mRNA_L-elsbetiae_contig6237.14833.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6237.14833.1
Unique NamemRNA_L-elsbetiae_contig6237.14833.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6237.14833.1 vs. uniprot
Match: D7G1I8_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I8_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 6.870e-16
Identity = 40/57 (70.18%), Postives = 48/57 (84.21%), Query Frame = 2
Query:   92 IPPAQPHWPRGPSKNELHAAAYHGSTERTIALLSRGLINIDQGEPEGFTPLMLAAQR 262
            I PAQ  WPRGP KNELH AA  GST+RT A+LS GLINI+QG+P+G+TPLM+A+QR
Sbjct:    2 IMPAQEKWPRGP-KNELHFAADTGSTQRTAAILSSGLININQGDPDGWTPLMVASQR 57          
BLAST of mRNA_L-elsbetiae_contig6237.14833.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 5.330e-12
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query:  113 WPRGPSKNELHAAAYHGSTERTIALLSRGLINIDQGEPEGFTPLMLAAQR 262
            WPRGP+ N+LH AAYHGS +R  ALLS G ++I+QG P+G+TPLMLA ++
Sbjct:   28 WPRGPT-NQLHKAAYHGSADRVDALLSTGSVDINQGNPKGWTPLMLATEK 76          
BLAST of mRNA_L-elsbetiae_contig6237.14833.1 vs. uniprot
Match: D7G1Y7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Y7_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 5.430e-12
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 2
Query:  113 WPRGPSKNELHAAAYHGSTERTIALLSRGLINIDQGEPEGFTPLMLAA 256
            WPRGP +NELH AA+ GS +RT ALLS G ++++QG+P GFTPLMLA+
Sbjct:    5 WPRGP-RNELHEAAHFGSADRTRALLSSGAVDVNQGDPAGFTPLMLAS 51          
BLAST of mRNA_L-elsbetiae_contig6237.14833.1 vs. uniprot
Match: D7FN71_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN71_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 7.260e-12
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 2
Query:   98 PAQPHWPRGPSKNELHAAAYHGSTERTIALLSRGLINIDQGEPEGFTPLMLAAQR 262
            P  P W RGP  NELH AA  GS ER  +LL+RG+INI+QG+P G TPLM AAQ+
Sbjct:    3 PTPPKWSRGPL-NELHQAAIRGSAERINSLLTRGVININQGDPAGRTPLMCAAQK 56          
BLAST of mRNA_L-elsbetiae_contig6237.14833.1 vs. uniprot
Match: A0A6H5JKV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKV7_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.610e-11
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 2
Query:   98 PAQPHWPRGPSKNELHAAAYHGSTERTIALLSRGLINIDQGEPEGFTPLMLAAQR 262
            P  P  PRGP  NELH AA  G TER  ++L+RG+INI+QG+P G TPLM AAQ+
Sbjct:    3 PTPPKLPRGPL-NELHQAAMRGFTERINSVLTRGVININQGDPTGRTPLMCAAQK 56          
BLAST of mRNA_L-elsbetiae_contig6237.14833.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.800e-8
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 2
Query:  119 RGPSKNELHAAAYHGSTERTIALLSRGLINIDQGEPEGFTPLMLAAQ 259
            RGP +NELH AA  GS++RT +LL+ G I+IDQG+P G+TPLM AA+
Sbjct:    9 RGP-RNELHKAALDGSSQRTESLLAGGRIDIDQGDPRGWTPLMFAAE 54          
BLAST of mRNA_L-elsbetiae_contig6237.14833.1 vs. uniprot
Match: Q8QN90_ESV1K (EsV-1-199 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN90_ESV1K)

HSP 1 Score: 55.5 bits (132), Expect = 5.580e-7
Identity = 27/47 (57.45%), Postives = 34/47 (72.34%), Query Frame = 2
Query:  116 PRGPSKNELHAAAYHGSTERTIALLSRGLINIDQGEPEGFTPLMLAA 256
            PRGP    LH+AA HGS E+   ++S G + I+QG PEG+TPLMLAA
Sbjct:    9 PRGPW-TALHSAANHGSFEQVFGIVSSGSVQINQGSPEGWTPLMLAA 54          
BLAST of mRNA_L-elsbetiae_contig6237.14833.1 vs. uniprot
Match: D7G1Y3_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y3_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.410e-6
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 2
Query:   80 MPSAIPPAQPHWPRGPSKNELHAAAYHGSTERTIALLSRGLINIDQGEPEGFTPLMLA 253
            MPS  PP Q   PRG ++NELH AA +      +ALL  G ++IDQG+P G+TPLM A
Sbjct:    1 MPSVAPPKQS--PRG-NRNELHDAADNDLIAEVLALLRGGSVDIDQGDPHGWTPLMFA 55          
BLAST of mRNA_L-elsbetiae_contig6237.14833.1 vs. uniprot
Match: D8LPL4_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL4_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 4.970e-6
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 2
Query:  113 WPRGPSKNELHAAAYHGSTERTIALLSRGLINIDQGEPEGFTPLMLAA 256
            +PRGP    LH+AA  GS E+   ++S G + I+QG PEG+TPLMLAA
Sbjct:    8 YPRGPW-TALHSAANDGSFEQVFGIVSSGSVQINQGSPEGWTPLMLAA 54          
BLAST of mRNA_L-elsbetiae_contig6237.14833.1 vs. uniprot
Match: D7FXH6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH6_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 5.030e-6
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 2
Query:  128 SKNELHAAAYHGSTERTIALLSRGLINIDQGEPEGFTPLMLAAQ 259
            S  +LH AA  G  +RT+ALLSR L N+DQ + +GFTPL+ AAQ
Sbjct:    2 SWTDLHQAAARGMVQRTLALLSRPLANVDQRDNDGFTPLIAAAQ 45          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6237.14833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G1I8_ECTSI6.870e-1670.18EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G1U9_ECTSI5.330e-1262.00EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G1Y7_ECTSI5.430e-1264.58EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FN71_ECTSI7.260e-1261.82EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JKV7_9PHAE1.610e-1160.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL76_ECTSI1.800e-861.70EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QN90_ESV1K5.580e-757.45EsV-1-199 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D7G1Y3_ECTSI1.410e-651.72EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
D8LPL4_ECTSI4.970e-654.17EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FXH6_ECTSI5.030e-656.82Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6237contigL-elsbetiae_contig6237:6030..6291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue3.9e-13
Seed eggNOG ortholog2880.D7G1I8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size264
Cds size183
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816684.8081377-UTR-L-elsbetiae_contig6237:6029..61081622816684.8081377-UTR-L-elsbetiae_contig6237:6029..6108Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6237 6030..6108 +
1691683738.611682-UTR-L-elsbetiae_contig6237:6029..61081691683738.611682-UTR-L-elsbetiae_contig6237:6029..6108Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6237 6030..6108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816684.8206756-CDS-L-elsbetiae_contig6237:6108..62911622816684.8206756-CDS-L-elsbetiae_contig6237:6108..6291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6237 6109..6291 +
1691683738.629154-CDS-L-elsbetiae_contig6237:6108..62911691683738.629154-CDS-L-elsbetiae_contig6237:6108..6291Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6237 6109..6291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6237.14833.1prot_L-elsbetiae_contig6237.14833.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6237 6109..6291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6237.14833.1

>prot_L-elsbetiae_contig6237.14833.1 ID=prot_L-elsbetiae_contig6237.14833.1|Name=mRNA_L-elsbetiae_contig6237.14833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
MPSAIPPAQPHWPRGPSKNELHAAAYHGSTERTIALLSRGLINIDQGEPE
GFTPLMLAAQR
back to top

mRNA from alignment at L-elsbetiae_contig6237:6030..6291+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6237.14833.1 ID=mRNA_L-elsbetiae_contig6237.14833.1|Name=mRNA_L-elsbetiae_contig6237.14833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=262bp|location=Sequence derived from alignment at L-elsbetiae_contig6237:6030..6291+ (Laminarionema elsbetiae ELsaHSoW15)
GGTAGAAAGAGGGTGAGGTATAATTCGCTTAAGTCTTCACCTGCTCATCG TGGCCATCGTGTTTCTGCACGCTGATGATATGCCGTCAGCGATTCCTCCC GCACAGCCGCACTGGCCTCGAGGGCCTAGTAAGAATGAACTGCACGCTGC CGCGTACCATGGATCCACCGAGCGCACGATAGCCCTGCTCTCTAGGGGAT TGATCAACATCGACCAAGGCGAACCCGAAGGCTTCACCCCCCTCATGTTA GCCGCCCAGAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6237:6030..6291+

>mRNA_L-elsbetiae_contig6237.14833.1 ID=mRNA_L-elsbetiae_contig6237.14833.1|Name=mRNA_L-elsbetiae_contig6237.14833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig6237:6030..6291+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGTCAGCGATTCCTCCCGCACAGCCGCACTGGCCTCGAGGGCCTAG
TAAGAATGAACTGCACGCTGCCGCGTACCATGGATCCACCGAGCGCACGA
TAGCCCTGCTCTCTAGGGGATTGATCAACATCGACCAAGGCGAACCCGAA
GGCTTCACCCCCCTCATGTTAGCCGCCCAGAGGATGCCGTCAGCGATTCC
TCCCGCACAGCCGCACTGGCCTCGAGGGCCTAGTAAGAATGAACTGCACG
CTGCCGCGTACCATGGATCCACCGAGCGCACGATAGCCCTGCTCTCTAGG
GGATTGATCAACATCGACCAAGGCGAACCCGAAGGCTTCACCCCCCTCAT
GTTAGCCGCCCAGAGG
back to top