mRNA_L-elsbetiae_contig6237.14834.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6237.14834.1
Unique NamemRNA_L-elsbetiae_contig6237.14834.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6237.14834.1 vs. uniprot
Match: D7FVU0_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU0_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.310e-13
Identity = 40/74 (54.05%), Postives = 45/74 (60.81%), Query Frame = 1
Query:   40 GEVPFNGTPLDFTNHCLREKKVGGVEDAREKQMYRLEAVRRLLLRVEAVHAVSWLWPRETLLASCVAEDSSRTA 261
            GEV  NGTPL  T   L EK +   E A E+ + RLEA+RRLLLR EAVHAVSWLWP +       AE   R A
Sbjct:  310 GEVQCNGTPLALTTSYLWEKILDNGEPATEEHLQRLEAIRRLLLRAEAVHAVSWLWPSDASFVGHAAEKWPRAA 383          
BLAST of mRNA_L-elsbetiae_contig6237.14834.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.030e-13
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   40 GEVPFNGTPLDFTNHCLREKKVGGVEDAREKQMYRLEAVRRLLLRVEAVHAVSWLWPRE 216
            G V +N TPL  T   LREK V G + A E+Q++RL+A+RRLLLRV+AVHAVSWLWP +
Sbjct:  102 GGVEYNDTPLAVTTSLLREKVVDG-KPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSD 159          
BLAST of mRNA_L-elsbetiae_contig6237.14834.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 5.820e-11
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   25 MSTPGGEVPFNGTPLDFTNHCLREKKVGGVEDAREKQMYRLEAVRRLLLRVEAVHAVSWLWP 210
            M+  GG V FN TPL FT   LR+K V   + A ++ + RLEA+ RLLLRV+AVHAVSWLWP
Sbjct:  418 MNLKGGVV-FNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWP 478          
BLAST of mRNA_L-elsbetiae_contig6237.14834.1 vs. uniprot
Match: D7G1Y3_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y3_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.000e-10
Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   40 GEVPFNGTPLDFTNHCLREKKVGGVEDAREKQMYRLEAVRRLLLRVEAVHAVSWLWPRETLLASCVAEDSS 252
            G V F+ TPL  T   LR+ +  G +D +E+Q+ RLEAVRRLLLRVEAVHA SW+WP     A  VA+D++
Sbjct:  268 GLVGFSDTPLCRTIRILRDVETEGKDD-KEEQLGRLEAVRRLLLRVEAVHATSWVWPSSA--AGSVAQDAA 335          
BLAST of mRNA_L-elsbetiae_contig6237.14834.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 6.840e-10
Identity = 38/80 (47.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query:   61 TPLDFTNHCLREK-KVGGVEDAREKQMYRLEAVRRLLLRVEAVHAVSWLWPRETLLASCVAEDSSRTARKTPASGTQLAL 297
            TPL  T + +R+K KV G   A  +Q+++LEA+RRLLLRVEAVHAVSWLWP +    S +   ++R   +T A  T + L
Sbjct:  333 TPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDI---STITRAAARGTDRTTAISTAVTL 409          
BLAST of mRNA_L-elsbetiae_contig6237.14834.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 3.200e-9
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   55 NGTPLDFTNH-CLREKKVGGVEDAREKQMYRLEAVRRLLLRVEAVHAVSWLWPRETLLASCVAEDSSRTARKTP 273
            N TPL++ N   LRE    G   A ++Q+ RLEA RR+LLRV AVHAVSW+WP +  L +  A +S RTA+ +P
Sbjct:  305 NVTPLEYVNDWALRE--TNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPA-NSPRTAKHSP 375          
BLAST of mRNA_L-elsbetiae_contig6237.14834.1 vs. uniprot
Match: A0A6H5KJ94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ94_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.730e-8
Identity = 30/72 (41.67%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   61 TPLDFTNHCLREKKVGGVEDAREKQMYRLEAVRRLLLRVEAVHAVSWLWP-RETLLASCVAEDSSRTARKTP 273
            TP++     +  KKV G ED  ++Q+  +EA+RRLLL+VEA+ A++ LWP     +A   AE + RT+R  P
Sbjct:  140 TPMEIAMRRILRKKVEGKEDINDEQLRSVEAIRRLLLQVEAIRAIACLWPGNNPSVAHAAAEGTGRTSRARP 211          
BLAST of mRNA_L-elsbetiae_contig6237.14834.1 vs. uniprot
Match: D7G1I8_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I8_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 3.440e-7
Identity = 35/77 (45.45%), Postives = 43/77 (55.84%), Query Frame = 1
Query:   49 PFNGTPL-------DFTNHCLREKKVGGVEDAREKQMYRLEAVRRLLLRVEAVHAVSWLWPRETLLASCVAEDSSRT 258
            PF  TPL          +H L E +V G  D  E+Q ++L AV RLLLRVEAVHA SWLW  +    +  AE + RT
Sbjct:  285 PFGRTPLLCSIEDEGLVDHYLGENRVIG-RDITEEQAHKLNAVHRLLLRVEAVHAASWLWVSDAPDIAHTAEVTKRT 360          
BLAST of mRNA_L-elsbetiae_contig6237.14834.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 6.070e-7
Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 1
Query:   16 DFTMSTPGGEVPF--NGTPLDFTNHCLREKKVGGVEDAREKQMYRLEAVRRLLLRVEAVHAVSWLWPRETLLASCV---AEDSSRTARKTPASGTQLAL 297
            D T + P   +P   N TP+  T   L +    G E   E+Q+  LEA+ RLLLRVEA+HAVSWLW  +  + +C    A+ + RT  K+ A GT L L
Sbjct:  214 DTTSTVPIDGLPGTDNITPMGLTMLLLHDL---GTEPLTEEQLNALEAIHRLLLRVEALHAVSWLWSSD--ICNCTYSTAQGTDRTTSKSTA-GTPLVL 306          
BLAST of mRNA_L-elsbetiae_contig6237.14834.1 vs. uniprot
Match: A0A6H5KSA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA9_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.730e-6
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   52 FNGTPLDFTNHCLREKKVGGVEDAREKQMYRLEAVRRLLLRVEAVHAVSWLWPRETL 222
            F GTPL +T   LR+++  G+ D+ + +   LEAVRR+LL++EA+ AVSW W  + L
Sbjct:  493 FRGTPLAYTTWLLRDQQARGI-DSTKGEPCSLEAVRRMLLQLEAIRAVSWCWQSDAL 548          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6237.14834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FVU0_ECTSI1.310e-1354.05EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LSC5_ECTSI2.030e-1361.02EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FT11_ECTSI5.820e-1158.06EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G1Y3_ECTSI1.000e-1053.52EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
A0A6H5KJA9_9PHAE6.840e-1047.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVU3_ECTSI3.200e-950.00EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KJ94_9PHAE1.730e-841.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1I8_ECTSI3.440e-745.45EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FXY7_ECTSI6.070e-741.41EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KSA9_9PHAE1.730e-645.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6237contigL-elsbetiae_contig6237:7093..7392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog2880.D7FVU0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size300
Cds size276
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816684.854454-UTR-L-elsbetiae_contig6237:7092..71161622816684.854454-UTR-L-elsbetiae_contig6237:7092..7116Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6237 7093..7116 +
1691683738.6439354-UTR-L-elsbetiae_contig6237:7092..71161691683738.6439354-UTR-L-elsbetiae_contig6237:7092..7116Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6237 7093..7116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816684.8652105-CDS-L-elsbetiae_contig6237:7116..73921622816684.8652105-CDS-L-elsbetiae_contig6237:7116..7392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6237 7117..7392 +
1691683738.6573296-CDS-L-elsbetiae_contig6237:7116..73921691683738.6573296-CDS-L-elsbetiae_contig6237:7116..7392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6237 7117..7392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6237.14834.1prot_L-elsbetiae_contig6237.14834.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6237 7117..7392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6237.14834.1

>prot_L-elsbetiae_contig6237.14834.1 ID=prot_L-elsbetiae_contig6237.14834.1|Name=mRNA_L-elsbetiae_contig6237.14834.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MSTPGGEVPFNGTPLDFTNHCLREKKVGGVEDAREKQMYRLEAVRRLLLR
VEAVHAVSWLWPRETLLASCVAEDSSRTARKTPASGTQLALM
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mRNA from alignment at L-elsbetiae_contig6237:7093..7392+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6237.14834.1 ID=mRNA_L-elsbetiae_contig6237.14834.1|Name=mRNA_L-elsbetiae_contig6237.14834.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=300bp|location=Sequence derived from alignment at L-elsbetiae_contig6237:7093..7392+ (Laminarionema elsbetiae ELsaHSoW15)
ACGTCATTCGCCATTGACTTCACGATGAGCACTCCAGGGGGCGAGGTGCC ATTCAACGGTACACCGCTGGATTTCACCAACCATTGTCTCCGTGAAAAGA AAGTGGGAGGAGTTGAAGACGCGAGAGAAAAACAGATGTACAGGCTGGAG GCTGTCCGCCGCTTGCTGTTGCGGGTAGAGGCAGTGCATGCCGTGTCTTG GTTGTGGCCCAGGGAGACCCTCCTCGCCAGCTGTGTTGCAGAAGATTCAA GCAGGACCGCCAGGAAGACTCCGGCGAGCGGCACGCAGCTGGCGTTGATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6237:7093..7392+

>mRNA_L-elsbetiae_contig6237.14834.1 ID=mRNA_L-elsbetiae_contig6237.14834.1|Name=mRNA_L-elsbetiae_contig6237.14834.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig6237:7093..7392+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCACTCCAGGGGGCGAGGTGCCATTCAACGGTACACCGCTGGATTT
CACCAACCATTGTCTCCGTGAAAAGAAAGTGGGAGGAGTTGAAGACGCGA
GAGAAAAACAGATGTACAGGCTGGAGGCTGTCCGCCGCTTGCTGTTGCGG
GTAGAGGCAGTGCATGCCGTGTCTTGGTTGTGGCCCAGGGAGACCCTCCT
CGCCAGCTGTGTTGCAGAAGATTCAAGCAGGACCGCCAGGAAGACTCCGG
CGAGCGGCACGCAGCTGGCGTTGATGATGAGCACTCCAGGGGGCGAGGTG
CCATTCAACGGTACACCGCTGGATTTCACCAACCATTGTCTCCGTGAAAA
GAAAGTGGGAGGAGTTGAAGACGCGAGAGAAAAACAGATGTACAGGCTGG
AGGCTGTCCGCCGCTTGCTGTTGCGGGTAGAGGCAGTGCATGCCGTGTCT
TGGTTGTGGCCCAGGGAGACCCTCCTCGCCAGCTGTGTTGCAGAAGATTC
AAGCAGGACCGCCAGGAAGACTCCGGCGAGCGGCACGCAGCTGGCGTTGA
TG
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