mRNA_L-elsbetiae_contig611.14664.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig611.14664.1 vs. uniprot
Match: D8LRA9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRA9_ECTSI) HSP 1 Score: 421 bits (1083), Expect = 3.490e-135 Identity = 324/455 (71.21%), Postives = 338/455 (74.29%), Query Frame = 1 Query: 1 QRGVGRGLAATKPAWMTSGSATSSVGGLNDRGTHESNSHDNGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-STMPAWMTHPDAPGGLQESGNSSGTGGRGGHRSTAEKSPPRFTRSSGPLPPEPTMANGGIAGXXXXXXXRGWTSNGGRHYXXXXXXXXXXXXXXXXXEPEKLPAVYSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKEGDTVYAKVIEVTDGAEPREQRIALSMKLVNQADGADLDPSNAEAETDVQRRKPMGG-DRAPVKLEAVFNTTCTKCGVQGHLSIDCFSRGGKKYDLVDEEDPRGASAMAANGG-GGGMRGVHREAPRDGVPAAGRGRGREATMPAWMTAAGLADKLRKKSHRK 1356 QRGVGRGLAATKPAWMTSGS S+GGLN RG S+SH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXX XXXX ST+PAWMTHP PGGLQES G RG R + +KSPPRF RS+GPLPPEPTMANGGI G XXXXX XXXXXXXXXXXXXXXXX PEKLP V+SVHKGEVVKTETFGAF+KLDGYRKHGLVHCSQMASYRVEDVTD+CK GDTVYAKVIEVTDGA+PREQRIALSMKLVNQADG DLDPSNAEAETD QR++P GG DRAPV+LEAVFNTTCTKCGV GHLSIDCFSRGGKKY+LVDEEDPR A GG G GMRGVHRE P G AG GRGR ATMPAWM GL DKL KKSHRK Sbjct: 2 QRGVGRGLAATKPAWMTSGSVAPSLGGLNGRGGPASSSHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRSDDRRNGGGRDTAARSGGRSNANDVASRAVQQAFAGGXXXNVPAAGRXXXXGSTIPAWMTHPGGPGGLQESDR----GDRGDGRPSKDKSPPRFARSAGPLPPEPTMANGGITGGRXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXPEKLPEVFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRKRPAGGGDRAPVQLEAVFNTTCTKCGVHGHLSIDCFSRGGKKYELVDEEDPRDNGRGGAGGGTGNGMRGVHREPPHGGGALAG-GRGRGATMPAWMNDLGLVDKLNKKSHRK 446
BLAST of mRNA_L-elsbetiae_contig611.14664.1 vs. uniprot
Match: A0A835YH79_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH79_9STRA) HSP 1 Score: 172 bits (436), Expect = 3.350e-42 Identity = 109/282 (38.65%), Postives = 143/282 (50.71%), Query Frame = 1 Query: 715 EKLPAVYSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKEGDTVYAK------------------------------------VIEVTDGAEPREQRIALSMKLVNQADGADLDPSNAEAETDVQRRKPMGGDR-------------APVKLEAVFNTTCTKCGVQG-------------------HLSIDCFSRGGKKYDLVDEEDPRGASAMAANGGGGGMRGVHREAPRDGVPAAGRGRGREATMPAWMTAAGLADKLRKKSHRK 1356 + LPA+YSVH GEV + FG FV G+RKHGLVH SQ+A YRVEDV D GD V+ K VI+V +GA PRE ++A+SMKLV+Q+ G DLDP+N EA+ + RR GG R P++L AVFNT C+KCG H+S+DCFSRGG+KY+LV E+ G A GGM+GV + P P+ GRG+ AT+P+WMT+ + K+ +K Sbjct: 283 DTLPALYSVHHGEVASVQDFGCFVSAPGHRKHGLVHKSQLAQYRVEDVADAVAVGDKVWVKYQXXXXXXXXXXXXXXXXXXKGGXXXXXXXXXXXXKVIDVQEGATPRESKVAMSMKLVDQSTGKDLDPTNEEAQDEAARRMGGGGXRXXXXXXXXXXAPKGPIELGAVFNTVCSKCGAXXXXXXXXXXXXXXXXXXXXXHMSVDCFSRGGQKYELVTEDLEGGEPA-------GGMKGVAKP-PDVPPPSVSMGRGKAATLPSWMTSGPAVEVDVPKAEKK 556
BLAST of mRNA_L-elsbetiae_contig611.14664.1 vs. uniprot
Match: UPI001ED8BBBA (nucleolar protein of 40 kDa-like n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8BBBA) HSP 1 Score: 150 bits (380), Expect = 1.540e-37 Identity = 78/150 (52.00%), Postives = 104/150 (69.33%), Query Frame = 1 Query: 730 VYSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKEGDTVYAKVIEVTDGAEPREQRIALSMKLVNQADGADLDPSNAEAETDVQRRKP-MGGDRAPVKLEAVFNTTCTKCGVQGHLSIDCF-SRGGKKYDLVDEED 1173 V ++ GEV +++GAFV++ G K GL+H SQ++S V+DV+D+ GD VY KVI VTDG +IALSMKLVNQ G DLDP+ + + D RRK + G R ++LEAVFNTTC+KCG +GH++ DCF S GGK Y+L+ EED Sbjct: 8 VNTIFIGEVATVQSYGAFVRIPGISKQGLIHRSQVSSAPVDDVSDVLNRGDRVYCKVISVTDG------KIALSMKLVNQGSGKDLDPNGVQLQKDELRRKTFVPGTRKKIELEAVFNTTCSKCGTRGHMARDCFKSPGGKIYELLPEED 151
BLAST of mRNA_L-elsbetiae_contig611.14664.1 vs. uniprot
Match: A0A1S3Q0U9_SALSA (nucleolar protein of 40 kDa n=11 Tax=Protacanthopterygii TaxID=41705 RepID=A0A1S3Q0U9_SALSA) HSP 1 Score: 149 bits (377), Expect = 4.080e-37 Identity = 77/153 (50.33%), Postives = 103/153 (67.32%), Query Frame = 1 Query: 721 LPAVYSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKEGDTVYAKVIEVTDGAEPREQRIALS--MKLVNQADGADLDPSNAEAETDVQRRKPM-GGDRAPVKLEAVFNTTCTKCGVQGHLSIDCFSRGGKKYDLVDEE 1170 LPA+YS+ KGEV +T+GAF+K+ GYRK GLVH S++++ RVE+V ++ G+ V+ KVI G E R+ ++ LS MK VNQ G DLDP+N AE D +RR+ G + LEAV NTTC KCG +GH + DCFS G +YDL+ EE Sbjct: 17 LPAMYSIVKGEVASVQTYGAFIKIPGYRKQGLVHISELSACRVENVAEVVDVGEQVWIKVI----GREMRDDKVKLSFSMKAVNQGTGKDLDPNNVIAEQDERRRRQFKDGTGRRITLEAVLNTTCKKCGCKGHFAKDCFSAPGLQYDLIPEE 165
BLAST of mRNA_L-elsbetiae_contig611.14664.1 vs. uniprot
Match: A0A1A7YY55_9TELE (Zinc finger, CCHC domain containing 17 n=2 Tax=Nothobranchiidae TaxID=405002 RepID=A0A1A7YY55_9TELE) HSP 1 Score: 147 bits (370), Expect = 6.380e-37 Identity = 79/155 (50.97%), Postives = 105/155 (67.74%), Query Frame = 1 Query: 721 LPAVYSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKEGDTVYAKVIEVTDGAEPREQRIALS--MKLVNQADGADLDPSNAEAETDVQRRKPM---GGDRAPVKLEAVFNTTCTKCGVQGHLSIDCFSRGGKKYDLVDEE 1170 LP +YS+ KGEVV +T+GAFV+L GYRK GLVH S+M++ RVE ++I G+ V+ KVI G E + +++ LS MK VNQ G DLDP+N +AE D +RR+ G +R + LEAV NTTC+KCG +GH + DCFS G +Y LV EE Sbjct: 17 LPPMYSIAKGEVVSVQTYGAFVRLPGYRKEGLVHVSEMSATRVESASEIVDVGEQVWIKVI----GREIQGEKVKLSFSMKAVNQGTGRDLDPNNVQAEQDARRRRQFRDQGSNR--ITLEAVLNTTCSKCGCKGHFTKDCFSAPGLQYALVPEE 165
BLAST of mRNA_L-elsbetiae_contig611.14664.1 vs. uniprot
Match: A0A3B4X9C6_SERLL (Zinc finger CCHC-type containing 17 n=2 Tax=Carangaria TaxID=1489904 RepID=A0A3B4X9C6_SERLL) HSP 1 Score: 147 bits (371), Expect = 6.400e-37 Identity = 80/156 (51.28%), Postives = 105/156 (67.31%), Query Frame = 1 Query: 721 LPAVYSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKEGDTVYAKVIEVTDGAEPREQRIALS--MKLVNQADGADLDPSNAEAETDVQRRKPMG---GDRAPVKLEAVFNTTCTKCGVQGHLSIDCFSRGGKKYDLVDEED 1173 LP +YS+ KGEVV +T+GAFV+L GY+K GLVH S+M++ RVE+ ++I G+ V+ KVI G E R ++ LS MK VNQ G DLDP+N AE D +RRK G+R + LEAV NTTC+KCG +GH + DCFS G +Y L+ EED Sbjct: 16 LPPLYSISKGEVVSVQTYGAFVRLPGYKKEGLVHVSEMSATRVENASEIVDVGEQVWIKVI----GKEIRGDKVKLSFSMKAVNQGTGRDLDPNNVMAEQDARRRKQFRDQTGNR--ITLEAVLNTTCSKCGCKGHFTKDCFSAPGLQYALLPEED 165
BLAST of mRNA_L-elsbetiae_contig611.14664.1 vs. uniprot
Match: UPI001404228E (nucleolar protein of 40 kDa isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001404228E) HSP 1 Score: 149 bits (377), Expect = 7.670e-37 Identity = 83/165 (50.30%), Postives = 107/165 (64.85%), Query Frame = 1 Query: 715 EKLPAVYSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKEGDTVYAKVIEVTDGAEPREQRIALSMKLVNQADGADLDPSNAEAETDVQRRKPM---GGDRAPVKLEAVFNTTCTKCGVQGHLSIDCFS-RGGKKYDLV--DEEDPRGASA 1191 E LP +YS+ +GEV +GAFVKL G RKHGLVH S M S RVE+ ++ G+ V+ KVI + D + + +IALSMK+VNQ G DLDPSN E D +R++ DR ++L AV +TTC+KCG +GH + DCFS GG KYDL+ D ED R ASA Sbjct: 2 EALPELYSIIQGEVASVREYGAFVKLPGLRKHGLVHVSHMCSTRVENPAEVVDVGEKVWCKVISLEDKDDGKGMKIALSMKVVNQGTGKDLDPSNLGLEQDERRKRKFRDFSADR--IQLGAVLSTTCSKCGCKGHFAKDCFSVPGGTKYDLIPDDVEDVRAASA 164
BLAST of mRNA_L-elsbetiae_contig611.14664.1 vs. uniprot
Match: A0A3P8WCJ4_CYNSE (Zinc finger CCHC-type containing 17 n=3 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8WCJ4_CYNSE) HSP 1 Score: 148 bits (373), Expect = 8.390e-37 Identity = 78/158 (49.37%), Postives = 103/158 (65.19%), Query Frame = 1 Query: 715 EKLPAVYSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKEGDTVYAKVIEVTDGAEPREQRIALS--MKLVNQADGADLDPSNAEAETDVQRRKPMGGDRA-PVKLEAVFNTTCTKCGVQGHLSIDCFSRGGKKYDLVDEEDPR 1179 E LP +YS+ KGEVV +T+GAFV+L GYRK GLVH S+M++ RVE ++I G+ V+ KVI G E R ++ +S MK VNQ G DLDP+N AE D +RR+ + LEAV NTTC+KCG +GH + DCFS G +Y L+ EED + Sbjct: 16 EGLPPIYSILKGEVVSVQTYGAFVRLPGYRKEGLVHVSEMSASRVEKASEIVDVGEQVWIKVI----GREIRGDKVKMSFSMKAVNQGTGRDLDPNNVNAEQDARRRRQFRDQTGNKITLEAVLNTTCSKCGCKGHFTKDCFSAPGLQYALLPEEDDK 169
BLAST of mRNA_L-elsbetiae_contig611.14664.1 vs. uniprot
Match: A0A7S2TF11_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2TF11_9EUKA) HSP 1 Score: 148 bits (374), Expect = 1.240e-36 Identity = 73/158 (46.20%), Postives = 105/158 (66.46%), Query Frame = 1 Query: 712 PEKLPAVYSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKEGDTVYAKVIEVT-DGAEPREQRIALSMKLVNQADGADLDPSNAEAETDVQRRKPMGGDRAPVKLEAVFNTTCTKCGVQGHLSIDCFSRGGKKYDLVDEEDPRG 1182 P++ P +YSVH+G VV +GAFVKLDG+ GLVH SQ+A+++V++ TD+ G V+ KV+ D + ++++LSMKLV+Q DG DLD SN EAE R + D ++L A++NT CTKCG GHL+ CF+ GKKYDL++++D G Sbjct: 112 PDEYPKMYSVHQGNVVSVRDYGAFVKLDGFYAQGLVHVSQLAAWKVDNPTDVVNVGQRVWVKVVACEPDPKKEGRKKVSLSMKLVSQEDGEDLDKSNIEAEQLTDRARYQQQDAKRIELGAIYNTICTKCGGHGHLATQCFT--GKKYDLIEDDDKDG 267
BLAST of mRNA_L-elsbetiae_contig611.14664.1 vs. uniprot
Match: A0A3B4XKM9_SERLL (Zinc finger CCHC-type containing 17 n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3B4XKM9_SERLL) HSP 1 Score: 147 bits (371), Expect = 1.540e-36 Identity = 80/156 (51.28%), Postives = 105/156 (67.31%), Query Frame = 1 Query: 721 LPAVYSVHKGEVVKTETFGAFVKLDGYRKHGLVHCSQMASYRVEDVTDICKEGDTVYAKVIEVTDGAEPREQRIALS--MKLVNQADGADLDPSNAEAETDVQRRKPMG---GDRAPVKLEAVFNTTCTKCGVQGHLSIDCFSRGGKKYDLVDEED 1173 LP +YS+ KGEVV +T+GAFV+L GY+K GLVH S+M++ RVE+ ++I G+ V+ KVI G E R ++ LS MK VNQ G DLDP+N AE D +RRK G+R + LEAV NTTC+KCG +GH + DCFS G +Y L+ EED Sbjct: 15 LPPLYSISKGEVVSVQTYGAFVRLPGYKKEGLVHVSEMSATRVENASEIVDVGEQVWIKVI----GKEIRGDKVKLSFSMKAVNQGTGRDLDPNNVMAEQDARRRKQFRDQTGNR--ITLEAVLNTTCSKCGCKGHFTKDCFSAPGLQYALLPEED 164 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig611.14664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig611.14664.1 >prot_L-elsbetiae_contig611.14664.1 ID=prot_L-elsbetiae_contig611.14664.1|Name=mRNA_L-elsbetiae_contig611.14664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=643bp MTSGSATSSVGGLNDRGTHESNSHDNGRSRKGRSRSRSRSRDRRGGGGGGback to top mRNA from alignment at L-elsbetiae_contig611:445..10478+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig611.14664.1 ID=mRNA_L-elsbetiae_contig611.14664.1|Name=mRNA_L-elsbetiae_contig611.14664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10034bp|location=Sequence derived from alignment at L-elsbetiae_contig611:445..10478+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig611:445..10478+ >mRNA_L-elsbetiae_contig611.14664.1 ID=mRNA_L-elsbetiae_contig611.14664.1|Name=mRNA_L-elsbetiae_contig611.14664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3858bp|location=Sequence derived from alignment at L-elsbetiae_contig611:445..10478+ (Laminarionema elsbetiae ELsaHSoW15)back to top |