mRNA_L-elsbetiae_contig6107.14661.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6107.14661.1
Unique NamemRNA_L-elsbetiae_contig6107.14661.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6107.14661.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 4.590e-59
Identity = 149/319 (46.71%), Postives = 196/319 (61.44%), Query Frame = 2
Query:  242 ASSGCGGRSEVMAALIEAGANVDSRARDGSTPLYTAAGGGHLNAVRKLLRAKADPLLMRSLPSG-ETLVPLDVAAINGYSKVVRELIQQFGIEGCAGASGGVVALGAAARESHVHIMFMLTNAGVVDTGLALVSAAEWSIPVAAAAAAGVPDRLSGIRQHPQSER------LHGLGAPLLPS------PRVVRLLVDAGADTTSDVRVTGESGVVHNIGTPLAHTNALLGHKKIRGLDATEEQLHRLEALRRLLLRVEAACAVSWLWPGDVPSVAKA-AGDTGKTATTTPANGTQLMILMLPILRRRGRGALLAPLVRW 1156
            A +GC   +  + AL++AG+N+++R  DG+TPLYTAA  G++ AV  LL AKADPLL  +  SG E  +PLDVAA NG+ +VV ELI+Q GI+GC G+SGG  AL  AA  S + IM +LT+AGVVDTGLALV AA +         A +   L   R    ++R      L+G+G   L        PRVV+LLV+AGADTTS V +  + G      TPL  T  LLG +  + L  T E+ ++LE +RRLLLR EA  AVSWLWP D P++  A A  TG+T  T+ A  T  ++LM+   R RGR  LLA L+R+
Sbjct:  123 AETGC---AASVTALLKAGSNINTRRSDGATPLYTAAWNGNVVAVWLLLLAKADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDTGLALVVAAGYG------GEAPLKFLLEQARGRKSTDRAAYMNTLNGVGLTSLLDGIQRCRPRVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLLGGRSAKPL--TMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATAKGTGRTTATSTA-ATPFIMLMIGR-RTRGRKGLLAALLRY 428          
BLAST of mRNA_L-elsbetiae_contig6107.14661.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 2.510e-57
Identity = 146/300 (48.67%), Postives = 184/300 (61.33%), Query Frame = 2
Query:  302 NVDSRARDGSTPLYTAAGGGHLNAVRKLLRAKADPLLMRSL-PSGETLVPLDVAAINGYSKVVRELIQQFGIEGCAGASGGVVALGAAARESHVHIMFMLTNAGVVDTGLALVSAAEWS------IPVAAAAAAGVPDRLSGIRQHPQSERLHGLGAPLLPS-----PRVVRLLVDAGADTTSDVRVTGESGVVHNIGTPLAHT-NALLGHKKIRGLD-ATEEQLHRLEALRRLLLRVEAACAVSWLWPGDVPSVAKAAGDTGKTATTTPANGTQLMILMLPILRR-RGRGALLAPLVRW 1156
            N++SR  DG+TPLYTAA  G+++A R LL AKADPLL     PSG T +PLD AA NG+ +VV ELI+Q GI+GC G+SGGV AL  AA+  +++IM +LTNAGVVDTGLALV AA +         +  A A    D  + +     + R  G   PLL       PRVVRLLV+AGADTTS V V  + G      TPL  T N +    K+ G   A+ EQLH+LEA+RRLLLRVEA  AVSWLWP D+ ++ +AA    +    T A  T + + ML   RR RGR   LA L+R+
Sbjct:  140 NLNSRRSDGATPLYTAAWKGNVDAARLLLLAKADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQARARKTMDEAAYV-----NTRDRGGVTPLLWGIQHYRPRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAA---RGTDRTTAISTAVTLPMLVTRRRARGRKVPLAALLRY 431          
BLAST of mRNA_L-elsbetiae_contig6107.14661.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 2.200e-55
Identity = 138/299 (46.15%), Postives = 176/299 (58.86%), Query Frame = 2
Query:  275 MAALIEAGANVDSRARDGSTPLYTAAGGGHLNAVRKLLRAKADPLLMRSLPSGETL-VPLDVAAINGYSKVVRELIQQFGIEGCAGASGGVVALGAAARESHVHIMFMLTNAGVVDTGLALVSAAEWSIPVAAAAAAGVPDRLSG---IRQHPQSERLHGLGA-PLLPSPRVVRLLVDAGADTTSDVRVTGESGVVHNIGTPLAHTNALLGHKKIRGLDATEEQLHRLEALRRLLLRVEAACAVSWLWPGDVPSVAKAAGDTGKTATTTPANGTQLMILMLPILRRRGRGALLAPLVRW 1156
            M  L+EAGAN++SR  DG+TPL+ AA  G+++AVR LL AK DPLL   L + E   +PLDVAA  G+ +VV ELI+Q GI GC G+SGGV AL  AAR  H+ ++ +LTNAGVVDTGLA         P+  +  AG  +   G   + +HPQ  R   +        PRVVRLLV+AGADTTS V + G  G   NI TP+  T  LL       L  TEEQL+ LEA+ RLLLRVEA  AVSWLW  D+ +   +        T+    GT L++ M    R + R   LA L+R+
Sbjct:   33 MTTLLEAGANLNSRRFDGATPLFLAAWEGNVDAVRLLLLAKVDPLLTPHLGTSERASLPLDVAAGLGHLEVVNELIRQVGIGGCGGSSGGVRALQQAARNKHLDMLTVLTNAGVVDTGLARGRRIWRRGPLEVSVGAGKGEENHGWTCVCEHPQRCRFDAIACWHQRCRPRVVRLLVEAGADTTSTVPIDGLPGT-DNI-TPMGLTMLLLHDLGTEPL--TEEQLNALEAIHRLLLRVEALHAVSWLWSSDICNCTYSTAQGTDRTTSKSTAGTPLVLTMRQRARSKEREVPLAALLRY 327          
BLAST of mRNA_L-elsbetiae_contig6107.14661.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 9.350e-49
Identity = 137/310 (44.19%), Postives = 174/310 (56.13%), Query Frame = 2
Query:  302 NVDSRARDGSTPLYTAAGGGHLNAVRKLLRAKADPLLMRSLPSGETL-VPLDVAAINGYSKVVRELIQQFGIEGCAGASGGVVALGAAARESHVHIMFMLTNAGVVDTGLALVSAAEWSIPVAAAAAAGVPDRLSGIRQHPQSERLHGL-GA-----------PLL--------PSPRVVRLLVDAGADTTSDVRVTG-ESGVVHNIGTPLAHTNALLGHKKIR-GLDATEEQLHRLEALRRLLLRVEAACAVSWLWPGDVPSVAKAAGDTGKTATTTPANGTQLMILMLPILRRRG--RGALLAPLVRW 1156
            N D +  DGST L+ AA  G +  +R+LLR  A+PLL+++ P G T  VPLD+AA +G++ VVRELIQ+ GIEGC   S G  AL  AA   H+ IM +LT AGVVDTG AL  AA            G    +  + +H   E   G+ GA           PL+         +PR+VR+LVDAGADTTS V+V   + GVV N  TPLA T   L  K +  G  AT+E L RLEA+ RLLLRV+A  AVSWLWP   P +       G+   T P      + LMLPIL+RR   R  L+A L+R+
Sbjct:  232 NPDCQLPDGSTALHIAAEEGQVAVMRELLRGNANPLLIQTSPPGNTTTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGM----------GHEASVKFLLRHRHKEGGCGVEGAYLNARDVNGYTPLVVCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFN-DTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFI-------GRATETDPEPPLPALKLMLPILKRRTKRRCGLVATLLRY 523          
BLAST of mRNA_L-elsbetiae_contig6107.14661.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 5.380e-45
Identity = 132/300 (44.00%), Postives = 162/300 (54.00%), Query Frame = 2
Query:  302 NVDSRAR-DGSTPLYTAAGGGHLNAVRKLLRAKADPLLMRS-LPSGETLVPLDVAAINGYSKVVRELIQQFGIEGCAGASGGVVALGAAARESHVHIMFMLTNAGVVDTGLALVSAAEWSIPVAAAAAAGVPDRLSGIRQHPQSERLHGLGA-----------PLLPS------------PRVVRLLVDAGADTTSDVRVTGESGVVHNIGTPLAHTNALLGHKKIRGLDATEEQLHRLEALRRLLLRVEAACAVSWLWPGDVPSVAKAAGDTGKTATTTPANGTQLMILMLPILRRRGR 1126
            NVD R   DG TPL+ A   G L A R+LLRA A+PL+ R+ LP   TL+PLD AA NG   V+RELIQ+ GIEGC G S G VAL  A     V  M +LT+AGVVDTG AL      +I       A V   L    +H      +G GA           PLL S            PRV RLLV+AGADTT+++R T   GVV    TPL  T  +L  KK+ G   ++++L RLE +RRLLL+VEA  A SWLWP       +   +  +  T T A   +L   +LPILRRR R
Sbjct:  125 NVDIRTPVDGETPLFRAMTEGQLEATRELLRANANPLITRAPLP---TLLPLDSAARNGNLLVMRELIQRVGIEGCGGQSRGEVALLMAGEGRRVAAMALLTHAGVVDTGQAL------TISAGLGREASVKYLLQNHAKH------YGPGAYVNVRDRNGTTPLLSSIYVCGVDEQSSFPRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSGDGGRRPDNAAEVTTATNAAAPKLG-RVLPILRRRAR 408          
BLAST of mRNA_L-elsbetiae_contig6107.14661.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 1.140e-43
Identity = 115/258 (44.57%), Postives = 140/258 (54.26%), Query Frame = 2
Query:  389 RAKADPLLMRSLPSGETLVPLDVAAINGYSKVVRELIQQFGIEGCAGASGGVVALGAAARESHVHIMFMLTNAGVVDTGLALVSAAEWS----IPVAAAAAAGVPDRLSGIRQHPQSERLH-------GLGAPLLPSPRVVRLLVDAGADTTSDVRVTGESGVVHNIGTPLAHTNALLGHKKIRGLDATEEQLHRLEALRRLLLRVEAACAVSWLWPGDVPSVAKAAGDTGKTATTTPANGTQLMILMLPILRRRGRG 1129
            RAKA+PLL R   + + L PLD AA NG   VV EL+Q+FGI GC G +GGV AL  AA + H+ +M  LT AGVVDTG+ALV A  +     +        G P   S     P+             +G     SP+VVRLLVDAGADTTS VR T + G +  + TPL+     L  K        +E L RLE +RRLLLRVEA  A SWLW   VP V   AG T  T T + +     +  +LPILRRR RG
Sbjct:  168 RAKANPLLTRVNLAWQHL-PLDTAAQNGRLGVVLELLQRFGIRGCGGGTGGVTALQLAAMKPHMDVMLALTTAGVVDTGIALVKATSFGHMDVVKFLLQQQNGTPSEKSAYVSRPRDPCGRTPLICNIDVGLNQSCSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATETESSSTTAPQLRTVLPILRRRARG 424          
BLAST of mRNA_L-elsbetiae_contig6107.14661.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 3.770e-43
Identity = 129/272 (47.43%), Postives = 159/272 (58.46%), Query Frame = 2
Query:  383 LLRAKADPLLMRSLPSGETLVPLDVAAINGYSKVVRELIQQFGIEGCAGASGGVVALGAAARESHVHIMFMLTNAG-VVDTGLALVSAAEWSIPVA---------AAAAAGVPDRLSGIRQHPQSERLHGLGAPLLPSPRVVRLLVDAGADTTSDVRVTGESGVVHNIG-TPLAHTNALLGHKKIRGLDATEEQLHRLEALRRLLLRVEAACAVSWLWP-GDVPSVAKAAGDTGKTATTTPANGTQLMILMLPILRRRG--RGALLAPLVRW 1156
            LLRAKA+PLL    P G + VPL++AA++G   V RE+I+Q GI GC G SGGV AL  AA E H+  M +L +AG VVDTG AL+ AAE    VA         A A A V        + P    +  +GA  L SP++VRLLVDAGA+TT  V VT  +        TPLA T  LL   ++ G  AT+EQL RL+  R LL R EA  AVSWLW  G+ P +A+AAGDT KT T + A  T L   M P+LRR+   RG LL  L R+
Sbjct:  164 LLRAKANPLLCSHTPMGVSYVPLEMAALHGNPDVAREMIRQVGIRGCGGPSGGVEALRQAADEEHLEFMAVLLDAGGVVDTGPALILAAENGRAVAVKFLLRRRQADADAYVNGTRDPYGRTPVMCAVD-VGAGRLCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDT-KTETASTAVATPLRA-MSPMLRRKPGTRGVLLKTLFRY 432          
BLAST of mRNA_L-elsbetiae_contig6107.14661.1 vs. uniprot
Match: A0A6H5JWZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ8_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 3.550e-38
Identity = 122/305 (40.00%), Postives = 161/305 (52.79%), Query Frame = 2
Query:  242 ASSGCGGRSEVMAALIEAGANVDSRARDGSTPLYTAAGGGHLNAVRKLLRAKADPLLMRSLPSGETLVPLDVAAINGYSKVVRELIQQFGIEGCAGASGGVVALGAAARESHVHIMFMLTNAGVVDTGLALVSAAEWSIPVAAAAAAGVPDRLSGIRQHPQSERLHGLGAPLLPSPRVVRLLVDAGADTTSDVRVTGESGVVHNIGTPLAHTNALLGHKKIRGLDATEEQLHRLEALRRLLLRVEAACAVSWLWPGDVPSVAKAAGDTGKTATTTPANGTQLMILMLPILRRRGRGALLAPLVRW 1156
            A+S  G R   +AA I   A + +  +    P+ TAA  GH+ AVR  LRAKA+ LL+R   S ++ VPLD AA  G S VVREL+ Q GI+GC G S G  AL  AA+E  V  M +L  AG+VDTG+AL+ A + ++      +     R S  + +P    +   G      PR+VR++VDA ADTTS VRV  + G++    TPL             GL       H+L A+ RLLLRVEA  A SWLW  D P +A  A  T +T    PA    L +L L       R ALL+ ++RW
Sbjct:   58 ATSSNGSRPRHLAADIGHAAVIKALRQ---APISTAA--GHVEAVRAFLRAKANSLLIRLNASRDSFVPLDAAAGKGRSLVVRELLGQLGIDGCGGPSRGPHALYHAAKEQFVDTMAVLATAGMVDTGIALIGAIKENLE----GSIKFLLRQSSCKGNPPVPTIEDEGGRWC-FPRIVRMIVDAVADTTSAVRVL-KLGLLPVKETPL-------------GL------AHKLSAVHRLLLRVEALHAASWLWVSDAPDIAHTAEVTKRTKVIPPARSRMLPVLGLST----RRNALLSAVLRW 328          
BLAST of mRNA_L-elsbetiae_contig6107.14661.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 4.850e-35
Identity = 118/262 (45.04%), Postives = 136/262 (51.91%), Query Frame = 2
Query:  404 PLLMRSLPSGETLVPLDVAAINGYSKVVRELIQQFGIEGCAGASGGVVALGAAARESHVHIMFMLTNAGVVDTGLALVSAAEWSIPVAAA---AAAGVPDRLSGIRQHPQSERLHGLGAPLLP-------SPRVVRLLVDAGADTTSDVRVTGESGVVHNIGTPLAHTNALLGHKKIRGLDATEEQLHRLEALRRLLLRVEAACAVSWLWPGDVPSVAKAAGDTGKTATTTPANGTQLMILMLPILRRRG--RGALLAPLVR 1153
            PLL   + SG T VPLD AA+NG+  V REL+Q+FGI GCAGAS GV ALG AA + H+ +M +L +AGVVDTG ALV+        A        G     +     P+  R H    PLL        SPRVVRLLVDAGAD T  VRV    G      TPL      L  K +    AT +QL  L A RRLLL+VE   A SWLW G     A A G   K A T   NG  L    LPI+ RR   RGA L  + R
Sbjct:  170 PLLPTRMSSGNTFVPLDGAALNGHLAVARELVQRFGIRGCAGASAGVDALGQAAVDQHLDVMALLCDAGVVDTGNALVATVFLGRERALKFLLEQKGEGTARTTYASTPRDGRGH---TPLLSAVTTGPCSPRVVRLLVDAGADATLAVRVPDGFGRSTKY-TPLDCATRCLAEKVVDEDFATAQQLRNLRASRRLLLQVEVVHATSWLWGGHAGCPA-APGK--KRAQTESTNGKPLKS-RLPIMWRRSARRGAALPGVFR 423          
BLAST of mRNA_L-elsbetiae_contig6107.14661.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 2.360e-34
Identity = 121/270 (44.81%), Postives = 155/270 (57.41%), Query Frame = 2
Query:  386 LRAKADPLLM-RSLPSGETLVPLDVAAINGYSKVVRELIQQFGIEGCAGASGGVVALGAAARESHVHIMFMLTNAGVVD-TGLALVSAAEWSIPVAAAAAAGVPDRLSGIRQHPQSERLH------GLGAPLLP---------SPRVVRLLVDAGADTTSDVRVTGE-SGVVHNIGTPLAHTNALLGHKKIRGLDATEEQLHRLEALRRLLLRVEAACAVSWLWPGDVPSVAKAAGDTGKTATTTPANGTQLMILMLPILRRR-GRGALL 1138
            L AKA+PLL   S  SG + VPL+VAA  G S VV EL+++FGI  C G SGG+ AL  AA    V IM ML +AGVVD  GLAL++A      V +   A V   L    +  Q+  ++      GL A L           +PR+ R LVDAGADTTS V++  + S    N+ TPL + N     +      AT+EQL RLEA RR+LLRV A  AVSW+WP D P +A+ A ++ +TA  +P   TQL  + LP+LRRR GR ALL
Sbjct:  138 LHAKANPLLTWSSESSGRSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAAVYGQVDIMSMLMDAGVVDPVGLALLAA------VGSGKEAAVGFLLRQQEERWQTSYVNIARDDDGLTALLWSFRGNKNKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNV-TPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPA-NSPRTAKHSP---TQLTTV-LPVLRRRAGRRALL 395          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6107.14661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQV0_9PHAE4.590e-5946.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJA9_9PHAE2.510e-5748.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXY7_ECTSI2.200e-5546.15EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FT11_ECTSI9.350e-4944.19EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LJF9_ECTSI5.380e-4544.00EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FVK3_ECTSI1.140e-4344.57EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G1H7_ECTSI3.770e-4347.43EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
A0A6H5JWZ8_9PHAE3.550e-3840.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL76_ECTSI4.850e-3545.04EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FVU3_ECTSI2.360e-3444.81EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6107contigL-elsbetiae_contig6107:10072..11278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.0
Seed ortholog evalue7.3e-48
Seed eggNOG ortholog2880.D7FXY7
KEGG koko:K10334
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons3
Model size1156
Cds size1029
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6107.14661.1prot_L-elsbetiae_contig6107.14661.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6107 10199..11278 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816668.1956909-UTR-L-elsbetiae_contig6107:10071..101981622816668.1956909-UTR-L-elsbetiae_contig6107:10071..10198Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6107 10072..10198 +
1691683726.1581557-UTR-L-elsbetiae_contig6107:10071..101981691683726.1581557-UTR-L-elsbetiae_contig6107:10071..10198Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6107 10072..10198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816668.2077816-CDS-L-elsbetiae_contig6107:10198..107271622816668.2077816-CDS-L-elsbetiae_contig6107:10198..10727Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6107 10199..10727 +
1691683726.1728952-CDS-L-elsbetiae_contig6107:10198..107271691683726.1728952-CDS-L-elsbetiae_contig6107:10198..10727Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6107 10199..10727 +
1622816668.2181-CDS-L-elsbetiae_contig6107:10744..108331622816668.2181-CDS-L-elsbetiae_contig6107:10744..10833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6107 10745..10833 +
1691683726.1842563-CDS-L-elsbetiae_contig6107:10744..108331691683726.1842563-CDS-L-elsbetiae_contig6107:10744..10833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6107 10745..10833 +
1622816668.2286525-CDS-L-elsbetiae_contig6107:10867..112781622816668.2286525-CDS-L-elsbetiae_contig6107:10867..11278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6107 10868..11278 +
1691683726.193857-CDS-L-elsbetiae_contig6107:10867..112781691683726.193857-CDS-L-elsbetiae_contig6107:10867..11278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6107 10868..11278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6107.14661.1

>prot_L-elsbetiae_contig6107.14661.1 ID=prot_L-elsbetiae_contig6107.14661.1|Name=mRNA_L-elsbetiae_contig6107.14661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=343bp
MLAGNISCIRSTRTPRRDHRSGQGWRRSGSKELRRWHTASSGCGGRSEVM
AALIEAGANVDSRARDGSTPLYTAAGGGHLNAVRKLLRAKADPLLMRSLP
SGETLVPLDVAAINGYSKVVRELIQQFGIEGCAGASGGVVALGAAARESH
VHIMFMLTNAGVVDTGLALVSAAEWSIPVAAAAAAGVPDRLSGIRQHPQS
ERLHGLGAPLLPSPRVVRLLVDAGADTTSDVRVTGESGVVHNIGTPLAHT
NALLGHKKIRGLDATEEQLHRLEALRRLLLRVEAACAVSWLWPGDVPSVA
KAAGDTGKTATTTPANGTQLMILMLPILRRRGRGALLAPLVRW
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mRNA from alignment at L-elsbetiae_contig6107:10072..11278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6107.14661.1 ID=mRNA_L-elsbetiae_contig6107.14661.1|Name=mRNA_L-elsbetiae_contig6107.14661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1207bp|location=Sequence derived from alignment at L-elsbetiae_contig6107:10072..11278+ (Laminarionema elsbetiae ELsaHSoW15)
TAGCGCTCGTTCGGTCTTCCACCCTCCCAACGTCATAATTTCGTCTACGC GGTGCCCGCCAGGGACTCGCCAACCCACTCAAAAGAGTGCATGGTAATGT GAGTCGGAAGGCCGGCTTTTCTCGGGTATGCTCGCAGGTAATATTTCATG TATCCGCTCGACAAGGACACCTCGCCGTGACCATCGATCTGGTCAGGGCT GGCGCAGATCTGGAAGCAAGGAACTCCGCCGGTGGCACACCGCTTCATCA GGCTGCGGCGGGCGCTCAGAGGTGATGGCAGCACTGATCGAGGCAGGCGC GAATGTCGACAGCCGTGCTAGGGATGGAAGCACACCGCTCTATACGGCGG CCGGTGGAGGACATTTGAACGCTGTCAGGAAGCTCCTTCGTGCCAAAGCG GATCCTTTGCTAATGAGAAGCCTGCCATCGGGGGAGACTCTTGTCCCATT GGACGTGGCGGCGATAAATGGTTACTCGAAGGTCGTACGCGAGCTGATCC AGCAGTTCGGGATCGAAGGTTGTGCTGGTGCAAGCGGTGGTGTCGTGGCC CTGGGTGCGGCTGCGCGGGAATCGCATGTGCACATCATGTTCATGCTGAC GAACGCCGGAGTGGTGGATACGGGACTAGCCCTGGTCTCCGCAGCAGAGT GGTCCAGTGAGGCGGGGGTGAAGTTCCTGTTGCAGCAGCGGCAGCGGCAG GCGTCCCCGACAGGCTTAGTGGGATACGTCAACACCCGCAATCAGAACGG CTGCACGGTCTTGTTGCGTAGCATGGACTTTAGCGTCGAAGTCGAGGGCG CGCCCCTGCTACCTTCCCCGAGAGTGGTGCGGTTGCTTGTCGACGCCGGA GCAGATACAACTTCAGACGTTCGAGTCACGGGTGAATCAGGCGTTGTTCA CAACATCGGCACGCCGCTAGCTCATACCAATGCACTCCTCGGCCACAAGA AAATACGAGGATTAGACGCGACAGAGGAGCAGCTGCATAGGCTGGAGGCA CTCCGCCGCTTGCTTCTGCGGGTAGAGGCAGCGTGTGCAGTTTCTTGGCT GTGGCCCGGCGATGTCCCCTCTGTCGCCAAGGCTGCAGGGGATACAGGCA AGACCGCCACGACGACTCCGGCTAATGGCACGCAACTGATGATATTGATG CTGCCGATTCTGAGGCGCCGAGGTCGTGGTGCGCTTTTGGCACCTCTGGT CAGGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6107:10072..11278+

>mRNA_L-elsbetiae_contig6107.14661.1 ID=mRNA_L-elsbetiae_contig6107.14661.1|Name=mRNA_L-elsbetiae_contig6107.14661.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2058bp|location=Sequence derived from alignment at L-elsbetiae_contig6107:10072..11278+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCGCAGGTAATATTTCATGTATCCGCTCGACAAGGACACCTCGCCG
TGACCATCGATCTGGTCAGGGCTGGCGCAGATCTGGAAGCAAGGAACTCC
GCCGGTGGCACACCGCTTCATCAGGCTGCGGCGGGCGCTCAGAGGTGATG
GCAGCACTGATCGAGGCAGGCGCGAATGTCGACAGCCGTGCTAGGGATGG
AAGCACACCGCTCTATACGGCGGCCGGTGGAGGACATTTGAACGCTGTCA
GGAAGCTCCTTCGTGCCAAAGCGGATCCTTTGCTAATGAGAAGCCTGCCA
TCGGGGGAGACTCTTGTCCCATTGGACGTGGCGGCGATAAATGGTTACTC
GAAGGTCGTACGCGAGCTGATCCAGCAGTTCGGGATCGAAGGTTGTGCTG
GTGCAAGCGGTGGTGTCGTGGCCCTGGGTGCGGCTGCGCGGGAATCGCAT
GTGCACATCATGTTCATGCTGACGAACGCCGGAGTGGTGGATACGGGACT
AGCCCTGGTCTCCGCAGCAGAGTGGTCCAATGCTCGCAGGTAATATTTCA
TGTATCCGCTCGACAAGGACACCTCGCCGTGACCATCGATCTGGTCAGGG
CTGGCGCAGATCTGGAAGCAAGGAACTCCGCCGGTGGCACACCGCTTCAT
CAGGCTGCGGCGGGCGCTCAGAGGTGATGGCAGCACTGATCGAGGCAGGC
GCGAATGTCGACAGCCGTGCTAGGGATGGAAGCACACCGCTCTATACGGC
GGCCGGTGGAGGACATTTGAACGCTGTCAGGAAGCTCCTTCGTGCCAAAG
CGGATCCTTTGCTAATGAGAAGCCTGCCATCGGGGGAGACTCTTGTCCCA
TTGGACGTGGCGGCGATAAATGGTTACTCGAAGGTCGTACGCGAGCTGAT
CCAGCAGTTCGGGATCGAAGGTTGTGCTGGTGCAAGCGGTGGTGTCGTGG
CCCTGGGTGCGGCTGCGCGGGAATCGCATGTGCACATCATGTTCATGCTG
ACGAACGCCGGAGTGGTGGATACGGGACTAGCCCTGGTCTCCGCAGCAGA
GTGGTCCATTCCTGTTGCAGCAGCGGCAGCGGCAGGCGTCCCCGACAGGC
TTAGTGGGATACGTCAACACCCGCAATCAGAACGGCTGCACGGTCTTTTC
CTGTTGCAGCAGCGGCAGCGGCAGGCGTCCCCGACAGGCTTAGTGGGATA
CGTCAACACCCGCAATCAGAACGGCTGCACGGTCTTGGCGCGCCCCTGCT
ACCTTCCCCGAGAGTGGTGCGGTTGCTTGTCGACGCCGGAGCAGATACAA
CTTCAGACGTTCGAGTCACGGGTGAATCAGGCGTTGTTCACAACATCGGC
ACGCCGCTAGCTCATACCAATGCACTCCTCGGCCACAAGAAAATACGAGG
ATTAGACGCGACAGAGGAGCAGCTGCATAGGCTGGAGGCACTCCGCCGCT
TGCTTCTGCGGGTAGAGGCAGCGTGTGCAGTTTCTTGGCTGTGGCCCGGC
GATGTCCCCTCTGTCGCCAAGGCTGCAGGGGATACAGGCAAGACCGCCAC
GACGACTCCGGCTAATGGCACGCAACTGATGATATTGATGCTGCCGATTC
TGAGGCGCCGAGGTCGTGGTGCGCTTTTGGCACCTCTGGTCAGGTGGGGC
GCGCCCCTGCTACCTTCCCCGAGAGTGGTGCGGTTGCTTGTCGACGCCGG
AGCAGATACAACTTCAGACGTTCGAGTCACGGGTGAATCAGGCGTTGTTC
ACAACATCGGCACGCCGCTAGCTCATACCAATGCACTCCTCGGCCACAAG
AAAATACGAGGATTAGACGCGACAGAGGAGCAGCTGCATAGGCTGGAGGC
ACTCCGCCGCTTGCTTCTGCGGGTAGAGGCAGCGTGTGCAGTTTCTTGGC
TGTGGCCCGGCGATGTCCCCTCTGTCGCCAAGGCTGCAGGGGATACAGGC
AAGACCGCCACGACGACTCCGGCTAATGGCACGCAACTGATGATATTGAT
GCTGCCGATTCTGAGGCGCCGAGGTCGTGGTGCGCTTTTGGCACCTCTGG
TCAGGTGG
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