mRNA_L-elsbetiae_contig5988.14494.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5988.14494.1 vs. uniprot
Match: D7FMH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH0_ECTSI) HSP 1 Score: 833 bits (2151), Expect = 9.300e-278 Identity = 643/1279 (50.27%), Postives = 740/1279 (57.86%), Query Frame = 1
Query: 1 VFDVEFPPNGPLGITFEWAVDPAARWYGDGGTPVASPRTPPLGASTLPPISPSPTSKPTGHAAPPLELPVGPALLPHALRIQSFPALQPLESPRSVAPGAGTTSAGGGDSEISIDGETQPTAVTAVAIFQTFS-----AKGPRTSDE-----SHVSSADAEQS---------SPSKRTNTAEAKRTRAATSEPMGGAERFGPVAGRDVLRAGDTLVAVNGNPVAGPAARDAGTASFEDVVGVVAAATATSARAQTAEGP----QRKLPRVLKFRREARLEGPTPPAVVASSSPPRDGPSKGGWVRGMSGSEPAPRSSSSGETAERGTANQAVASDIGIN--VAAAXXXXXAAPLPPTSSWSTLYPVLQLKGWGRAPGVPRGGRTAQETAQGTSKEPGGGRLPAPLSSRLRGSETSSIGTDGLSALGSSRSRVSASSRGSDASFVSNTSSKASGILRRRKRGRERKGKAGGSSTVFSPSSAAARIKADAKRGEALLEPLVCPRQQRLKNILEESSVLRPLSVRLTNLSYWYQQRRLLGGFRHMHRRAEYDPRSKRWEASTYMLGDRPSDGKLVPILTPIKPAAGTIISTEGQALALAAKSVKKRDANPGAARGPKPPGMTQFTMLQTHISVLVVSHVFEGLSHADRLALVFTALHDELAATSPPPXXXXXXR--------PSSPSXXXXXXXXXXVPLSTATPIAPKAKPG--QDPPATEGSERREE---GASAGVLDSDDQSTGAGGGSPPH-----AGGDEAGDPGEGNGASTSAGRPSGAAPTPSDG--LPGNSADSGAAAQ--PSGEDHGGEEERRTENSRWRQRQRQPPRQHHTIRGGVKASYVGPNVEALPVWGALDAIAGSALLVDCRTPAQWRADEHRPTAQ-----------------------------ELWGPARSGHRTLANSIRVGEAAVKSGMERIIAESKLLREAAPKFEHFDRFGEGAGTGGXXXXXXXXDVSGRKGGGPAGSPIASPRAHHGSAAPALVTKAGRGVDRTHPHFFHGLGPNARKLFMELYAENRSRLLAPISRNATADSVAPSSISSGQEQRPEKASSAAPPDGSSL-----------LSLISGSQQT------------SPRSVTGSLGTGPGXXXXXXXXXXXXXXXXXXXXXXHAXGAFAAAGPPPDLDAGIMDRYGVLLGRLTEAVLRIQRTRRLGGLPRAARRLRRRQRAALAAQRVFRGHLGRRYASIWKAVSALASTRLSAGWRRFVAQREFLVFRARARAGAIGLQ 3540
+F+V FPP GPLGITFEWAVD AA V P PP + TL + + Q SPR A TT G + GE QP A T+ + + +G R S E S + S D S S R T+ TR T+E GGAE FGP AGR++LR GD LV VNG PVAG AARDAG SFED VGVVAAATA + A G R+ PRVLKFRRE R + P+ +V PRD PSKGGWV G+ G A SSSG E+ T + S G+ ++ L+PVLQ+KG G+ P + G + TA E G G +P SSR R S+ SS+ DGLSAL S RSR S S+GS++SF S +SK G+ R RKRG + + +AGG S F +S A RIKA+A+RGEALLEPLVCPRQQ LKNILE S L+PL+VRLTNLSYWYQQRRLLGG RHMHR A +DPR+KRWEAS YMLGDRPSDGKLVPILTPIK + GT IST+GQALA+AAKS K+RDANPGA RGPKPPGMTQ TMLQTHIS+LVVS F GLSHADRLALVFT LH+ELAA++ PP PSS + TAT + P + G +DP + ++ R G S D+S A G P AGG+ GE G+ G S+G LP +A + P G D +EERR + R RQR+R H IRG VKAS+VG NVE LPVWGALDAIAGS+LLVDCRTPAQWRA+ PT Q ELWGPARSGHRTLAN+ RV E AV+S MERIIAESK LREAAPKFEHFDRFGE + G +K GG + P + A PA TKAGR THPHFFHGLGPNARKLFMELY ENRSRLLAPISR + VA SSG+ +++ APPDG+SL LS+ QQ SPRSV+GS XXXXXXXXXXX HA GAFAA+GPPPDLDAG++DRYGVLLGRL EA RIQR RRLGGLPRAARRL RRQRA LA QRVFRGHLGR YAS+WK V+ LA+TRLSAGWRRF QR+FL FRARARAGAIGLQ
Sbjct: 58 IFEVIFPPTGPLGITFEWAVDRAA---------VVRPALPPT-SQTLDDDEDYTSRR------------------------------QETTSPRLARARATTTETG--HDTVPHSGERQPLAATSGSGEELLRDGLGLPRGRRLSQEHDRTKSGLPSTDTSNGAVSGPLLDKSHSMRAVTSLNGTTRE-TAERQGGAEAFGPAAGREILRPGDILVEVNGMPVAGDAARDAGIVSFEDAVGVVAAATAARSPTPEAHGQLDAAARQRPRVLKFRREGRGQRPSSASVTLLLPSPRD-PSKGGWVNGIPGGGSAGSRSSSGTVTEQDTTGLSSRSAHGLESKISNPADSSEXXXXXXXXXXXXLHPVLQVKGVGQVPHMAAGDPGDKNTAGSWIGEKGMGEIPL-ASSRSRASDASSVDMDGLSALSSLRSRSSVRSKGSESSFNSRATSKTGGVPRSRKRGGKER-QAGGRSGAFQSTSTAERIKAEARRGEALLEPLVCPRQQLLKNILETSETLQPLAVRLTNLSYWYQQRRLLGGARHMHRGAVFDPRTKRWEASVYMLGDRPSDGKLVPILTPIK-SVGTTISTKGQALAIAAKSAKERDANPGAVRGPKPPGMTQLTMLQTHISILVVSDAFTGLSHADRLALVFTTLHNELAASARPPPSLPDNSTNAFSSPLPSSNTPPSSLLSPATKAKKTATALTPDSVEGGRRDPSVADEADDRSNARRGVSVQSPGYHDESKRAAAGRPHSIRVVAAGGER--QVGEEKGSXXXXXXXXGGRNDVSNGGRLPVGTASPSSVHPIIPIG-DINSQEERRKDGDR-RQRRR-----HRVIRGNVKASFVGQNVEGLPVWGALDAIAGSSLLVDCRTPAQWRAETFPPTQQDRCLVHRQGPGALYVHSRSHINEKEERFEELWGPARSGHRTLANNPRVKEGAVRSTMERIIAESKALREAAPKFEHFDRFGE---SNGDADQTKGNPPPPKKSGGESHGAGHQPNTNPSVATPA-ATKAGR----THPHFFHGLGPNARKLFMELYTENRSRLLAPISRRSA--DVAGPVASSGRHL----SAAPAPPDGTSLPSPTTARNGSQLSISRQQQQQLHEKTPPREEGKSPRSVSGSFAA----------XXXXXXXXXXXENVRHAAGAFAASGPPPDLDAGVLDRYGVLLGRLVEAATRIQRERRLGGLPRAARRLWRRQRAVLAVQRVFRGHLGRSYASMWKVVAVLAATRLSAGWRRFSTQRKFLAFRARARAGAIGLQ 1256
BLAST of mRNA_L-elsbetiae_contig5988.14494.1 vs. uniprot
Match: A0A6H5KC52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC52_9PHAE) HSP 1 Score: 774 bits (1998), Expect = 5.550e-255 Identity = 631/1318 (47.88%), Postives = 732/1318 (55.54%), Query Frame = 1
Query: 1 VFDVEFPPNGPLGITFEWAVD----------PAARWYGDG-----------------GTP-------------VASPRTPPLGASTLPPISPSPTSKPTGHAAPPLELPVGPALLPHALRIQSFPALQPLESPRS-VAPGAGTTSAGGGDSEISIDGETQPTAVTAVAIFQTF------------------SAKGPRTSDESHV----SSADAEQSSPSKRTNTAEAKRTRAATSEPMGGAERFGPVAGRDVLRAGDTLVAVNGNPVAGPAARDAGTASFEDVVGVVAAATATSARAQTAEGPQR-----KLPRVLKFRREARLEGPTPPAVVASSSPPRDGPSKGGWVRGMSGSEPAPRSSSSGETAERGTANQAVASDIGINVAAAXXXXXAAPLPPTSSWSTLYPVL--QLKGWGRAPGVPRGGRTAQETAQGTSKEPGGGRLPAPLSSRLRGSETSSIGTDGLSALGSSRSRVSASSRGSDASFVSNTSSKASGILRRRKRGRERKGKAGGSSTVFSPSSAAARIKADAKRGEALLEPLVCPRQQRLKNILEESSVLRPLSVRLTNLSYWYQQRRLLGGFRHMHRRAEYDPRSKRWEASTYMLGDRPSDGKLVPILTPIKPAAGTIISTEGQALALAAKSVKKRDANPGAARGPKPPGMTQFTMLQTHISVLVVSHVFEGLSHADRLALVFTALHDELAATSPPPXXXXXXRP---SSPSXXXXXXXXXXVPLSTA-----TPIAPKA-KPGQDPPA----TEGSERREEGASAGVLDSDDQSTGAGGGSPPHAGGDEAGDPGEG---------------------------NGASTSAGRPSGAAPTPSDGLPGNSADSGAAAQPSGEDHGGEEERRTENSRWRQRQRQPPRQHHTIRGGVKASYVGPNVEALPVWGALDAIAGSALLVDCRTPAQWRADEHRPTAQELWGPARSGHRTLANSIRVGEAAVKSGMERIIAESKLLREAAPKFEHFDRFGEGAGTGGXXXXXXXXDVSGRKGGGPAGSPIASPRAHHGSAAPALVTKAGRGVDRTHPHFFHGLGPNARKLFMELYAENRSRLLAPISRNATADSVAPSSISSGQEQRPEKASSAAPPDGSSLLSLIS---GSQQT------------------------SPRSVTGSLGTGPGXXXXXXXXXXXXXXXXXXXXXXHAXGAFAAAGPPPDLDAGIMDRYGVLLGRLTEAVLRIQRTRRLGGLPRAARRLRRRQRAALAAQRVFRGHLGRRYASIWKAVSALASTRLSAGWRRFVAQREFLVFRARARAGAIGLQV 3543
+FDV FPP GPLGITFEWAVD P ++ D G+P V + R LG+STLPPI+ SP+S P +AA P + P P +PHALRIQ FP L P E+ S A GTT+ G D+ + GE QP A T + + F + G ++D S+ S D S P++ TN T T+E GGAE FGP AGR++LR GD LV VNG PVAG AARDAG SFED VGVVAAATA + A A G QR + P VLKFRRE R + P+ + PR PSKGGWV G+ G A SSSG E+ T + + S G+ XX Q+KG G+ P + G + T G E G G +P SSR R S SS+ DGLSAL S RSR SA S+GS++SF S +SK G+ R RKRG + + +AGG S VF +S A RIKA+A+ YQQRRLLGG RHMHR A +DPR+KRWEAS YMLGDRPSDGKLVPILTPIK + GT + T+GQALALAAKS K+RDANPGA RGPKPP MTQ TML+THIS+LVVS F GLSHADRLALVFT LH+ELAA++ PP R SSP +P +T T +AP A + G+ + T+G G S D+S AG G P H G+ E N S G P G A S S P+G + EE + + R R+R H IRG VKAS+VGPNVE LPVWGALDAIAGS+LLVDCRTPAQWRA+ + PT QELWG ARSGHRTLAN RV E VKS MERIIAESK+LREAAPKFEHFDRFGE G + GG + P + AAPA TKAGR THPHFFHGLGPNARKLFMELY ENRSRLLAPISR + AD P ++S P + APPD +SL S + GSQ + SPRSV+GS XXXXXXXXXXXXXXX X FAA+GPPPDLDAG++DRYGVLLGRL EA RIQR RRLGGLPRAARRLRRRQRA LA QRVFRGHLGRRYAS+WK V+ LA+TRLSAGWRRF AQR+FL FRARARAGAIGLQV
Sbjct: 58 IFDVTFPPTGPLGITFEWAVDRTAVVHPALPPTSQTLDDDEDDTSRRQAGQDSAGILGSPSVGCKQREPPDVAVVTARATVLGSSTLPPITSSPSSAPKENAARPADAPSAPVSIPHALRIQRFPLLPPQETTSSRFAWARGTTTETGHDT-VPHSGERQPLAATGESGEELFRDGLGLPSGRRLPQEHDRTKSGLPSTDTSNGVVNGSLLDKSHSMPAE-TNL---NGTTRETAERQGGAEVFGPAAGREILRPGDILVEVNGMPVAGAAARDAGIVSFEDAVGVVAAATAARSPAPEAHGQQRDAAARQRPLVLKFRREGRGQRPSSASDTLLLPSPRY-PSKGGWVNGIPGGGSAGSRSSSGTVTEQDTTDSSSRSARGLETKICDPAXXXXXXXXXXXXXXXXXXXXPQVKGVGQVPHMAAGDPGDKNTPGGWIGEMGRGEIPL-ASSRSRASGASSVDMDGLSALSSLRSRSSARSKGSESSFNSRATSKTGGVPRSRKRGGKER-QAGGRSGVFQSTSTAERIKAEAR----------------------------------------YQQRRLLGGARHMHRGAVFDPRTKRWEASVYMLGDRPSDGKLVPILTPIK-SVGTTVLTKGQALALAAKSAKERDANPGAVRGPKPPMMTQLTMLETHISILVVSDAFTGLSHADRLALVFTTLHNELAASAHPPPSLPDVRTNAFSSPLPFSNTPPSSLLPQATKAKKTPTALAPDAVEEGRGDHSVADGTDGRPNARRGVSVQSPGHHDESNRAGAGRP-HGVAVGTGEKSERVVAAGXXXXXXXXXXXXXXXXIEEGGRNDVSNGRGLPVGTA----------SLSSVHPVIPTGGINSQEERGKDGDQRQRRR-------HRVIRGNVKASFVGPNVEGLPVWGALDAIAGSSLLVDCRTPAQWRAETYPPTEQELWGAARSGHRTLANHPRVKEGIVKSTMERIIAESKVLREAAPKFEHFDRFGESNGDADQTKGNPPPPTTS---GGQSDGAGHQPNTNPAVAAPA-ATKAGR----THPHFFHGLGPNARKLFMELYTENRSRLLAPISRRS-ADVAGP--VASSGRHLPV---APAPPDCTSLPSPTTARNGSQLSISWQQXXXXXXXXXXXXXXREKVKSPRSVSGSFAX----------XXXXXXXXXXXXXXXXXXXXFAASGPPPDLDAGVLDRYGVLLGRLVEAATRIQRVRRLGGLPRAARRLRRRQRAVLAVQRVFRGHLGRRYASMWKVVAVLAATRLSAGWRRFSAQRKFLAFRARARAGAIGLQV 1284
BLAST of mRNA_L-elsbetiae_contig5988.14494.1 vs. uniprot
Match: A0A6U4LQX9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4LQX9_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 2.350e-17 Identity = 70/174 (40.23%), Postives = 96/174 (55.17%), Query Frame = 1
Query: 1366 AARIKADAKRGEALLEPLVCPRQQRLKNILEESSVLRPLSVRLTNLSYWYQQRRLLGGFRHMHRRAEYDPRSKRWEASTYMLGDRPSDGKLVPILTPIKPAAGTIISTEGQALALAAKSVKKRDANPGAARGPKPPGMTQFT-MLQTHISVLVVSHVFEGLSHADRLALVFTAL 1884
AAR DA++ +E P Q +L+ LE+S +LRP+ VRL N SYWY+QR LGG RHM R + +S RWE + G DG P L ++ T ++ E +AL K+ + RDANP P M + +L TH VL+VS VFE ++H +RL LV+ AL
Sbjct: 72 AARETEDAEKKRKAMEAAFAPVQLQLQETLEKSRLLRPMRVRLKNESYWYRQRADLGGARHMFRGVTLNEQSNRWEGRLFRTGISEEDGGKEPQLRFLE---NTYLN-ELKALKEVEKAARTRDANPSEQSIDGLPTMKDASRILATHFRVLLVSPVFEEMTHTERLELVYEAL 241 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5988.14494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5988.14494.1 >prot_L-elsbetiae_contig5988.14494.1 ID=prot_L-elsbetiae_contig5988.14494.1|Name=mRNA_L-elsbetiae_contig5988.14494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1185bp VFDVEFPPNGPLGITFEWAVDPAARWYGDGGTPVASPRTPPLGASTLPPIback to top mRNA from alignment at L-elsbetiae_contig5988:2850..10569+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5988.14494.1 ID=mRNA_L-elsbetiae_contig5988.14494.1|Name=mRNA_L-elsbetiae_contig5988.14494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7720bp|location=Sequence derived from alignment at L-elsbetiae_contig5988:2850..10569+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5988:2850..10569+ >mRNA_L-elsbetiae_contig5988.14494.1 ID=mRNA_L-elsbetiae_contig5988.14494.1|Name=mRNA_L-elsbetiae_contig5988.14494.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=7110bp|location=Sequence derived from alignment at L-elsbetiae_contig5988:2850..10569+ (Laminarionema elsbetiae ELsaHSoW15)back to top |