mRNA_L-elsbetiae_contig6038.14576.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6038.14576.1
Unique NamemRNA_L-elsbetiae_contig6038.14576.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6038.14576.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 556 bits (1434), Expect = 7.440e-195
Identity = 283/414 (68.36%), Postives = 325/414 (78.50%), Query Frame = 1
Query:    1 NGSTFYCKGTINPDGDCDELRIQSNNETDWYEVRGHGGSLYFKDTVVTSWDTELKAPQEEYEGGRSFLNCVSEKLATSGTGTNCTGEAKDEKGECRMDIINSEMGYMGWFDSESYGLTWKVR---------GFCKNLSNHEVFTTTNVYGDINGSNIHHMYYGMYSYGHEGGVWTNNKMHHNHQYGFDPHDDSDYLTIAHNKVYNNFNHGIIASKRCNDVQIYDNEVSDGGPDAVGIFLHRSSDNALVHGNTITNMKDAGIALLESMNADIYDNVIDGAQYGIRMSLGSAGNFVHDNSFNACSDYGLFTYEGSDPPTEGVSDGRPFFNTFEANQVTNSAGSVKIKYTDSMVISDNVFSGTPNIEIEFFDAQDTTWTNNEIPSTGVCVDNVLSDKGVDVPLSSFAASDGLPSEEC 1215
            NG+ FYC G+    GDCDELRIQS    DWYEVRGHGGS+YF  TVVTSWDT  K PQE YEGGRSFLNCVSEKL    TG  C G AK++ GECRMDIINSEMGYMG+FDSESYGLTWKVR         GFCK+LSN +VF TTNVYGDI  S+IHHMYYG YSYGH+GGVWTNN+MH NHQY            +A+NKVYNN+NHGIIASKRCN+V+IYDN+VSDGGPDAVGIFLHRSSDNA V+GN I NM DAGIALLES NADI+DN IDG Q+GIRMSLGS GN V+DN FN CSD+GL+TY GSD P   VS+GRP  NTF  N+VTNSAG VK K +D++V+++N F+GT   E+EF+DAQ TTW+ N +PS GVC+DN+ SD G  VP S+F++S G+PSEEC
Sbjct:   74 NGAIFYCIGS-EEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKL----TGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQGGVWTNNEMHDNHQY------------VANNKVYNNYNHGIIASKRCNNVKIYDNQVSDGGPDAVGIFLHRSSDNAEVYGNKIWNMPDAGIALLESFNADIHDNEIDGVQFGIRMSLGSGGNSVYDNEFNDCSDWGLYTYMGSDEPD--VSNGRPNGNTFNNNKVTNSAGGVKFKNSDNIVVTNNEFTGTE--ELEFYDAQATTWSGNSLPS-GVCIDNITSDDGNSVPPSTFSSSSGVPSEEC 465          
BLAST of mRNA_L-elsbetiae_contig6038.14576.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 511 bits (1317), Expect = 3.180e-176
Identity = 257/405 (63.46%), Postives = 310/405 (76.54%), Query Frame = 1
Query:    4 GSTFYCKGTINPDGDCDELRIQSNNETDWYEVRGHGGSLYFKDTVVTSWDTELKAPQEEYEGGRSFLNCVSEKLATSGTGTNCTGEAKDEKGECRMDIINSEMGYMGWFDSESYGLTWKVRGFCKNLSNHEVFTTTNVYGDINGSNIHHMYYGMYSYGHEGGVWTNNKMHHNHQYGFDPHDDSDYLTIAHNKVYNNFNHGIIASKRCNDVQIYDNEVSDGGPDAVGIFLHRSSDNALVHGNTITNMKDAGIALLESMNADIYDNVIDGAQYGIRMSLGSAGNFVHDNSFNACSDYGLFTYEGSDPPTEGVSDGRPFFNTFEANQVTNSAGSVKIKYTDSMVISDNVFSGTPNIEIEFFDAQDTTWTNNEIPSTGVCVDNVLSDKGVDVPLSSF-AASDGLPSEEC 1215
            G+ FYC+G+ +  GDCDELRIQS   TD++EVR HGGS+YF+ T+VTSWDT  K PQ  Y GGRSFLNCVSEKL    TG  C G+A++E GECRMDIINSE+GY+G+FDSESYGLTWKVRGFCK+LSN +VF TTNVYG++ GS+IHH YYG YSYGH+GGVW NN+MH NHQYGFDPHDDSDYLT             IIASKRCN+VQIY+NEV DGGP A GIFLHRSSD A+VH N + +M+DAG+A+LESMNADIY+N     ++GIR+SLGS+ N VH+N F   S  GL+TY+GSD PT+GVSDGRP  N FE N++ N    VKIK  D  VI+DNVF+GT   E+EFFDAQ+T W  N +P  GVC+ N+ SD G+D+ LS+F   + GLP+ EC
Sbjct:  139 GAVFYCRGS-SIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKL----TGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQGGVWHNNQMHDNHQYGFDPHDDSDYLT------------SIIASKRCNNVQIYNNEVYDGGPFAAGIFLHRSSDYAIVHDNVVHDMQDAGMAMLESMNADIYNNRFSSVKFGIRLSLGSSENHVHENLFEDVSTQGLYTYQGSDEPTDGVSDGRPSDNLFENNRILNVTKGVKIKEGDDTVITDNVFTGTS--ELEFFDAQNTRWKGNTLPQ-GVCIKNIHSDDGIDIELSTFDRRTAGLPTLEC 523          
BLAST of mRNA_L-elsbetiae_contig6038.14576.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 486 bits (1250), Expect = 2.870e-161
Identity = 246/371 (66.31%), Postives = 286/371 (77.09%), Query Frame = 1
Query:    4 GSTFYCKGTINPDGDCDELRIQSNNETDWYEVRGHGGSLYFKDTVVTSWDTELKAPQEEYEGGRSFLNCVSEKLATSGTGTNCTGEAKDEKGECRMDIINSEMGYMGWFDSESYGLTWKVRGFCKNLSNHEVFTTTNVYGDINGSNIHHMYYGMYSYGHEGGVWTNNKMHHNHQYGFDPHDDSDYLTIAHNKVYNNFNHGIIASKRCNDVQIYDNEVSDGGPDAVGIFLHRSSDNALVHGNTITNMKDAGIALLESMNADIYDNVIDGAQYGIRMSLGSAGNFVHDNSFNACSDYGLFTYEGSDPPTEGVSDGRPFFNTFEANQVTNSAGSVKIKYTDSMVISDNVFSGTPNIE-IEFFDAQDTTWTNNEI 1113
            G  FYCKGT +  GDC++LRIQS    D++EVRGHGGSLYF+DT+VTSWDT  K PQE YE GRSFLNCVSEKL    TG +C G AK+E GECRMDIINSE+ Y+G+FDSESYG+TWKVRGFCK+LSN EVF  TNVYGD+ GS+IHH+YYG YSYGH+GGVWTNNKMH N QYGFDPHDDSDYLTIA+N+VYNN NHGIIASKRCN+V+I++NEV DGG  A GIFLHRSSD A V  NTITNM+DAGIA+LES +A IY N+I+GA+YGIRMSLGS  N V+ NSF   S YGL+TYEGSD P   VSDGRP  N    N V +    VKIK  D      N F    N++  EF ++ +T W+ N+I
Sbjct:  502 GGVFYCKGT-SAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKL----TGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTIAYNEVYNNVNHGIIASKRCNNVKIFENEVRDGGAAAAGIFLHRSSDGAAVFDNTITNMQDAGIAMLESFDAQIYGNIINGAKYGIRMSLGSGNNEVYQNSFTDISQYGLYTYEGSDEPD--VSDGRPSGNVLALNLVEDCPIGVKIKEGDDNEFYQNTFI---NVDAFEFPESTNTMWSGNDI 862          
BLAST of mRNA_L-elsbetiae_contig6038.14576.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 460 bits (1183), Expect = 4.900e-157
Identity = 236/402 (58.71%), Postives = 295/402 (73.38%), Query Frame = 1
Query:    4 GSTFYCKGTINPDGDCDELRIQSNNETDWYEVRGHGGSLYFKDTVVTSWDTELKAPQEEYEGGRSFLNCVSEKLATSGTGTNCTGEAKDEKGECRMDIINSEMGYMGWFDSESYGLTWKVRGFCKNLSNHEVFTTTNVYGDINGSNIHHMYYGMYSYGHEGGVWTNNKMHHNHQYGFDPHDDSDYLTIAHNKVYNNFNHGIIASKRCNDVQIYDNEVSDGGPDAVGIFLHRSSDNALVHGNTITNMKDAGIALLESMNADIYDNVIDGAQYGIRMSLGSAGNFVHDNSFNACSDYGLFTYEGSDPPTEGVSDGRPFFNTFEANQVTNSAGSVKIKYTDSMVISDNVFSGTPNIEIEFFDAQDTTWTNNEIPSTGVCVDNVLSDKGVDVPLSSFAASDGLPSE 1209
            G+T YC+G     G+C ELRI+S + +D++E+RGHGG+LYF+DT+VTSWD + + PQE Y+ GRSF+ CVSE L    T   C   A +  GECRMDII+SEMGY+G+  SE+YG+TWKVRGFC +LSN +VF   NVYGD+ GS+IHHMYYGMYS+GH+GGVWTNN MH NHQYGFDPHDDSDYL IA NKVYNN NHGIIASKRCN+V+IYDNEV DGG DA GIFLHRS D++ V+GNTITNM DAGIA+LE+   DI+DN +DG ++GIR+ LGS+ N VHDN F    + G+FTY GSD P  G   GRP  N F  N +  +   VKIK +D++ I++N FSGT   EIEF +A D  W+ N IP T  C++++ ++       S+F  S GLP E
Sbjct:   64 GATLYCRGK-GVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDT---C---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNVKIYDNEVYDGGADAAGIFLHRSGDDSEVYGNTITNMGDAGIAMLETSGCDIHDNQVDGGEFGIRVHLGSSNNKVHDNVFKNIWNVGMFTYVGSDEPWVGG--GRPCDNEFYNNTIQATETGVKIKESDNISITNNAFSGTT--EIEFNNAIDIVWSGNSIP-TNTCLEDIDNN-------STFTGSSGLPLE 446          
BLAST of mRNA_L-elsbetiae_contig6038.14576.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 455 bits (1171), Expect = 2.090e-156
Identity = 242/405 (59.75%), Postives = 278/405 (68.64%), Query Frame = 1
Query:    1 NGSTFYCKGTINPDGDCDELRIQSNNETDWYEVRGHGGSLYFKDTVVTSWDTELKAPQEEYEGGRSFLNCVSEKLATSGTGTNCTGEAKDEKGECRMDIINSEMGYMGWFDSESYGLTWKVRGFCKNLSNHEVFTTTNVYGDINGSNIHHMYYGMYSYGHEGGVWTNNKMHHNHQYGFDPHDDSDYLTIAHNKVYNNFNHGIIASKRCNDVQIYDNEVSDGGPDAVGIFLHRSSDNALVHGNTITNMKDAGIALLESMNADIYDNVIDGAQYGIRMSLGSAGNFVHDNSFNACSDYGLFTYEGSDPPTEGVSDGRPFFNTFEANQVTNSAGSVKIKYTDSMVISDNVFSGTPNIEIEFFDAQDTTWTNNEIPSTGVCVDNVLSDKGVDVPLSSFAASDGLPSEEC 1215
            +G+ FYC G+    GDCDELRIQS    DWYEVRGHGGS+YF  TVVTSWDT  K PQE YEGGRSFLNCVSEKL    TG  C G+AK+++GECRMDIINSEMGYMG+FD+ESYGLTWKVRGFCK+LSN +VF TTNVYGDI  SNIHHMYYGMYSYGH+GGVWTNN+MH NHQYGFDPHDDSDYLTIA             ASKRCN+VQIY+NEVSDGGP+AVGIFLHRSSDNA V+G                                                       G       D P   VS+GRP  NTF  N++TN+AG VKIK +D++VIS+N F+GT   E+EFFDAQ TTW++N +PS GVC+DNV SD G  VP S+F++S G+PSEEC
Sbjct:   29 DGAIFYCIGS-EEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKL----TGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQGGVWTNNEMHDNHQYGFDPHDDSDYLTIAXXXXXXXXXXXXXASKRCNNVQIYNNEVSDGGPEAVGIFLHRSSDNAEVYG-------------------------------------------------------GXXXXXXXDAPD--VSNGRPNGNTFNNNKITNTAGGVKIKNSDNIVISNNDFTGTE--ELEFFDAQATTWSDNSLPS-GVCIDNVTSDDGNSVPPSTFSSSSGVPSEEC 368          
BLAST of mRNA_L-elsbetiae_contig6038.14576.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 404 bits (1039), Expect = 1.430e-136
Identity = 205/301 (68.11%), Postives = 234/301 (77.74%), Query Frame = 1
Query:    4 GSTFYCKGTINPDGDCDELRIQSNNETDWYEVRGHGGSLYFKDTVVTSWDTELKAPQEEYEGGRSFLNCVSEKLATSGTGTNCTGEAKDEKGECRMDIINSEMGYMGWFDSESYGLTWK--------VRGFCKNLSNHEVFTTTNVYGDINGSNIHHMYYGMYSYGHEGGVWTNNKMHHNHQYGFDPHDDSDYLTIAHNKVYNNFNHGIIASKRCNDVQIYDNEVSDGGPDAVGIFLHRSSDNALVHGNTITNMKDAGIALLESMNADIYDNVIDGAQYGIRMSLGSAGNFVHDNSFNACS 882
            G  FYCKGT +  GDC++LRIQS    D++EVRGHGGSLYF+DT+VTSWDT  K PQE YEGGRSFLNCVSEKL    TG +C G AK+E GECRMDIINSE+ Y+G+FDSESYG+TWK        VRGFCK+LSN EVF  TNVYGD+ GS+IHH+YYG YSYGH+GGVWTNNKMH N QYGFDPHDDSDYLT             IIASKRCN+V+I++NEV DGG  AVGIFLHRSSD+A V  NTITNM+DAGIALLE+ +A IY N I+GA+YGIRMSLGS  N V+ NSF   S
Sbjct:   51 GGVFYCKGT-SAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKL----TGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQGGVWTNNKMHDNWQYGFDPHDDSDYLTR------------IIASKRCNNVKIFENEVRDGGAAAVGIFLHRSSDDAAVFDNTITNMQDAGIALLEAFDAQIYGNTINGAKYGIRMSLGSGNNVVYQNSFTDIS 334          
BLAST of mRNA_L-elsbetiae_contig6038.14576.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 383 bits (984), Expect = 1.850e-124
Identity = 210/388 (54.12%), Postives = 264/388 (68.04%), Query Frame = 1
Query:    1 NGSTFYCKGTINPDGDCDELRIQSNNETDWYEVRGHGGSLYFKDTVVTSWDTELKAPQEEYEG-GRSFLNCVSEKLATSGTGTNCTGEAKDEKGECRMDIINSEMGYMGWFDSESYGLTWKVRGFCKNLS------NHEVFTTTNVYGDINGSNIHHMYYGMYSYGHEGGVWTNNKMHHNHQYGFDPHDDSDYLTIAHNKVYNNFNHGIIASKRCNDVQIYDNEVSDGGPDAVGIFLHRSSDNALVHGNTITNMKDAGIALLESMNADIYDNVIDGAQYGIRMSLGSAGNFVHDNSFNACSDYGLFTYEGSDPPTEGVSDGRPFFNTFEANQVTNSAGS--VKIKYTDSMVISDNVFSGTPNIEIEFFDAQDTTWTNNEIPSTGVCVD 1137
            +GST    GT    GD D LR+ S ++ D+ EVRG+GG+L+F+ T VTSWDT+    + E++G GRSF+NCV++         +C G +  E GECRMDII+S MG MGWFD+ESYGLTWKVRG C+         NHE+F   NVYGDI  S I+ MYYG YSYGH+GGVW +N M  N QYGFDPHDDSD LTI++N VY N NHGIIASKRCN+V+I++NEV DGG DAVGIFLHRSSD A VH N + NM+DAG+A++ES +A+IYDN     +YGIR+SLGS  N + +N F+  + YGL+TY GSD P    S+GRP  N F+ N +     +  V IK  DS V  DNVF+G    E E  D+ DTTW +N   + G C+D
Sbjct:  242 DGSTLLVHGTA-ASGDADVLRLLSTSD-DFIEVRGYGGNLHFQSTTVTSWDTD-NGQEREWDGDGRSFINCVTQ--FDDSAIWDCDGRSNQEWGECRMDIISSTMGNMGWFDAESYGLTWKVRGACEIDPDTGVPYNHEIFEDHNVYGDILNSEIYGMYYGHYSYGHQGGVWDSNIMRDNIQYGFDPHDDSDDLTISNNIVYGNGNHGIIASKRCNNVKIFNNEVYDGGEDAVGIFLHRSSDGAEVHDNVVYNMQDAGMAMMESYDANIYDNSFTNCRYGIRLSLGSGRNIITNNLFSGITQYGLYTYMGSDDPDVPNSNGRPSDNVFDGNTIETDGDNIGVHIKEGDSNVFIDNVFTGVSTYEFE--DSSDTTWVDN---TGGGCLD 619          
BLAST of mRNA_L-elsbetiae_contig6038.14576.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 383 bits (984), Expect = 5.150e-122
Identity = 204/376 (54.26%), Postives = 252/376 (67.02%), Query Frame = 1
Query:   43 GDCDELRIQSNNETDWYEVRGHGGSLYFKDTVVTSWDTELKAPQEEYEGGRSFLNCVSEKLATSGTGTNCTGEAKDEKGECRMDIINSEMGYMGWFDSESYGLTWKVRGFCKNLSNHEVFTTTNVYGDINGSNIHHMYYGMYSYGHEGGVWTNNKMHHNHQYGFDPHDDSDYLTIAHNKVYNNFNHGIIASKRCNDVQIYDNEVSDGGPDAVGIFLHRSSDNALVHGNTITNMKDAGIALLESMNADIYDNVIDGAQYGIRMSLGSAGNFVHDNSFNACSDYGLFTYEGSDPPTEGVS-DGRPFFNTFEANQVTNSAGSVKIKYTDSMVISDNVF-SGTPNIEIEFFDAQDTTWTNNEIPSTGVCVDNVLSDKGVD 1164
            GD   LRIQS    D+YE+RGHGGSL F DT VTSWDT+ K     Y+  RSF+ CVSE+LA       C G A +  GECRMDII SEMG MG+  +ESYG++WKVRG+C    N EVF  T V GDI  S+I+ MYYG YS+GH+GG+WT NKMH N QYGFDPHDDSD L IA+N V+ N NHGIIASKRCN+V+I+ N V DGG  AVGIFLHRSSD+  V GNT+ +MKDAG+A++ESM A I+DN     +YGIR+S+G+A N V +NSF  C  YG++TY+G+D P      DG    NTF AN V    G VKI+  + +V +DN F   +   E  F D +D  WTNN +P   +C+     DK +D
Sbjct:  467 GDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPD--TCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSFGHDGGIWTGNKMHDNAQYGFDPHDDSDNLEIAYNTVWGNGNHGIIASKRCNNVKIHHNTVYDGGEGAVGIFLHRSSDDCEVWGNTVYDMKDAGMAIMESMGAHIHDNTFTNVKYGIRLSVGAARNIVENNSFLECDQYGIYTYQGNDKPEASKDWDGLLVDNTFHANTVE---GGVKIQKAEGIVFTDNNFYEHSSGEEYRFEDCEDVVWTNNRVPDD-ICL---KGDKNID 833          
BLAST of mRNA_L-elsbetiae_contig6038.14576.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 360 bits (925), Expect = 2.860e-113
Identity = 196/379 (51.72%), Postives = 246/379 (64.91%), Query Frame = 1
Query:    1 NGSTFYCKGTINPDGDCDELRIQSNNETDWYEVRGHGGSLYFKDTVVTSWDTELKAPQEEYEGGRSFLNCVSEKLATSGTGTNCTGEAKDEKGECRMDIINSEMGYMGWFDSESYGLTWKVRGFCKNLSNHEVFTTTNVYGDINGSNIHHMYYGMYSYGHEGGVWTNNKMHHNHQYGFDPHDDSDYLTIAHNKVYNNFNHGIIASKRCNDVQIYDNEVSDGGPDAVGIFLHRSSDNALVHGNTITNMKDAGIALLESMNADIYDNVIDGAQYGIRMSLGSAGNFVHDNSFNACSDYGLFTYEGSDPPTEGVSDGRPFFNTFEANQVTNSAGSVKIKYTDSMVISDNVFSGTPNIEIEFFDAQDTTWTNNEIPSTGVCVD 1137
            +G T Y  GT +  GD D LRIQS ++ D++E+RG GGSL F +T VTSWDT+    + EYEGGRSF+NCV++         +C+G +  E+GECRMDII+S MG MGWFD+ESYGLTWKVRG C +LSN E+    NVYGDI GS I+ MYYGMYSYGH+GGVWT+N M  N  YGFDPHDDSD LTIA N VY N NHGIIASKRCN+V+IY                                      AL+ES  A+IYDN I+  +YGIR+SLGSA N +HDN+F++ S YGL+TY+GSD P    +DGR   N+F+AN ++N+  ++KIK  D    ++NVF      E E  D+ DT WTNN+I   G C+D
Sbjct:  464 DGVTLYVHGT-SAGGDADVLRIQSTDD-DFWEIRGWGGSLSFLETTVTSWDTDKGEERTEYEGGRSFINCVTQ--FDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCSDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSYGHQGGVWTDNVMRDNILYGFDPHDDSDDLTIAGNTVYGNGNHGIIASKRCNNVEIY--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALMESFRAEIYDNTIENCKYGIRLSLGSADNDIHDNTFDSSSTYGLYTYKGSDDPDVSGNDGRVKDNSFDANTISNTDVAMKIKEGDDNSFTNNVFENVKTFEFE--DSTDTVWTNNDIG--GGCLD 832          
BLAST of mRNA_L-elsbetiae_contig6038.14576.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 340 bits (871), Expect = 5.080e-109
Identity = 186/371 (50.13%), Postives = 239/371 (64.42%), Query Frame = 1
Query:    1 NGSTFYCKGTINPDGDCDELRIQSNNETDWYEVRGHGGSLYFKDTVVTSWDTELKAPQEEYEGGRSFLNCVSEKLATSGTGTNCTGEAKDEKGECRMDIINSEMGYMGWFDSESYGLTWKVRGFCKNLSNHEVFTTTNVYGDINGSNIHHMYYGMYSYGHEGGVWTNNKMHHNHQYGFDPHDDSDYLTIAHNKVYNNFNHGIIASKRCNDVQIYDNEVSDGGPDAVGIFLHRSSDNALVHGNTITNMKDAGIALLESMNADIYDNVIDGAQYGIRMSLGSAGNFVHDNSFNACSDYGLFTYEGSDPPTEGVSDGRPFFNTFEANQVTNSAGSVKIKYTDSMVISDNVFS--GTPNIEIEFFDAQDTTWTNN 1107
            +G T    GT +  GD DELR+ S +ET +  +R HGGSL F  T V SWDT   +P E+   GRS+++ VSE + T    T C G AK+  GE RMDI NSE+GY+G+ DSESYGLTWKVRGFCK+ SN E+F   NVYG++  S+IHH+ +G+Y+YGH+ G W  NKMH N  YGFDPHDDSD+LTI  N+VYNN  HGIIASKRCN V I  NEV  G   + GIFLHRSSD+A+V GN + +  DAG+A+LES NAD+ +N  +  +YG+RMS+G A N   +N  +  S Y  +TY GSD P + VS GR   N F  N  + +  ++KIK  D     DNVF       + + F DA ++    N
Sbjct:  117 DGITLKVYGT-DEGGDADELRLLSTSET-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSE-IVTDEDET-CEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEP-DVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGN 482          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6038.14576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGU8_9PHAE7.440e-19568.36MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LRM4_ECTSI3.180e-17663.46Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
D8LC73_ECTSI2.870e-16166.31Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
D7FRR8_ECTSI4.900e-15758.71Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FIU4_ECTSI2.090e-15659.75Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KWQ2_9PHAE1.430e-13668.11MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G8D9_ECTSI1.850e-12454.12Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5JNF5_9PHAE5.150e-12254.26MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FWE8_ECTSI2.860e-11351.72Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7FXE4_ECTSI5.080e-10950.13Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6038contigL-elsbetiae_contig6038:5638..7679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score360.5
Seed ortholog evalue7.7e-97
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons4
Model size1288
Cds size930
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6038.14576.1prot_L-elsbetiae_contig6038.14576.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6038 5708..7175 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816659.1195636-UTR-L-elsbetiae_contig6038:5637..57071622816659.1195636-UTR-L-elsbetiae_contig6038:5637..5707Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6038 5638..5707 -
1691683719.2283635-UTR-L-elsbetiae_contig6038:5637..57071691683719.2283635-UTR-L-elsbetiae_contig6038:5637..5707Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6038 5638..5707 -
1622816659.1721032-UTR-L-elsbetiae_contig6038:7175..73671622816659.1721032-UTR-L-elsbetiae_contig6038:7175..7367Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6038 7176..7367 -
1691683719.2826035-UTR-L-elsbetiae_contig6038:7175..73671691683719.2826035-UTR-L-elsbetiae_contig6038:7175..7367Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6038 7176..7367 -
1622816659.183624-UTR-L-elsbetiae_contig6038:7583..76791622816659.183624-UTR-L-elsbetiae_contig6038:7583..7679Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6038 7584..7679 -
1691683719.2921114-UTR-L-elsbetiae_contig6038:7583..76791691683719.2921114-UTR-L-elsbetiae_contig6038:7583..7679Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6038 7584..7679 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816659.1322727-CDS-L-elsbetiae_contig6038:5707..58921622816659.1322727-CDS-L-elsbetiae_contig6038:5707..5892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6038 5708..5892 -
1691683719.2409186-CDS-L-elsbetiae_contig6038:5707..58921691683719.2409186-CDS-L-elsbetiae_contig6038:5707..5892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6038 5708..5892 -
1622816659.1446297-CDS-L-elsbetiae_contig6038:6187..68601622816659.1446297-CDS-L-elsbetiae_contig6038:6187..6860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6038 6188..6860 -
1691683719.2512784-CDS-L-elsbetiae_contig6038:6187..68601691683719.2512784-CDS-L-elsbetiae_contig6038:6187..6860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6038 6188..6860 -
1622816659.1587868-CDS-L-elsbetiae_contig6038:7103..71751622816659.1587868-CDS-L-elsbetiae_contig6038:7103..7175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6038 7104..7175 -
1691683719.2673228-CDS-L-elsbetiae_contig6038:7103..71751691683719.2673228-CDS-L-elsbetiae_contig6038:7103..7175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6038 7104..7175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6038.14576.1

>prot_L-elsbetiae_contig6038.14576.1 ID=prot_L-elsbetiae_contig6038.14576.1|Name=mRNA_L-elsbetiae_contig6038.14576.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=310bp
MDIINSEMGYMGWFDSESYGLTWKVRGFCKNLSNHEVFTTTNVYGDINGS
NIHHMYYGMYSYGHEGGVWTNNKMHHNHQYGFDPHDDSDYLTIAHNKVYN
NFNHGIIASKRCNDVQIYDNEVSDGGPDAVGIFLHRSSDNALVHGNTITN
MKDAGIALLESMNADIYDNVIDGAQYGIRMSLGSAGNFVHDNSFNACSDY
GLFTYEGSDPPTEGVSDGRPFFNTFEANQVTNSAGSVKIKYTDSMVISDN
VFSGTPNIEIEFFDAQDTTWTNNEIPSTGVCVDNVLSDKGVDVPLSSFAA
SDGLPSEEC*
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mRNA from alignment at L-elsbetiae_contig6038:5638..7679-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6038.14576.1 ID=mRNA_L-elsbetiae_contig6038.14576.1|Name=mRNA_L-elsbetiae_contig6038.14576.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2042bp|location=Sequence derived from alignment at L-elsbetiae_contig6038:5638..7679- (Laminarionema elsbetiae ELsaHSoW15)
AATGGATCGACCTTCTACTGCAAGGGTACCATCAACCCCGACGGTGACTG CGACGAGCTTCGCATCCAGTCAAACAACGAGACCGACTGGTATGAGGTGC GTGTTAGTGCCGAGGGTCAATGTGCCGGGCGCAGCAGGATATGTATGTAC ATACGTGCGCCGTCGTGCCTCGGTTTGGTCGCGAAGAGAGCCAGATGAAT GGCAAACAAGCACGGCACCAGCACACCCGAGAACATACGGCCACATCACG AGTCCACCGCCTTGCCCCTCTTTTTTCTCTCCTTCTGTGCTCACATTTTT GGCGTGTCACAGGTGCGCGGACACGGCGGCAGCTTGTACTTCAAAGACAC GGTCGTCACCTCTTGGGACACTGAATTGAAGGCGCCCCAGGAGGAGTACG AGGGCGGACGATCCTTCCTCAACTGCGTCTCCGAGAAGCTGGCCACCTCA GGAACCGGCACGAATTGCACGGGGGAGGCTAAGGACGAAAAGGGAGAGTG CCGCATGGACATCATCAACTCGGAGATGGGGTACATGGGCTGGTTCGATT CTGAGTCGTACGGCCTCACGTGGAAGGTGCGGTGACGGAAGTGGGATCGG TCGCCCTTTTTCTATTCCGCGTATACTCGTGTCCCCCACGCTGATGCAAG GGGGCTGTGTGCCCTATCCGCGGTAGCGTGCCATCGCAAGTTGTCGTTTT GCTGGCAGGTCATCAAATTGATTGAGGTATGACATATCCCTATGACCTCA TCATCATTCGTTTGCTGCTGATTCCTAAATTGCTCATACCTTTGTACGCA CACGCTCTTCGCCACGCAGGTTCGCGGGTTCTGCAAAAACCTGTCCAACC ACGAGGTGTTCACGACGACCAACGTGTACGGCGACATCAACGGATCCAAC ATCCACCACATGTACTACGGCATGTACTCGTACGGACACGAGGGAGGAGT ATGGACCAACAACAAGATGCACCACAACCACCAGTACGGTTTCGACCCGC ACGACGACTCCGACTATCTCACCATCGCGCACAACAAGGTGTACAACAAC TTCAACCATGGCATCATCGCCTCAAAGCGTTGCAACGACGTCCAGATTTA CGACAACGAGGTCTCCGACGGGGGCCCCGATGCCGTGGGCATCTTCCTCC ACCGCAGCTCCGACAACGCCTTGGTTCACGGCAACACCATCACGAACATG AAGGACGCCGGCATCGCCTTGCTGGAGTCGATGAACGCCGATATCTACGA CAACGTCATCGACGGCGCCCAGTACGGCATCCGGATGAGCCTGGGCTCTG CCGGCAACTTCGTGCACGACAACTCCTTCAACGCCTGCTCCGACTACGGC CTGTTTACGTACGAGGGGTCCGACCCGCCGACCGAGGGAGTCAGCGACGG GCGTCCTTTCTTCAACACGTTCGAAGCCAACCAGGTCACCAACTCCGCGG GCTCCGTCAAGATCAAGTACACCGACAGTATGGTAATCTCGGGTGAGTTT CGCTTTACTGCCCGACGCCGAACGGTGAAGAATTTCGATCCGCGTCGAGA TTCATGGCATATATAGTAGCTGCTGCTGTCCGTGGTACTAGTCTCGGGCT ATCCGTTGAATGAGCCTACAGGCCTCTTGTAACGCATTGGTAGGTACACC CGGCACGAGCGACACCACGGCAGCGCGCCCAGCATATGCCGTACTTTGGA AGACGTTGTATCGAAATCGCTGCTGACTTGGTGCTCATTTGCGCTTGCAA TTTGTTTCGCATGTAATTTCGGCGTCCCTCTGTGCAGACAACGTTTTTTC CGGAACGCCCAACATCGAGATTGAGTTCTTTGACGCTCAGGATACGACGT GGACGAACAACGAGATTCCCAGCACGGGCGTTTGCGTCGACAACGTTCTG TCCGACAAGGGCGTAGACGTTCCCTTGAGCTCTTTCGCTGCCTCCGACGG GCTGCCGTCGGAGGAGTGCTGAGTGTCGTATACCGTACGTACGTATTGTC ACCCATTTCCATTTCCTCAAAAGGTGGTCTTGTCCCACCGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6038:5638..7679-

>mRNA_L-elsbetiae_contig6038.14576.1 ID=mRNA_L-elsbetiae_contig6038.14576.1|Name=mRNA_L-elsbetiae_contig6038.14576.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1860bp|location=Sequence derived from alignment at L-elsbetiae_contig6038:5638..7679- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACATCATCAACTCGGAGATGGGGTACATGGGCTGGTTCGATTCTGA
GTCGTACGGCCTCACGTGGAAGATGGACATCATCAACTCGGAGATGGGGT
ACATGGGCTGGTTCGATTCTGAGTCGTACGGCCTCACGTGGAAGGTTCGC
GGGTTCTGCAAAAACCTGTCCAACCACGAGGTGTTCACGACGACCAACGT
GTACGGCGACATCAACGGATCCAACATCCACCACATGTACTACGGCATGT
ACTCGTACGGACACGAGGGAGGAGTATGGACCAACAACAAGATGCACCAC
AACCACCAGTACGGTTTCGACCCGCACGACGACTCCGACTATCTCACCAT
CGCGCACAACAAGGTGTACAACAACTTCAACCATGGCATCATCGCCTCAA
AGCGTTGCAACGACGTCCAGATTTACGACAACGAGGTCTCCGACGGGGGC
CCCGATGCCGTGGGCATCTTCCTCCACCGCAGCTCCGACAACGCCTTGGT
TCACGGCAACACCATCACGAACATGAAGGACGCCGGCATCGCCTTGCTGG
AGTCGATGAACGCCGATATCTACGACAACGTCATCGACGGCGCCCAGTAC
GGCATCCGGATGAGCCTGGGCTCTGCCGGCAACTTCGTGCACGACAACTC
CTTCAACGCCTGCTCCGACTACGGCCTGTTTACGTACGAGGGGTCCGACC
CGCCGACCGAGGGAGTCAGCGACGGGCGTCCTTTCTTCAACACGTTCGAA
GCCAACCAGGTCACCAACTCCGCGGGCTCCGTCAAGATCAAGTACACCGA
CAGTATGGTAATCTCGGGTTCGCGGGTTCTGCAAAAACCTGTCCAACCAC
GAGGTGTTCACGACGACCAACGTGTACGGCGACATCAACGGATCCAACAT
CCACCACATGTACTACGGCATGTACTCGTACGGACACGAGGGAGGAGTAT
GGACCAACAACAAGATGCACCACAACCACCAGTACGGTTTCGACCCGCAC
GACGACTCCGACTATCTCACCATCGCGCACAACAAGGTGTACAACAACTT
CAACCATGGCATCATCGCCTCAAAGCGTTGCAACGACGTCCAGATTTACG
ACAACGAGGTCTCCGACGGGGGCCCCGATGCCGTGGGCATCTTCCTCCAC
CGCAGCTCCGACAACGCCTTGGTTCACGGCAACACCATCACGAACATGAA
GGACGCCGGCATCGCCTTGCTGGAGTCGATGAACGCCGATATCTACGACA
ACGTCATCGACGGCGCCCAGTACGGCATCCGGATGAGCCTGGGCTCTGCC
GGCAACTTCGTGCACGACAACTCCTTCAACGCCTGCTCCGACTACGGCCT
GTTTACGTACGAGGGGTCCGACCCGCCGACCGAGGGAGTCAGCGACGGGC
GTCCTTTCTTCAACACGTTCGAAGCCAACCAGGTCACCAACTCCGCGGGC
TCCGTCAAGATCAAGTACACCGACAGTATGGTAATCTCGGACAACGTTTT
TTCCGGAACGCCCAACATCGAGATTGAGTTCTTTGACGCTCAGGATACGA
CGTGGACGAACAACGAGATTCCCAGCACGGGCGTTTGCGTCGACAACGTT
CTGTCCGACAAGGGCGTAGACGTTCCCTTGAGCTCTTTCGCTGCCTCCGA
CGGGCTGCCGTCGGAGGAGTGCTGAACAACGTTTTTTCCGGAACGCCCAA
CATCGAGATTGAGTTCTTTGACGCTCAGGATACGACGTGGACGAACAACG
AGATTCCCAGCACGGGCGTTTGCGTCGACAACGTTCTGTCCGACAAGGGC
GTAGACGTTCCCTTGAGCTCTTTCGCTGCCTCCGACGGGCTGCCGTCGGA
GGAGTGCTGA
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