mRNA_L-elsbetiae_contig5989.14495.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5989.14495.1
Unique NamemRNA_L-elsbetiae_contig5989.14495.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5989.14495.1 vs. uniprot
Match: D8LS87_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS87_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 5.820e-39
Identity = 75/106 (70.75%), Postives = 83/106 (78.30%), Query Frame = 1
Query:    1 TARRSGISLRYKEGLYFSSISGKANDYAVNSTKKGPRGRKWRCMFVCNVAAGKAFCTTEVGLPSDKCPPPGYDSVVGEVSPTGLNYDELVVYKEEAALPSYLIVYS 318
            TARR+   LRY EGLYFSS+SGKANDYA  S K    GR+ RCMFV NVAAGKAF T E  L  ++CPP GYDSVVGEV   GLNYDELVVYK+EAALP++LIVYS
Sbjct:  349 TARRTNFGLRYGEGLYFSSVSGKANDYADFSEKTDSNGRRLRCMFVANVAAGKAFKTHETSLQQNECPPAGYDSVVGEVG-QGLNYDELVVYKDEAALPTHLIVYS 453          
BLAST of mRNA_L-elsbetiae_contig5989.14495.1 vs. uniprot
Match: D8LKU8_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU8_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 6.390e-36
Identity = 67/106 (63.21%), Postives = 79/106 (74.53%), Query Frame = 1
Query:    1 TARRSGISLRYKEGLYFSSISGKANDYAVNSTKKGPRGRKWRCMFVCNVAAGKAFCTTEVGLPSDKCPPPGYDSVVGEVSPTGLNYDELVVYKEEAALPSYLIVYS 318
            TARR+    RY EGLYFSS+SGK+NDYA  S K G  G+K RCMFV NV AG A+ T +  L  D CPP GYDSVVGEV  +GL +DELV Y++EAA+PSYLIVY+
Sbjct:  127 TARRANYRRRYGEGLYFSSVSGKSNDYAQQSEKVGSDGKKVRCMFVANVTAGNAYLTQQGSLGQDMCPPAGYDSVVGEVG-SGLIHDELVAYEDEAAIPSYLIVYA 231          
BLAST of mRNA_L-elsbetiae_contig5989.14495.1 vs. uniprot
Match: D8LS88_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS88_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.190e-35
Identity = 70/106 (66.04%), Postives = 80/106 (75.47%), Query Frame = 1
Query:    1 TARRSGISLRYKEGLYFSSISGKANDYAVNSTKKGPRGRKWRCMFVCNVAAGKAFCTTEVGLPSDKCPPPGYDSVVGEVSPTGLNYDELVVYKEEAALPSYLIVYS 318
            TA     +LRY +G+YFSS+SGKANDYA  + K    G K RCMFV NVAAGKA+ T E  L   KCPPPGY+SVVGEV   GLNYDELVVYKEEAALP++LIVY+
Sbjct:  343 TALARNFNLRYGKGVYFSSVSGKANDYADLTAKTAKDGTKLRCMFVANVAAGKAYSTKEKALDDGKCPPPGYESVVGEVG-QGLNYDELVVYKEEAALPTHLIVYA 447          
BLAST of mRNA_L-elsbetiae_contig5989.14495.1 vs. uniprot
Match: D7FXR1_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR1_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 2.430e-35
Identity = 65/106 (61.32%), Postives = 78/106 (73.58%), Query Frame = 1
Query:    1 TARRSGISLRYKEGLYFSSISGKANDYAVNSTKKGPRGRKWRCMFVCNVAAGKAFCTTEVGLPSDKCPPPGYDSVVGEVSPTGLNYDELVVYKEEAALPSYLIVYS 318
            TAR +G  LRY EG+Y +S+SGKANDYA  S KK     + RCMFV NVA G+ F T    LP+++CPPPGY SVVGEV   GLN+DE VVY EEAALP++LIVY+
Sbjct:  124 TARATGFPLRYGEGVYLTSVSGKANDYASRSAKKIGNDSELRCMFVANVAVGRTFKTKSTSLPANQCPPPGYQSVVGEVG-RGLNFDEFVVYDEEAALPTHLIVYA 228          
BLAST of mRNA_L-elsbetiae_contig5989.14495.1 vs. uniprot
Match: A0A6H5JBF5_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBF5_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.490e-35
Identity = 65/106 (61.32%), Postives = 80/106 (75.47%), Query Frame = 1
Query:    1 TARRSGISLRYKEGLYFSSISGKANDYAVNSTKKGPRGRKWRCMFVCNVAAGKAFCTTEVGLPSDKCPPPGYDSVVGEVSPTGLNYDELVVYKEEAALPSYLIVYS 318
            TAR +G+ LRY EG+Y +S+SGKANDYA  S KK     + RCMFV +VA G+AF T    LP+++CPPPGY SVVGEV   GLN+DE VVY EEAALP++LIVY+
Sbjct:  125 TARATGVPLRYGEGIYLTSVSGKANDYASRSAKKIGIASELRCMFVASVAVGRAFKTKSTRLPANQCPPPGYQSVVGEVG-QGLNFDEFVVYNEEAALPTHLIVYA 229          
BLAST of mRNA_L-elsbetiae_contig5989.14495.1 vs. uniprot
Match: D8LS86_ECTSI (PARP catalytic domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS86_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 2.440e-34
Identity = 67/106 (63.21%), Postives = 81/106 (76.42%), Query Frame = 1
Query:    1 TARRSGISLRYKEGLYFSSISGKANDYAVNSTKKGPRGRKWRCMFVCNVAAGKAFCTTEVGLPSDKCPPPGYDSVVGEVSPTGLNYDELVVYKEEAALPSYLIVYS 318
            TARR+   LRY +GLYFSS+SGKANDYA  S K    G+K RCMF+ +V  G+AF T E  LP ++CPPPG+DSVVGE  P  LNY E+VVYKEEAALP++LIVY+
Sbjct:  369 TARRTNFDLRYGDGLYFSSVSGKANDYAELSEKTDRSGKKVRCMFLSSVTVGRAFITYEGKLPPEQCPPPGFDSVVGEKGPA-LNYPEVVVYKEEAALPTHLIVYA 473          
BLAST of mRNA_L-elsbetiae_contig5989.14495.1 vs. uniprot
Match: D8LKU5_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU5_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 7.710e-34
Identity = 70/106 (66.04%), Postives = 79/106 (74.53%), Query Frame = 1
Query:    1 TARRSGISLRYKEGLYFSSISGKANDYAVNSTKKGPRGRKWRCMFVCNVAAGKAFCTTEVGLPSDKCPPPGYDSVVGEVSPTGLNYDELVVYKEEAALPSYLIVYS 318
            TAR SGI LRY  G+YFSS+SGKANDYA  S K G  G + RCMFV NVA GKAF T +  LP  +CPP G  SVVGEV    LNYDE+VVYKEEAALP++LIVY+
Sbjct:  571 TARASGIPLRYGTGIYFSSVSGKANDYARLSAKTGSDGAELRCMFVANVAGGKAFSTKKSHLPQSECPPSGCQSVVGEVG-HALNYDEVVVYKEEAALPTHLIVYA 675          
BLAST of mRNA_L-elsbetiae_contig5989.14495.1 vs. uniprot
Match: A0A813I6I7_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I6I7_POLGL)

HSP 1 Score: 124 bits (311), Expect = 1.830e-31
Identity = 66/107 (61.68%), Postives = 79/107 (73.83%), Query Frame = 1
Query:   10 RSGISLRYKEGLYFSSISGKANDYAVNST--KKGPRG--RKWRCMFVCNVAAGKAFCTTEVGLPSDKCPPPGYDSVVGEVSPTGLNYDELVVYKEEAALPSYLIVYS 318
            R+  +LRY  GLYFS+ SGK+NDYA  S   K   RG  R+WRCMFVC+VA GKA  TTE  LP  +CPPPGYD+VVGEV    LN+DE+VVY E AA+PS+L+VYS
Sbjct:  340 RNTSALRYGPGLYFSATSGKSNDYAEGSERMKHEARGAQRRWRCMFVCHVAIGKAHLTTEGWLPQQQCPPPGYDAVVGEVG-ENLNFDEVVVYDEAAAVPSFLVVYS 445          
BLAST of mRNA_L-elsbetiae_contig5989.14495.1 vs. uniprot
Match: D8LKU9_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU9_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 3.060e-30
Identity = 64/106 (60.38%), Postives = 73/106 (68.87%), Query Frame = 1
Query:    1 TARRSGISLRYKEGLYFSSISGKANDYAVNSTKKGPRGRKWRCMFVCNVAAGKAFCTTEVGLPSDKCPPPGYDSVVGEVSPTGLNYDELVVYKEEAALPSYLIVYS 318
            TAR +   LRY  G+Y SS+SGKANDYA  S K G  G + RCMFV NVA GKAF T    LP   CPP GY SVVGEV    LN+DE+VVYKE A LP++LIVY+
Sbjct:  432 TARATRFPLRYGPGVYLSSVSGKANDYAGRSAKTGSDGTELRCMFVANVAVGKAFNTKSSNLPQSACPPLGYQSVVGEVG-QALNFDEVVVYKEAAVLPTHLIVYA 536          
BLAST of mRNA_L-elsbetiae_contig5989.14495.1 vs. uniprot
Match: D7FXR2_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR2_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.890e-29
Identity = 63/106 (59.43%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    1 TARRSGISLRYKEGLYFSSISGKANDYAVNSTKKGPRGRKWRCMFVCNVAAGKAFCTTEVGLPSDKCPPPGYDSVVGEVSPTGLNYDELVVYKEEAALPSYLIVYS 318
            TAR +   LRY  G+Y +S+SGKANDYA  S KK     + RCMFV +VA G  F TT   LP+D+CPPPGY SVVGE     LN+DE VVYKEEAALP++LIVY+
Sbjct:  322 TARATRFPLRYGAGIYLTSVSGKANDYASRSAKKVGE-LELRCMFVASVALGNTFKTTSARLPADQCPPPGYHSVVGEAGQR-LNFDEFVVYKEEAALPTHLIVYA 425          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5989.14495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS87_ECTSI5.820e-3970.75PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LKU8_ECTSI6.390e-3663.21PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LS88_ECTSI1.190e-3566.04PARP catalytic domain-containing protein n=1 Tax=E... [more]
D7FXR1_ECTSI2.430e-3561.32PARP catalytic domain-containing protein n=1 Tax=E... [more]
A0A6H5JBF5_9PHAE2.490e-3561.32PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LS86_ECTSI2.440e-3463.21PARP catalytic domain-containing protein n=2 Tax=E... [more]
D8LKU5_ECTSI7.710e-3466.04TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A813I6I7_POLGL1.830e-3161.68Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
D8LKU9_ECTSI3.060e-3060.38PARP catalytic domain-containing protein n=1 Tax=E... [more]
D7FXR2_ECTSI2.890e-2959.43PARP catalytic domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5989contigL-elsbetiae_contig5989:5969..6760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue1.1e-32
Seed eggNOG ortholog2880.D8LS87
Hectar predicted targeting categoryother localisation
EggNOG OGs28J37@1,2S14A@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPoly(ADP-ribose) polymerase, catalytic domain
Ec32 orthologEc-12_004130.1
Exons3
Model size332
Cds size330
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5989.14495.1prot_L-elsbetiae_contig5989.14495.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5989 5969..6760 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816649.6944735-CDS-L-elsbetiae_contig5989:5968..60671622816649.6944735-CDS-L-elsbetiae_contig5989:5968..6067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5989 5969..6067 +
1691683711.8611186-CDS-L-elsbetiae_contig5989:5968..60671691683711.8611186-CDS-L-elsbetiae_contig5989:5968..6067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5989 5969..6067 +
1622816649.7050984-CDS-L-elsbetiae_contig5989:6208..63431622816649.7050984-CDS-L-elsbetiae_contig5989:6208..6343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5989 6209..6343 +
1691683711.8738523-CDS-L-elsbetiae_contig5989:6208..63431691683711.8738523-CDS-L-elsbetiae_contig5989:6208..6343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5989 6209..6343 +
1622816649.7174902-CDS-L-elsbetiae_contig5989:6664..67601622816649.7174902-CDS-L-elsbetiae_contig5989:6664..6760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5989 6665..6760 +
1691683711.8846278-CDS-L-elsbetiae_contig5989:6664..67601691683711.8846278-CDS-L-elsbetiae_contig5989:6664..6760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5989 6665..6760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5989.14495.1

>prot_L-elsbetiae_contig5989.14495.1 ID=prot_L-elsbetiae_contig5989.14495.1|Name=mRNA_L-elsbetiae_contig5989.14495.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
TARRSGISLRYKEGLYFSSISGKANDYAVNSTKKGPRGRKWRCMFVCNVA
AGKAFCTTEVGLPSDKCPPPGYDSVVGEVSPTGLNYDELVVYKEEAALPS
YLIVYSYLK*
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mRNA from alignment at L-elsbetiae_contig5989:5969..6760+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5989.14495.1 ID=mRNA_L-elsbetiae_contig5989.14495.1|Name=mRNA_L-elsbetiae_contig5989.14495.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig5989:5969..6760+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGCGCGGAGGAGTGGCATCTCCCTGCGCTACAAAGAGGGCCTCTACTT CAGCAGCATTTCTGGCAAGGCTAACGACTACGCCGTGAACTCCACGAAGG TATCAATGGAGGCGCATTTTAGCGTTGCTCGTGCTGGTGTCAATGCCTTC GCTGGTGCTGCTGGTGCTGCTGCTGGTGCTGCTGCTTCTTACCTACGTAC GATCTCTCTCTATCAATTTTCTCCCCGACCGGTCTTGCAGAAGGGCCCCC GCGGCAGGAAGTGGAGGTGCATGTTCGTCTGCAATGTCGCCGCCGGCAAG GCGTTCTGCACGACGGAAGTGGGACTCCCGTCCGACAAGTGCCCCCCGCC AGGCTACGACTCGGTAGTGGGAGAGGTGAGCGTGTTTTGCAGGGGACGAG CGTTTGGATTGTTTTTGGTGGTGCCTTGCTCTTCTGGCGTGGTCGCAAGA TAAAATGACGGCGCGCCACGCTGCGACGTAGCTATGCGAAGACGGCGAGT GTCAAAGCGACGGGGAGCGCGACGACGCCTGTAGCTTGGCCCGCTTGCAA CAGAGCGGTAACGACGGCGCTTGTAGCGCGGCTTATATGTAGCTTAACCG TAAAAATGTGTTGGAGGTGTTGCGTCAGTATCGTACCCACTTTCTGCGTG TGTACCAACCCTGATCCTCCTTTTCTTATTCGCGATCAAAATCAAGGTGT CCCCCACTGGGTTGAACTACGACGAATTGGTTGTGTACAAGGAGGAGGCC GCCCTGCCCAGCTACCTCATCGTCTACAGCTACCTTAAGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5989:5969..6760+

>mRNA_L-elsbetiae_contig5989.14495.1 ID=mRNA_L-elsbetiae_contig5989.14495.1|Name=mRNA_L-elsbetiae_contig5989.14495.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig5989:5969..6760+ (Laminarionema elsbetiae ELsaHSoW15)
ACGGCGCGGAGGAGTGGCATCTCCCTGCGCTACAAAGAGGGCCTCTACTT
CAGCAGCATTTCTGGCAAGGCTAACGACTACGCCGTGAACTCCACGAAGA
CGGCGCGGAGGAGTGGCATCTCCCTGCGCTACAAAGAGGGCCTCTACTTC
AGCAGCATTTCTGGCAAGGCTAACGACTACGCCGTGAACTCCACGAAGAA
GGGCCCCCGCGGCAGGAAGTGGAGGTGCATGTTCGTCTGCAATGTCGCCG
CCGGCAAGGCGTTCTGCACGACGGAAGTGGGACTCCCGTCCGACAAGTGC
CCCCCGCCAGGCTACGACTCGGTAGTGGGAGAGAAGGGCCCCCGCGGCAG
GAAGTGGAGGTGCATGTTCGTCTGCAATGTCGCCGCCGGCAAGGCGTTCT
GCACGACGGAAGTGGGACTCCCGTCCGACAAGTGCCCCCCGCCAGGCTAC
GACTCGGTAGTGGGAGAGGTGTCCCCCACTGGGTTGAACTACGACGAATT
GGTTGTGTACAAGGAGGAGGCCGCCCTGCCCAGCTACCTCATCGTCTACA
GCTACCTTAAGTAAGTGTCCCCCACTGGGTTGAACTACGACGAATTGGTT
GTGTACAAGGAGGAGGCCGCCCTGCCCAGCTACCTCATCGTCTACAGCTA
CCTTAAGTAA
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