prot_L-elsbetiae_contig6128.14690.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6128.14690.1
Unique Nameprot_L-elsbetiae_contig6128.14690.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length231
Homology
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BLAST of mRNA_L-elsbetiae_contig6128.14690.1 vs. uniprot
Match: A0A6H5JX16_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JX16_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 2.020e-85
Identity = 148/232 (63.79%), Postives = 174/232 (75.00%), Query Frame = 0 
Query:    1 MALSRSAALLISTLTSCAVKEVWGFLPASLTLT-----RCPTINNPAQGVNTATRPAAAEPSYVVCLSSASPFEGVEHDNSEDDVDVVQRQAEQLEEMIRGSRGIVVEAIEREWREEMLRVLSDEGERLCLESYEGYLDRGRGAIFVNVDMGLSSSRDGHDTAPCHAVFRSLEEVVMERSSRVKPADQMEIIQRCQVYDPEAAFVVVFGHKGMLGVQVMRPSLAPGELHRTR 227
            M L  +A LL STL SC  +   G  P  + L      R   +++ +  + + +  A A       +  +SPFE VEH ++ED+VDV+QR+AEQLE MIRGSRGIVVEAIEREWREEMLRVL +EGE LC  +YEGYLDRGRG IFVNVDMGLSSS  GHD APCHAVF SLEEVV ERSSRVKPADQM+IIQRCQ YDPEA FV+VFG+KGMLGVQV+RPS+APGE+ R+R
Sbjct:    1 MQLCGTAVLLASTLASC--RAFTGVRPLVVPLAPAAHVRLRHVSSSSDPLGSGSSRARATGPIPNVVRFSSPFEDVEHGDNEDEVDVMQREAEQLEAMIRGSRGIVVEAIEREWREEMLRVLGEEGEMLCSLAYEGYLDRGRGVIFVNVDMGLSSSNKGHDGAPCHAVFCSLEEVVTERSSRVKPADQMQIIQRCQEYDPEAGFVLVFGYKGMLGVQVIRPSMAPGEVFRSR 230
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6128.14690.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JX16_9PHAE2.020e-8563.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 73..93
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..230
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..17
score: 5.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.607

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6128contigL-elsbetiae_contig6128:2241..3598 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6128.14690.1mRNA_L-elsbetiae_contig6128.14690.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6128 2235..4341 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6128.14690.1 ID=prot_L-elsbetiae_contig6128.14690.1|Name=mRNA_L-elsbetiae_contig6128.14690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=231bp
MALSRSAALLISTLTSCAVKEVWGFLPASLTLTRCPTINNPAQGVNTATR
PAAAEPSYVVCLSSASPFEGVEHDNSEDDVDVVQRQAEQLEEMIRGSRGI
VVEAIEREWREEMLRVLSDEGERLCLESYEGYLDRGRGAIFVNVDMGLSS
SRDGHDTAPCHAVFRSLEEVVMERSSRVKPADQMEIIQRCQVYDPEAAFV
VVFGHKGMLGVQVMRPSLAPGELHRTRGAP*
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