mRNA_L-elsbetiae_contig6069.14606.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6069.14606.1 vs. uniprot
Match: D8LGM9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM9_ECTSI) HSP 1 Score: 316 bits (809), Expect = 7.460e-102 Identity = 286/328 (87.20%), Postives = 307/328 (93.60%), Query Frame = 2 Query: 26 LQEVVCALISSGIALRHLSMASNDISDAGVGSLARLLDDEPPSYCCVLSSLDLRGNSIGSKGCKVLTEHLRKNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTAILAVLREGNNTVRELSIGSQLLRSREEVATCHVARMLETPPCMLRSLDLSRCGMGDEGAHILRGALMGHPTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDALAEGMECNASVERLFVWGNHFGQASLRRFGNLNGGRFALVGVFIDVQPFVVDGVFHAAESFE 1009 ++++V A+ISSG+A+R++S+ASNDI DAGVGSLARLLDDEPPSY VLSSLDLRGNSIGSKGC++LTE LR+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FTA+LAVLREGNNTVRELSIGSQLLRSREEVA CHV+R LETPP MLR LDLS CG+GDEGA++LRGAL GHPTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDALAEGMECNASVERLFVWGNHFGQASL+RFG L GGRFALVGVF+DVQPFVVDGV+HAAE FE Sbjct: 49 VEKIVGAVISSGLAIRNISVASNDIGDAGVGSLARLLDDEPPSYSSVLSSLDLRGNSIGSKGCQLLTERLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEAGFTAVLAVLREGNNTVRELSIGSQLLRSREEVAACHVSRTLETPPYMLRLLDLSGCGIGDEGAYVLRGALTGHPTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDALAEGMECNASVERLFVWGNHFGQASLKRFGGLGGGRFALVGVFLDVQPFVVDGVYHAAEKFE 376
BLAST of mRNA_L-elsbetiae_contig6069.14606.1 vs. uniprot
Match: A0A8C1MTF0_CYPCA (NACHT domain-containing protein n=4 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1MTF0_CYPCA) HSP 1 Score: 59.3 bits (142), Expect = 9.540e-6 Identity = 54/194 (27.84%), Postives = 75/194 (38.66%), Query Frame = 2 Query: 38 VCALISSGIA-----LRHLSMASNDISDAGVGSLARLLDDEPPSYCCVLSSLDLRGNSIGSKGCKVLTEHLRKNATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTAILA-VLREGNNTVRELSIGSQLLRSREEVATCHVARMLETPPCMLRSLDLSRCGMGDEGAHILRGALMGHPT 601 VCA ++S + LR+L+++ N + + GV LA L+D C L L LR + +GC LT LR N T A LA LR + +REL + L+ + C LE P C L L+LS CG+ DEG L AL +P+ Sbjct: 902 VCAALASALRSNPEHLRYLNLSGNKLGNFGVYELASGLED------CKLEKLALRYCGVTDEGCAALTSALRSNPTHLRELDLSGNKLGDSVMLLSDVLQNPHCNLKKLWLWDCGVTDEGCADLASALRSNPSPLRELDLSRNKLQDLDVKLLCAA---LEDPQCKLEILELSYCGITDEGCAALASALRSNPS 1086 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6069.14606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6069.14606.1 >prot_L-elsbetiae_contig6069.14606.1 ID=prot_L-elsbetiae_contig6069.14606.1|Name=mRNA_L-elsbetiae_contig6069.14606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=310bp MASNDISDAGVGSLARLLDDEPPSYCCVLSSLDLRGNSIGSKGCKVLTEHback to top mRNA from alignment at L-elsbetiae_contig6069:820..4554+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6069.14606.1 ID=mRNA_L-elsbetiae_contig6069.14606.1|Name=mRNA_L-elsbetiae_contig6069.14606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3735bp|location=Sequence derived from alignment at L-elsbetiae_contig6069:820..4554+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6069:820..4554+ >mRNA_L-elsbetiae_contig6069.14606.1 ID=mRNA_L-elsbetiae_contig6069.14606.1|Name=mRNA_L-elsbetiae_contig6069.14606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1860bp|location=Sequence derived from alignment at L-elsbetiae_contig6069:820..4554+ (Laminarionema elsbetiae ELsaHSoW15)back to top |