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Homology
BLAST of mRNA_L-elsbetiae_contig6128.14690.1 vs. uniprot
Match: A0A6H5JX16_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JX16_9PHAE) HSP 1 Score: 262 bits (669), Expect = 8.060e-82 Identity = 148/232 (63.79%), Postives = 174/232 (75.00%), Query Frame = 1
Query: 7 MALSRSAALLISTLTSCAVKEVWGFLPASLTLT-----RCPTINNPAQGVNTATRPAAAEPSYVVCLSSASPFEGVEHDNSEDDVDVVQRQAEQLEEMIRGSRGIVVEAIEREWREEMLRVLSDEGERLCLESYEGYLDRGRGAIFVNVDMGLSSSRDGHDTAPCHAVFRSLEEVVMERSSRVKPADQMEIIQRCQVYDPEAAFVVVFGHKGMLGVQVMRPSLAPGELHRTR 687
M L +A LL STL SC + G P + L R +++ + + + + A A + +SPFE VEH ++ED+VDV+QR+AEQLE MIRGSRGIVVEAIEREWREEMLRVL +EGE LC +YEGYLDRGRG IFVNVDMGLSSS GHD APCHAVF SLEEVV ERSSRVKPADQM+IIQRCQ YDPEA FV+VFG+KGMLGVQV+RPS+APGE+ R+R
Sbjct: 1 MQLCGTAVLLASTLASC--RAFTGVRPLVVPLAPAAHVRLRHVSSSSDPLGSGSSRARATGPIPNVVRFSSPFEDVEHGDNEDEVDVMQREAEQLEAMIRGSRGIVVEAIEREWREEMLRVLGEEGEMLCSLAYEGYLDRGRGVIFVNVDMGLSSSNKGHDGAPCHAVFCSLEEVVTERSSRVKPADQMQIIQRCQEYDPEAGFVLVFGYKGMLGVQVIRPSMAPGEVFRSR 230
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 63.2 |
| Seed ortholog evalue | 1.9e-07 |
| Seed eggNOG ortholog | 2880.D8LKQ0 |
| Hectar predicted targeting category | signal peptide |
| EggNOG OGs | 2F0BR@1,2T1HY@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_000920.1 |
| Exons | 3 |
| Model size | 1442 |
| Cds size | 693 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816670.5017788-UTR-L-elsbetiae_contig6128:2234..2240 | 1622816670.5017788-UTR-L-elsbetiae_contig6128:2234..2240 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6128 2235..2240 + |
| 1691683727.7348757-UTR-L-elsbetiae_contig6128:2234..2240 | 1691683727.7348757-UTR-L-elsbetiae_contig6128:2234..2240 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6128 2235..2240 + |
| 1622816670.5591207-UTR-L-elsbetiae_contig6128:3598..4341 | 1622816670.5591207-UTR-L-elsbetiae_contig6128:3598..4341 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6128 3599..4341 + |
| 1691683727.7798786-UTR-L-elsbetiae_contig6128:3598..4341 | 1691683727.7798786-UTR-L-elsbetiae_contig6128:3598..4341 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6128 3599..4341 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816670.5159347-CDS-L-elsbetiae_contig6128:2240..2663 | 1622816670.5159347-CDS-L-elsbetiae_contig6128:2240..2663 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6128 2241..2663 + |
| 1691683727.75081-CDS-L-elsbetiae_contig6128:2240..2663 | 1691683727.75081-CDS-L-elsbetiae_contig6128:2240..2663 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6128 2241..2663 + |
| 1622816670.5303717-CDS-L-elsbetiae_contig6128:3112..3277 | 1622816670.5303717-CDS-L-elsbetiae_contig6128:3112..3277 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6128 3113..3277 + |
| 1691683727.7613392-CDS-L-elsbetiae_contig6128:3112..3277 | 1691683727.7613392-CDS-L-elsbetiae_contig6128:3112..3277 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6128 3113..3277 + |
| 1622816670.5455787-CDS-L-elsbetiae_contig6128:3493..3598 | 1622816670.5455787-CDS-L-elsbetiae_contig6128:3493..3598 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6128 3494..3598 + |
| 1691683727.7710865-CDS-L-elsbetiae_contig6128:3493..3598 | 1691683727.7710865-CDS-L-elsbetiae_contig6128:3493..3598 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6128 3494..3598 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6128.14690.1 >prot_L-elsbetiae_contig6128.14690.1 ID=prot_L-elsbetiae_contig6128.14690.1|Name=mRNA_L-elsbetiae_contig6128.14690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=231bp
MALSRSAALLISTLTSCAVKEVWGFLPASLTLTRCPTINNPAQGVNTATR
PAAAEPSYVVCLSSASPFEGVEHDNSEDDVDVVQRQAEQLEEMIRGSRGI
VVEAIEREWREEMLRVLSDEGERLCLESYEGYLDRGRGAIFVNVDMGLSS
SRDGHDTAPCHAVFRSLEEVVMERSSRVKPADQMEIIQRCQVYDPEAAFV
VVFGHKGMLGVQVMRPSLAPGELHRTRGAP* back to topmRNA from alignment at L-elsbetiae_contig6128:2235..4341+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig6128.14690.1 ID=mRNA_L-elsbetiae_contig6128.14690.1|Name=mRNA_L-elsbetiae_contig6128.14690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2107bp|location=Sequence derived from alignment at L-elsbetiae_contig6128:2235..4341+ (Laminarionema elsbetiae ELsaHSoW15)
ACGACAATGGCGCTCTCGAGGAGTGCAGCACTACTCATTTCGACGCTTAC
ATCATGTGCTGTGAAAGAAGTTTGGGGGTTTCTACCAGCTAGTCTGACGC
TTACGAGATGTCCAACCATCAACAATCCAGCACAAGGAGTGAACACTGCA
ACAAGGCCAGCAGCGGCGGAACCATCGTATGTCGTGTGCCTGTCAAGTGC
ATCGCCTTTCGAGGGGGTCGAGCACGACAATAGCGAGGACGATGTCGACG
TGGTTCAAAGGCAGGCCGAGCAGCTGGAGGAAATGATCCGTGGCAGCCGT
GGAATTGTGGTCGAGGCGATCGAACGAGAGTGGAGAGAAGAGATGCTTCG
AGTCTTGAGCGACGAGGGGGAGAGATTGTGTCTAGAATCCTATGAAGGCT
ACCTTGATCGTGGCCGCGGCGCCATCTTTGTGAGTCTCGTCACAGAAAAT
CGTATATTTTGGATTGTTCTCTTCCGGCCTGTGGTGTTGGACCGAAATAT
CATGGTGGCGCGTTTTGTATGTGTTCGGAGGCTGCGTACCGGACTGCAGC
ACGCACGCCGCGCCCGTCCGGTTAACTTGGTCTATTGGCAATGGCCATGG
CAACGACCCTGCACACGCTGCGCCCAGCGCCTTGACGCCGTCGATATATG
TGTGTCCCTATAAACCTTCGGCATCTGGTCAGTCTTCGTTCTGCCGGTTT
GCTGCGATTTCCACCCTTCATACGCATATGCACCTACATGTATCCTACAT
GAAGGAAGAAGTTGCGATGGGGTCGCAATTTTAAGATATTCTGCATTACA
TGCATGTAGTCTAGGTAGTAGTACGCACGTAAACGTTCACGGTTGGGGGT
TTTCTGTCCGCCGTGTGTTTTCGCGAAGGTAAACGTGGACATGGGGCTTA
GCAGCAGCCGCGATGGCCACGACACCGCCCCCTGCCATGCCGTGTTCCGC
TCTCTGGAGGAGGTGGTGATGGAGCGGTCTTCGAGGGTGAAGCCTGCTGA
CCAGATGGAGATCATCCAAAGATGTCAGGTCTACGACCCAGAGGTGAGTA
CTGCTGTATTTGGGGCAGTGTTTTGGCGGCGGGCGTGCTCTGGCAGCTAC
ATAATTTAGCTGTTGTTGGCCTCTGTTGTCCTCGTTCACGCACTTGGCTT
GCGTTTTTGTAATTCGAGAAAAGCGCCGACCCTGACTGAAGCAAACCGTC
CCTCCGTCCCCCGTCCCTCGCGTGGTTTCCTTTGATTGCTTTGCTCCGAT
ATTATAAAGGCGGCGTTCGTCGTGGTGTTCGGGCACAAGGGCATGCTCGG
GGTGCAAGTGATGCGACCGTCACTCGCGCCTGGGGAGTTACACCGCACTC
GCGGGGCCCCATAAACCTACCCCACCACCGCCGTTTGTATAGAAAGAATG
AGCACCGAAAGGAAGTTTCACGCAGATGTCGTGGTGATTTTGAAAGCGGT
GCGTACGCCATTACAATAGTACCTTAGTTGTCAGTGGGCTTGACAGAGAG
AGATACTGCGTGGCTGTTTGTCTGAAAAGCTGGTTGCTAGTGACCTTGGG
TGCACACGTACGGTGTAGGAGTTGACGCTTGCGATAGATAGATACATACA
TACGGCCATAGTGCCGTGGTGGGTACGTAAAAATCGGGAATCCGTTTCGT
TCACGGAGGAAGTCGGCGCGGTATATTGCGGTCTTACTTTGACTTGAGAG
ACAGGGGACAGCTGTGAGACCTGCAACAGGCGCCGCGTACCGGCAGTACG
CGGATAGCAGGCTCCCAAGAATCCCGTTCGGCCCCGGGTGATGTACTCCT
GATCGGTGTTGGTTTCTTTGTTTGGACGCACATCTGCGGGAGCCTTCTTT
TCCTCGATGCTTTGCCGACATTTTCTTTTAGGTCTGGAGCATGCAGGGCG
TTGTACCGCCTGCAGTGGTCTTGGCGCCGTGCTACATTAGGCGATCGCCG
CGGCAGGCAGATCATGCACGCGGATTGGGATTGGGCGGTTGAAACCACCC
CTGGCCAAATCTTCCCACGAAGCTTATTTCTATTTCGCAACTGAGAGAAC
CATTGTAGTCACATCTCTCCCATTTTTTGCTGTCGTTTGCCAAGCACACT
TTCCCAC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig6128:2235..4341+ >mRNA_L-elsbetiae_contig6128.14690.1 ID=mRNA_L-elsbetiae_contig6128.14690.1|Name=mRNA_L-elsbetiae_contig6128.14690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1386bp|location=Sequence derived from alignment at L-elsbetiae_contig6128:2235..4341+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCTCTCGAGGAGTGCAGCACTACTCATTTCGACGCTTACATCATG
TGCTGTGAAAGAAGTTTGGGGGTTTCTACCAGCTAGTCTGACGCTTACGA
GATGTCCAACCATCAACAATCCAGCACAAGGAGTGAACACTGCAACAAGG
CCAGCAGCGGCGGAACCATCGTATGTCGTGTGCCTGTCAAGTGCATCGCC
TTTCGAGGGGGTCGAGCACGACAATAGCGAGGACGATGTCGACGTGGTTC
AAAGGCAGGCCGAGCAGCTGGAGGAAATGATCCGTGGCAGCCGTGGAATT
GTGGTCGAGGCGATCGAACGAGAGTGGAGAGAAGAGATGCTTCGAGTCTT
GAGCGACGAGGGGGAGAGATTGTGTCTAGAATCCTATGAAGGCTACCTTG
ATCGTGGCCGCGGCGCCATCTTTATGGCGCTCTCGAGGAGTGCAGCACTA
CTCATTTCGACGCTTACATCATGTGCTGTGAAAGAAGTTTGGGGGTTTCT
ACCAGCTAGTCTGACGCTTACGAGATGTCCAACCATCAACAATCCAGCAC
AAGGAGTGAACACTGCAACAAGGCCAGCAGCGGCGGAACCATCGTATGTC
GTGTGCCTGTCAAGTGCATCGCCTTTCGAGGGGGTCGAGCACGACAATAG
CGAGGACGATGTCGACGTGGTTCAAAGGCAGGCCGAGCAGCTGGAGGAAA
TGATCCGTGGCAGCCGTGGAATTGTGGTCGAGGCGATCGAACGAGAGTGG
AGAGAAGAGATGCTTCGAGTCTTGAGCGACGAGGGGGAGAGATTGTGTCT
AGAATCCTATGAAGGCTACCTTGATCGTGGCCGCGGCGCCATCTTTGTAA
ACGTGGACATGGGGCTTAGCAGCAGCCGCGATGGCCACGACACCGCCCCC
TGCCATGCCGTGTTCCGCTCTCTGGAGGAGGTGGTGATGGAGCGGTCTTC
GAGGGTGAAGCCTGCTGACCAGATGGAGATCATCCAAAGATGTCAGGTCT
ACGACCCAGAGGTAAACGTGGACATGGGGCTTAGCAGCAGCCGCGATGGC
CACGACACCGCCCCCTGCCATGCCGTGTTCCGCTCTCTGGAGGAGGTGGT
GATGGAGCGGTCTTCGAGGGTGAAGCCTGCTGACCAGATGGAGATCATCC
AAAGATGTCAGGTCTACGACCCAGAGGCGGCGTTCGTCGTGGTGTTCGGG
CACAAGGGCATGCTCGGGGTGCAAGTGATGCGACCGTCACTCGCGCCTGG
GGAGTTACACCGCACTCGCGGGGCCCCATAAGCGGCGTTCGTCGTGGTGT
TCGGGCACAAGGGCATGCTCGGGGTGCAAGTGATGCGACCGTCACTCGCG
CCTGGGGAGTTACACCGCACTCGCGGGGCCCCATAA back to top
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