-L-elsbetiae_contig6300:3277..33471691683746.160517-CDS-L-elsbetiae_contig6300:3277..3347Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6300 3278..3347 +
1622816695.0145485-CDS-L-elsbetiae_contig6300:4421..55991622816695.0145485-CDS-L-elsbetiae_contig6300:4421..5599Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6300 4422..5599 +
1691683746.173111-CDS-L-elsbetiae_contig6300:4421..55991691683746.173111-CDS-L-elsbetiae_contig6300:4421..5599Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6300 4422..5599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6300.14938.1prot_L-elsbetiae_contig6300.14938.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6300 3278..5599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6300.14938.1

>prot_L-elsbetiae_contig6300.14938.1 ID=prot_L-elsbetiae_contig6300.14938.1|Name=mRNA_L-elsbetiae_contig6300.14938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=416bp
MHRSQSNGRATATMSVQQDQTPAVPQPEFREDGAGGMTASEDKRGSHADF
LKKKFGRAMNHAAAFLSLGLFLEVAASFWTLGQAIASGVFVEADCGVRAL
SLYHNQELPRGCQQLDDSVVWFDEARTFSTFTSCGGDRLQGPNIEQLCDC
SKYDKVFGGCAWAAAASTRDAIEGLCVAVPVIQLNEEHQEEFGTTYEWVL
DSSELEFQDDCRPLNPEGFGDITIALLVVSLVIGIVEAYVGYKRWKDPLR
GADLVVFGSLVEAAGVLSIWGLLVFAPQGIVQAQTDDNPQVSEHQFSFLV
TLLGLVPIMTVVGTLAEVVFHRSAAAHGRLPYLGVLGNALIWLAAGVTEV
LVTAYLVWRLQFWKSEEDEAEADKENWPVLVGAVVGLIVLEAVALLSVWA
ARFFFARAKSMLLGAK
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mRNA from alignment at L-elsbetiae_contig6300:3278..5599+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6300.14938.1 ID=mRNA_L-elsbetiae_contig6300.14938.1|Name=mRNA_L-elsbetiae_contig6300.14938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2322bp|location=Sequence derived from alignment at L-elsbetiae_contig6300:3278..5599+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATAGATCTCAATCAAACGGACGCGCCACGGCGACAATGAGTGTCCA
ACAAGATCAGACTCCCGCAGGTGAGCAGTTGGTGCCCATCCACCACGGGC
GTGTTCGATATATGGTACACAGTAGGGCTCTCGGTTGTGCCACCACCAAA
GCCTGCCTGGAATGGCGTATCTTTCCCGATATCAGCACAAGGTGGACGGC
CATCGTGCCCGATTCGGCTTGTTGGATGCAAACGAAAATAGACGTGCGCG
TTTTGGAGAGCTTTCAGACGCGCTCGCGGCTTGAGTGAGCAGTCGTCCTT
GCGTGAGCAGTCGTTCTGTTTGAACGATTTGTTCAGTCGTCCTTCTGGTA
GACTGCGTCTCGCTCGTGACACATTTTCTTTTTAATGTCTTCTTGTCCTC
CCATTATTGGCTTGTTCGTCGTCTGCCCCACTGGCCCCCATTCTCCACCA
CGGCTAGCTAGACGACCCAACCGGGGTCACACAGGACGGGGACCTCCTGC
GGTGCCTGCCTGTTATGTTTTTATCGCGAGCACATATGTACTGCTGTACT
GTTGACGAAGAGATGGTTGGCACGTGTCTCGCTTCCGACGCCTACCGTAG
GTGACACAAGATACCACCCCCCCTGGACTGACTTTTAGAGCTTCATTAGT
CCGTATCGAAGAGGGTGCCTGCCAGCACCAAACAACACATTTTGGGACAG
CCCTCGACTAGATCTTTCCAGCGCCACCCCCCCTTTGGCACTGGCACTCT
TCTTGCTGGGGAGGAATCGAACTTTGAAAATCTGTCCAGGGGGTGTGGTG
TCTTGAGTCACCTACGGTATGTTCCCAAGGGCCCTTCCTTTGAGGCACCC
GTGATGCGTGTGTTTCTTGCACGATAAGTATACAGCTCAGGAGCGAAGCA
TAACTTTTGAAGCCCCAAAAGAGGTCGAATCGAGAACAGCTTGGAATTTC
AACGAGATATAAAATACCTGCTTGCTGGCTTTGCCTCCTGACGATGATGG
GGCTGCTGAACGATGATTTACTTAATAGACCAACGCATCTTGTACATATG
TATTCCGGCGGGCGACGCTTGTAGAGGGCCGAGACATTTTTTCCACCGTC
AACGCTCGTGTGCCCCGCCCCTCTCTCGGCCCCTCACTGGCCAGTGCCCC
AACCCGAGTTCCGCGAGGATGGCGCCGGCGGCATGACCGCCTCCGAGGAC
AAGCGAGGCTCCCACGCCGATTTTCTCAAGAAGAAGTTTGGGCGGGCGAT
GAACCACGCGGCGGCGTTCCTGTCCCTGGGGCTGTTTCTGGAGGTGGCGG
CGTCGTTTTGGACGCTGGGCCAGGCGATCGCGTCGGGTGTCTTCGTCGAG
GCGGACTGCGGGGTCCGGGCCCTGTCCCTGTACCACAACCAAGAGCTGCC
GCGCGGCTGCCAGCAGCTGGACGACTCGGTGGTCTGGTTCGACGAGGCCC
GCACCTTCAGCACCTTCACCAGCTGCGGCGGCGACCGCCTCCAGGGCCCC
AACATCGAGCAGCTCTGCGACTGCTCCAAGTACGACAAGGTCTTCGGCGG
GTGCGCCTGGGCGGCGGCGGCCTCGACCCGCGACGCGATCGAGGGCCTGT
GCGTGGCCGTGCCGGTGATACAGCTCAACGAGGAGCACCAGGAGGAATTC
GGCACCACATATGAGTGGGTTCTGGACAGCTCGGAGCTCGAGTTCCAGGA
CGACTGCAGGCCGCTGAACCCGGAAGGCTTCGGAGACATCACGATAGCCC
TGCTCGTCGTCTCGCTGGTCATCGGCATCGTGGAGGCCTACGTGGGGTAC
AAGCGCTGGAAGGACCCCCTGCGGGGGGCCGACCTGGTCGTCTTCGGGTC
CTTGGTGGAGGCCGCGGGGGTGCTGTCGATCTGGGGGCTGCTGGTGTTCG
CGCCGCAGGGCATCGTCCAGGCCCAGACGGACGACAACCCCCAGGTCAGC
GAGCACCAGTTCAGCTTCTTGGTGACGCTGCTGGGCCTCGTCCCGATCAT
GACGGTCGTGGGCACGCTGGCGGAGGTCGTGTTCCACCGCTCCGCCGCGG
CGCACGGCCGGCTTCCCTACCTCGGCGTGCTCGGGAACGCGCTGATCTGG
CTCGCCGCGGGGGTCACCGAGGTCCTGGTGACGGCGTACCTCGTCTGGAG
GCTGCAGTTCTGGAAGAGCGAGGAGGACGAGGCCGAAGCGGACAAGGAGA
ACTGGCCCGTTCTCGTCGGGGCGGTGGTCGGTCTCATCGTCCTGGAGGCT
GTCGCCCTCCTGTCCGTGTGGGCAGCCCGTTTTTTCTTCGCCAGGGCCAA
GTCAATGCTCCTTGGAGCAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6300:3278..5599+

>mRNA_L-elsbetiae_contig6300.14938.1 ID=mRNA_L-elsbetiae_contig6300.14938.1|Name=mRNA_L-elsbetiae_contig6300.14938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2496bp|location=Sequence derived from alignment at L-elsbetiae_contig6300:3278..5599+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATAGATCTCAATCAAACGGACGCGCCACGGCGACAATGAGTGTCCA
ACAAGATCAGACTCCCGCAGATGCATAGATCTCAATCAAACGGACGCGCC
ACGGCGACAATGAGTGTCCAACAAGATCAGACTCCCGCAGTGCCCCAACC
CGAGTTCCGCGAGGATGGCGCCGGCGGCATGACCGCCTCCGAGGACAAGC
GAGGCTCCCACGCCGATTTTCTCAAGAAGAAGTTTGGGCGGGCGATGAAC
CACGCGGCGGCGTTCCTGTCCCTGGGGCTGTTTCTGGAGGTGGCGGCGTC
GTTTTGGACGCTGGGCCAGGCGATCGCGTCGGGTGTCTTCGTCGAGGCGG
ACTGCGGGGTCCGGGCCCTGTCCCTGTACCACAACCAAGAGCTGCCGCGC
GGCTGCCAGCAGCTGGACGACTCGGTGGTCTGGTTCGACGAGGCCCGCAC
CTTCAGCACCTTCACCAGCTGCGGCGGCGACCGCCTCCAGGGCCCCAACA
TCGAGCAGCTCTGCGACTGCTCCAAGTACGACAAGGTCTTCGGCGGGTGC
GCCTGGGCGGCGGCGGCCTCGACCCGCGACGCGATCGAGGGCCTGTGCGT
GGCCGTGCCGGTGATACAGCTCAACGAGGAGCACCAGGAGGAATTCGGCA
CCACATATGAGTGGGTTCTGGACAGCTCGGAGCTCGAGTTCCAGGACGAC
TGCAGGCCGCTGAACCCGGAAGGCTTCGGAGACATCACGATAGCCCTGCT
CGTCGTCTCGCTGGTCATCGGCATCGTGGAGGCCTACGTGGGGTACAAGC
GCTGGAAGGACCCCCTGCGGGGGGCCGACCTGGTCGTCTTCGGGTCCTTG
GTGGAGGCCGCGGGGGTGCTGTCGATCTGGGGGCTGCTGGTGTTCGCGCC
GCAGGGCATCGTCCAGGCCCAGACGGACGACAACCCCCAGGTCAGCGAGC
ACCAGTTCAGCTTCTTGGTGACGCTGCTGGGCCTCGTCCCGATCATGACG
GTCGTGGGCACGCTGGCGGAGGTCGTGTTCCACCGCTCCGCCGCGGCGCA
CGGCCGGCTTCCCTACCTCGGCGTGCTCGGGAACGCGCTGATCTGGCTCG
CCGCGGGGGTCACCGAGGTCCTGGTGACGGCGTACCTCGTCTGGAGGCTG
CAGTTCTGGAAGAGCGAGGAGGACGAGGCCGAAGCGGACAAGGAGAACTG
GCCCGTTCTCGTCGGGGCGGTGGTCGGTCTCATCGTCCTGGAGGCTGTCG
CCCTCCTGTCCGTGTGGGCAGCCCGTTTTTTCTTCGCCAGGGCCAAGTCA
ATGCTCCTTGGAGCAAAGTGCCCCAACCCGAGTTCCGCGAGGATGGCGCC
GGCGGCATGACCGCCTCCGAGGACAAGCGAGGCTCCCACGCCGATTTTCT
CAAGAAGAAGTTTGGGCGGGCGATGAACCACGCGGCGGCGTTCCTGTCCC
TGGGGCTGTTTCTGGAGGTGGCGGCGTCGTTTTGGACGCTGGGCCAGGCG
ATCGCGTCGGGTGTCTTCGTCGAGGCGGACTGCGGGGTCCGGGCCCTGTC
CCTGTACCACAACCAAGAGCTGCCGCGCGGCTGCCAGCAGCTGGACGACT
CGGTGGTCTGGTTCGACGAGGCCCGCACCTTCAGCACCTTCACCAGCTGC
GGCGGCGACCGCCTCCAGGGCCCCAACATCGAGCAGCTCTGCGACTGCTC
CAAGTACGACAAGGTCTTCGGCGGGTGCGCCTGGGCGGCGGCGGCCTCGA
CCCGCGACGCGATCGAGGGCCTGTGCGTGGCCGTGCCGGTGATACAGCTC
AACGAGGAGCACCAGGAGGAATTCGGCACCACATATGAGTGGGTTCTGGA
CAGCTCGGAGCTCGAGTTCCAGGACGACTGCAGGCCGCTGAACCCGGAAG
GCTTCGGAGACATCACGATAGCCCTGCTCGTCGTCTCGCTGGTCATCGGC
ATCGTGGAGGCCTACGTGGGGTACAAGCGCTGGAAGGACCCCCTGCGGGG
GGCCGACCTGGTCGTCTTCGGGTCCTTGGTGGAGGCCGCGGGGGTGCTGT
CGATCTGGGGGCTGCTGGTGTTCGCGCCGCAGGGCATCGTCCAGGCCCAG
ACGGACGACAACCCCCAGGTCAGCGAGCACCAGTTCAGCTTCTTGGTGAC
GCTGCTGGGCCTCGTCCCGATCATGACGGTCGTGGGCACGCTGGCGGAGG
TCGTGTTCCACCGCTCCGCCGCGGCGCACGGCCGGCTTCCCTACCTCGGC
GTGCTCGGGAACGCGCTGATCTGGCTCGCCGCGGGGGTCACCGAGGTCCT
GGTGACGGCGTACCTCGTCTGGAGGCTGCAGTTCTGGAAGAGCGAGGAGG
ACGAGGCCGAAGCGGACAAGGAGAACTGGCCCGTTCTCGTCGGGGCGGTG
GTCGGTCTCATCGTCCTGGAGGCTGTCGCCCTCCTGTCCGTGTGGGCAGC
CCGTTTTTTCTTCGCCAGGGCCAAGTCAATGCTCCTTGGAGCAAAG
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