mRNA_L-elsbetiae_contig616.14731.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig616.14731.1
Unique NamemRNA_L-elsbetiae_contig616.14731.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig616.14731.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.350e-13
Identity = 113/178 (63.48%), Postives = 132/178 (74.16%), Query Frame = 1 
Query:  289 LDLIAQVLTAKQWAELLKAPLECAARQGNRGLAQKLLGAGAECGDSLHAATRGGHEGIANDLLENGAPVSAKGAYRYTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVILPCGYLETSVLHIAAEGGLVDIMRAAIERGADVNTGDANQNT 822
            +D I ++LT++Q AELL+A LE AA +GN+ LAQ+L+ AGAE GD+LH A  GGH  I +DLLE+ A ++A      TP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   L     +    H AA  G V+I+RA IE GADV+  DA Q T
Sbjct:    2 VDFIFEILTSQQLAELLRALLEHAAAKGNKDLAQRLVRAGAEIGDALHRAVDGGHREIVSDLLESEASLAATDMDGRTPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLRSTQFKCPATHAAALEGHVEILRAIIEHGADVDAVDAQQRT 179
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig616.14731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXK5_9PHAE2.350e-1363.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig616contigL-elsbetiae_contig616:15135..16130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue8.4e-25
Seed eggNOG ortholog2880.D8LL12
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size998
Cds size996
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816674.316324-CDS-L-elsbetiae_contig616:15134..161301622816674.316324-CDS-L-elsbetiae_contig616:15134..16130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig616 15135..16130 +
1691683730.4929745-CDS-L-elsbetiae_contig616:15134..161301691683730.4929745-CDS-L-elsbetiae_contig616:15134..16130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig616 15135..16130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig616.14731.1prot_L-elsbetiae_contig616.14731.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig616 15135..16130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig616.14731.1

>prot_L-elsbetiae_contig616.14731.1 ID=prot_L-elsbetiae_contig616.14731.1|Name=mRNA_L-elsbetiae_contig616.14731.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=332bp
HNTRARGKIPSVFSSASSRFVSLRWSFSRPTRCCCHIHRLYVVQQAPERE
RSTLEKLQSKPQQPRLPPKVRTGWITQGDMTNRDRREALRGAEEETLDLI
AQVLTAKQWAELLKAPLECAARQGNRGLAQKLLGAGAECGDSLHAATRGG
HEGIANDLLENGAPVSAKGAYRYTPLHVAAEKGKTEMVQLLLLHGADKDA
LDNREWTPLGVAAWHGHVAAALALLAGGADVILPCGYLETSVLHIAAEGG
LVDIMRAAIERGADVNTGDANQNTPLHIAACYNRVQAIDVLMEAGANIQT
RNDDGSTPLHLAAGDASLKAVLALLKHGADVK
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mRNA from alignment at L-elsbetiae_contig616:15135..16130+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig616.14731.1 ID=mRNA_L-elsbetiae_contig616.14731.1|Name=mRNA_L-elsbetiae_contig616.14731.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig616:15135..16130+ (Laminarionema elsbetiae ELsaHSoW15)
CACAACACGCGGGCTCGTGGGAAGATACCTTCGGTCTTTTCCTCCGCGTC
TTCCCGTTTCGTTAGCTTGAGGTGGTCGTTTTCAAGGCCGACACGCTGCT
GCTGCCACATACACCGACTCTACGTTGTACAGCAAGCACCAGAGAGAGAG
AGATCAACTCTTGAGAAACTGCAAAGCAAACCCCAGCAGCCTAGACTACC
TCCAAAGGTAAGAACAGGCTGGATTACGCAAGGCGATATGACAAACAGGG
ACAGACGAGAAGCACTTCGAGGAGCAGAAGAGGAGACGTTGGATCTCATT
GCCCAAGTCTTGACAGCAAAACAGTGGGCCGAGTTGCTGAAAGCCCCACT
CGAGTGTGCCGCACGCCAGGGCAACAGAGGCCTCGCACAGAAGCTGCTAG
GGGCAGGAGCAGAGTGTGGGGATTCGCTGCATGCAGCCACTCGGGGCGGC
CATGAAGGGATCGCGAATGATTTGCTGGAGAATGGAGCACCTGTTTCCGC
CAAGGGTGCGTATCGTTACACTCCTCTCCATGTTGCCGCCGAAAAGGGGA
AAACAGAGATGGTGCAGCTGCTGTTGCTCCACGGGGCCGACAAAGATGCG
TTGGACAACCGCGAATGGACACCGCTTGGTGTGGCCGCCTGGCATGGCCA
CGTGGCTGCCGCACTAGCTCTCCTGGCTGGCGGCGCAGACGTCATCCTTC
CGTGCGGCTACTTGGAGACGTCCGTTTTGCACATTGCGGCTGAGGGAGGT
CTTGTTGACATCATGAGGGCGGCGATCGAGCGCGGGGCGGACGTGAACAC
TGGTGACGCGAACCAAAACACACCCCTGCACATTGCCGCATGTTACAACC
GCGTGCAGGCGATCGACGTACTCATGGAGGCTGGGGCCAATATTCAAACG
CGGAATGATGACGGCAGCACACCTCTTCACCTGGCTGCCGGCGACGCCAG
TCTCAAAGCCGTGCTGGCCCTCTTGAAGCATGGTGCGGACGTCAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig616:15135..16130+

>mRNA_L-elsbetiae_contig616.14731.1 ID=mRNA_L-elsbetiae_contig616.14731.1|Name=mRNA_L-elsbetiae_contig616.14731.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1992bp|location=Sequence derived from alignment at L-elsbetiae_contig616:15135..16130+ (Laminarionema elsbetiae ELsaHSoW15)
CACAACACGCGGGCTCGTGGGAAGATACCTTCGGTCTTTTCCTCCGCGTC
TTCCCGTTTCGTTAGCTTGAGGTGGTCGTTTTCAAGGCCGACACGCTGCT
GCTGCCACATACACCGACTCTACGTTGTACAGCAAGCACCAGAGAGAGAG
AGATCAACTCTTGAGAAACTGCAAAGCAAACCCCAGCAGCCTAGACTACC
TCCAAAGGTAAGAACAGGCTGGATTACGCAAGGCGATATGACAAACAGGG
ACAGACGAGAAGCACTTCGAGGAGCAGAAGAGGAGACGTTGGATCTCATT
GCCCAAGTCTTGACAGCAAAACAGTGGGCCGAGTTGCTGAAAGCCCCACT
CGAGTGTGCCGCACGCCAGGGCAACAGAGGCCTCGCACAGAAGCTGCTAG
GGGCAGGAGCAGAGTGTGGGGATTCGCTGCATGCAGCCACTCGGGGCGGC
CATGAAGGGATCGCGAATGATTTGCTGGAGAATGGAGCACCTGTTTCCGC
CAAGGGTGCGTATCGTTACACTCCTCTCCATGTTGCCGCCGAAAAGGGGA
AAACAGAGATGGTGCAGCTGCTGTTGCTCCACGGGGCCGACAAAGATGCG
TTGGACAACCGCGAATGGACACCGCTTGGTGTGGCCGCCTGGCATGGCCA
CGTGGCTGCCGCACTAGCTCTCCTGGCTGGCGGCGCAGACGTCATCCTTC
CGTGCGGCTACTTGGAGACGTCCGTTTTGCACATTGCGGCTGAGGGAGGT
CTTGTTGACATCATGAGGGCGGCGATCGAGCGCGGGGCGGACGTGAACAC
TGGTGACGCGAACCAAAACACACCCCTGCACATTGCCGCATGTTACAACC
GCGTGCAGGCGATCGACGTACTCATGGAGGCTGGGGCCAATATTCAAACG
CGGAATGATGACGGCAGCACACCTCTTCACCTGGCTGCCGGCGACGCCAG
TCTCAAAGCCGTGCTGGCCCTCTTGAAGCATGGTGCGGACGTCAAACACA
ACACGCGGGCTCGTGGGAAGATACCTTCGGTCTTTTCCTCCGCGTCTTCC
CGTTTCGTTAGCTTGAGGTGGTCGTTTTCAAGGCCGACACGCTGCTGCTG
CCACATACACCGACTCTACGTTGTACAGCAAGCACCAGAGAGAGAGAGAT
CAACTCTTGAGAAACTGCAAAGCAAACCCCAGCAGCCTAGACTACCTCCA
AAGGTAAGAACAGGCTGGATTACGCAAGGCGATATGACAAACAGGGACAG
ACGAGAAGCACTTCGAGGAGCAGAAGAGGAGACGTTGGATCTCATTGCCC
AAGTCTTGACAGCAAAACAGTGGGCCGAGTTGCTGAAAGCCCCACTCGAG
TGTGCCGCACGCCAGGGCAACAGAGGCCTCGCACAGAAGCTGCTAGGGGC
AGGAGCAGAGTGTGGGGATTCGCTGCATGCAGCCACTCGGGGCGGCCATG
AAGGGATCGCGAATGATTTGCTGGAGAATGGAGCACCTGTTTCCGCCAAG
GGTGCGTATCGTTACACTCCTCTCCATGTTGCCGCCGAAAAGGGGAAAAC
AGAGATGGTGCAGCTGCTGTTGCTCCACGGGGCCGACAAAGATGCGTTGG
ACAACCGCGAATGGACACCGCTTGGTGTGGCCGCCTGGCATGGCCACGTG
GCTGCCGCACTAGCTCTCCTGGCTGGCGGCGCAGACGTCATCCTTCCGTG
CGGCTACTTGGAGACGTCCGTTTTGCACATTGCGGCTGAGGGAGGTCTTG
TTGACATCATGAGGGCGGCGATCGAGCGCGGGGCGGACGTGAACACTGGT
GACGCGAACCAAAACACACCCCTGCACATTGCCGCATGTTACAACCGCGT
GCAGGCGATCGACGTACTCATGGAGGCTGGGGCCAATATTCAAACGCGGA
ATGATGACGGCAGCACACCTCTTCACCTGGCTGCCGGCGACGCCAGTCTC
AAAGCCGTGCTGGCCCTCTTGAAGCATGGTGCGGACGTCAAA
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