mRNA_L-elsbetiae_contig586.14323.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig586.14323.1
Unique NamemRNA_L-elsbetiae_contig586.14323.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig586.14323.1 vs. uniprot
Match: D8LBT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT6_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 6.600e-70
Identity = 150/242 (61.98%), Postives = 185/242 (76.45%), Query Frame = 1
Query:  136 SCRRDVRDLRRQCQRLSQGNEELKSSADAARVEACASKRRAAAAEQELEAERKVGAQLRRIRDTLQVAAASDKKSIARLQAELCKGALSSRLLDRARCLKQAVEKLEGRSNAQALALSAKTAELEGSRREARAIAVALGARTGTPSPGCGFNKRPVTVDELMEIGRAKLMNHDLALEMSRLSETSETLATEKQELEERLSQESAEVKRSRAEAAKARGMFERXXXXXXXXXXXASKANASAR 861
            SCRR+VR+LR QC++LS  N+ELK +ADA R EACAS+RRA AA++ELEAERK G  LRR+RD LQVAAA+D+KSI RLQ +LCKG+ SSRLLD+ARCLK+ VE+LE +S  QA ALSAKTAELE SRREARA+A ALG R    S   G    PVTVDEL+E+GRAKLMNHDLAL M+RLSE S  LA+EKQELE+ L +++AE++R +A+  + +G  ER           A++ANAS R
Sbjct:    9 SCRREVRELRLQCRKLSSSNDELKLAADARRKEACASRRRADAAQKELEAERKSGVVLRRVRDALQVAAAADRKSIDRLQGQLCKGSPSSRLLDKARCLKRTVEELESKSTEQAEALSAKTAELEASRREARALAAALGVRAEKASLA-GVATGPVTVDELLEVGRAKLMNHDLALGMARLSEASGVLASEKQELEDLLVKKTAEIERCKAQTTEVQGELERERKVADGHRAAAAEANASTR 249          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig586.14323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBT6_ECTSI6.600e-7061.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig586contigL-elsbetiae_contig586:18648..23738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size865
Cds size747
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig586.14323.1prot_L-elsbetiae_contig586.14323.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig586 18765..23738 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.8368545-UTR-L-elsbetiae_contig586:18647..187641622816632.8368545-UTR-L-elsbetiae_contig586:18647..18764Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig586 18648..18764 +
1691683699.497786-UTR-L-elsbetiae_contig586:18647..187641691683699.497786-UTR-L-elsbetiae_contig586:18647..18764Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig586 18648..18764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.8487365-CDS-L-elsbetiae_contig586:18764..187931622816632.8487365-CDS-L-elsbetiae_contig586:18764..18793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig586 18765..18793 +
1691683699.5094738-CDS-L-elsbetiae_contig586:18764..187931691683699.5094738-CDS-L-elsbetiae_contig586:18764..18793Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig586 18765..18793 +
1622816632.8615623-CDS-L-elsbetiae_contig586:19627..197151622816632.8615623-CDS-L-elsbetiae_contig586:19627..19715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig586 19628..19715 +
1691683699.5236008-CDS-L-elsbetiae_contig586:19627..197151691683699.5236008-CDS-L-elsbetiae_contig586:19627..19715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig586 19628..19715 +
1622816632.875826-CDS-L-elsbetiae_contig586:19895..200291622816632.875826-CDS-L-elsbetiae_contig586:19895..20029Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig586 19896..20029 +
1691683699.5418525-CDS-L-elsbetiae_contig586:19895..200291691683699.5418525-CDS-L-elsbetiae_contig586:19895..20029Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig586 19896..20029 +
1622816632.8862906-CDS-L-elsbetiae_contig586:21929..220231622816632.8862906-CDS-L-elsbetiae_contig586:21929..22023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig586 21930..22023 +
1691683699.555575-CDS-L-elsbetiae_contig586:21929..220231691683699.555575-CDS-L-elsbetiae_contig586:21929..22023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig586 21930..22023 +
1622816632.8963325-CDS-L-elsbetiae_contig586:22689..228211622816632.8963325-CDS-L-elsbetiae_contig586:22689..22821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig586 22690..22821 +
1691683699.5704188-CDS-L-elsbetiae_contig586:22689..228211691683699.5704188-CDS-L-elsbetiae_contig586:22689..22821Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig586 22690..22821 +
1622816632.906281-CDS-L-elsbetiae_contig586:23258..233781622816632.906281-CDS-L-elsbetiae_contig586:23258..23378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig586 23259..23378 +
1691683699.587563-CDS-L-elsbetiae_contig586:23258..233781691683699.587563-CDS-L-elsbetiae_contig586:23258..23378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig586 23259..23378 +
1622816632.9208806-CDS-L-elsbetiae_contig586:23588..237381622816632.9208806-CDS-L-elsbetiae_contig586:23588..23738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig586 23589..23738 +
1691683699.5989878-CDS-L-elsbetiae_contig586:23588..237381691683699.5989878-CDS-L-elsbetiae_contig586:23588..23738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig586 23589..23738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig586.14323.1

>prot_L-elsbetiae_contig586.14323.1 ID=prot_L-elsbetiae_contig586.14323.1|Name=mRNA_L-elsbetiae_contig586.14323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=249bp
MAEADASCRRDVRDLRRQCQRLSQGNEELKSSADAARVEACASKRRAAAA
EQELEAERKVGAQLRRIRDTLQVAAASDKKSIARLQAELCKGALSSRLLD
RARCLKQAVEKLEGRSNAQALALSAKTAELEGSRREARAIAVALGARTGT
PSPGCGFNKRPVTVDELMEIGRAKLMNHDLALEMSRLSETSETLATEKQE
LEERLSQESAEVKRSRAEAAKARGMFERERTEADEQRAEASKANASARR
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mRNA from alignment at L-elsbetiae_contig586:18648..23738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig586.14323.1 ID=mRNA_L-elsbetiae_contig586.14323.1|Name=mRNA_L-elsbetiae_contig586.14323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5091bp|location=Sequence derived from alignment at L-elsbetiae_contig586:18648..23738+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGGAGAGAGGGAGATGGGGATATAAAACAAAAGAGCGCCTCCCTGCGT GTTGGATCCTCTCACCTTTCATCTGCCCGGCCACAAGGAGTTCACCCTCT TGATCGATCCTGATGAAATGGCCGAAGCAGACGCATCCTGCCGAAGGTGC GGCGTAATCCGCGCAACCAACTCATCGGCCTATATGCTGGATGCTGGCTG AGATGGCAGAAATATTATATCCCTTCTCTTTTCATGGTCACGACAGCACT ATCTTGCTGCTGTAGATGATGTGTGGTGCCCCTGGGAGGAAGTAAGAGGT GTTCAACCCAGCAGGACTCCCAAAGTATGTACACCTACATAGTCTATATA TCTAAGTAGATACAGTAGTATCTTATCTAGATGCGTACGGCGTACGCTGT GATTTGGTATCTCATCGGCCAGAGATATTGGCCGTTAGACTCCCCGGAAC CAAGCCAACTACGGTATATCAGGACACTTGAATAGGACCTGGTGGGAATG AGGCGCATCATTGGTTGGAAGGGTGGGCTCAGTTCATTACGTGGTAAGAA TAGTTGTACTGCATTTAGCATTGCTCGATTCGGCACAACACGAATTTGAC GTAAAACGTCATTCTCCCGAACCACGCTTTCTCACCATGTACCTACAGCC TACCCGTGTTGTAAATGGAGGCAAATTTATTTTAGCGCATGTTTTCAAGA GATCCAGAGAACCTTCCGTTCGGCTTTAATTCCGTTGTGAAAAGCCCTCT TTGCTATGTCAGCAGGGGAGAGGAGACTAAATTCGCCAGTCTGTCTGCCA AGTTTTATCTGGTGATGGGTGGTTTCCGGTGTGTGTGTTCTCGTGAGTGT TTTCTCCCATTTATTCGGGGACCAGGCTAAATTTTGTGGTATACGCTTGA CGTATCAGCCGGCGCCATACAGGAAGAAGGTCACATTCGCCGCGGTTTTT GCATCTTCGAACTTCTCGTGGTAACTGAAGGGATGTGCGAGACTTGCGGA GACAATGCCAGCGCCTCTCCCAGGGCAACGAGGAGCTCAAGTCTTCGGCA GATGCTGCCAGGGTGGAGGTGAGCGGTAGAGATAGTTTTCACGAGTTGAT TTGGCCGGCCACCATTTAGGTGCTGGTTGTACCCCGGTGTGGCCCTGTTG CTTGATTGCGGGTCGGGGTGTTTATCAGTTCAGGGGTTTTCCGCATTTCA TCGACCGCTGCTGTCTATCCCCCTACTCAGCAAAATACGTGCCTGCAGGC CTGCGCGTCAAAGAGGAGGGCTGCCGCCGCCGAGCAGGAGCTTGAGGCGG AGCGAAAAGTCGGGGCACAGCTGAGGAGGATTAGGGACACGCTGCAGGTG GCGGCGGCCTCGGACAAAAAGTCAATCGCAAGGTTAGGCCGCTAGAGTGT GGCAGCAGCAGCATGCGTGCAAGCGGCCTGTTGGTGCTGCGATATACATG CAGTACAACCACTTGGTATCTCCCGTTCCCCTCTCTACGTTATCCATGCC GTGTGGCCGGGAAGCACAGCTCTGATGAGGGAGCCGGAGGAGCTCTGACT TTAAAGGAGGCTCTCAGCACCCGGAGTTGCAAGAGCCCAGCCGAAGCTGC AGTACAGTGCTGCTCGCCGGTTCCAGGATTTCGATACGCAAAAACACGCC CCCCGGAAAGTGGTACAAATTCCACAATCCCACGTGCTTAGTTCTCTCTC CGCTACCCTACCGTCCACCAACGAACTTAGCGCACCTGATGATATACCGT AATCTACGCCGTCGCAGACTCCCCCCCATCACCTTTTCGGTCTGGGAGCA TGATTTATCTGTCGTAGCCCCGGGAAAGCATGGTTTTATCGCAAAACAAA ATCCCCCCCTGTTACATTCCCCACTTGACATGGTACGTTCACCACCAAGC AGCGTTCATTTGGGATGGAGTTTATAGCCTGTTGTCGACAGAACGGGTGC GTCGCTGCCCCCTGTCCCATTTGTTCTGCTGCTCGTAGACTTTGTGCATC TTGGTGTGTGTGTTTGTGTGTGTGTCGTTTTTTGGTTCTTCCCCCCGGGG TAGATATCCCCCGGGGTAGTGCCTACGAAAATAAAACAAATAAAATATCC CCCCTTACCCATTTAGCCCCCGGGTTAAGCGTCTTCGGGAATAATAACGA TCCCCTCCCGGGGCTACGACGGCGTAGATTACGGTCCTGCTGCGATAGTT CTCTGTGCTATCTGTCTAGTAACCCATGCTCGTGAAGTTTGACTCACAAT GGCCCAAGAACTCGTCGGAACAGACACACTCAGCGGGCCCGAAAAACGGC TGGCATCTTGGTTGTCGGTAGTCTGATTTCCAACTGAGTACAACAACTCA TCGTAGGCACCACCGATCGACATGATATTTGACACATAGACTAAATGTGC CATGAGAAAATAGCACCGAAAGTGGCGCGTCGAAACGCGTGCAGCAGCAG TCACGAGGGATAATTTTCTCGGAAAAATACCGTTTGCGCGCAGGCAGCAT CCTTATCTTCCTGCACACGGTTTTGGCGAGGAGTACAAGCATCTGTCGGA AGGGCTTCTTGCAATTGCACAGCACTTTAAACTTTTCTGCAGCACCCAGT ATAGGCCGAGTACGCTCAATCAGCGCAAATCAATATTGAATATGCGCGCG CATATTGTATGTGGTCTCCGGACAAACTAAAAAATAGAGCGGACAAAAAA TGCTGTTAAGTGAAATATTGGTTCGCGCCGATTGCGCGTACTCGGCCTAT ACTGGGTGGGTGCTGCAGAAATTTTTGAAGTGCTGTGCAACCACAATAAG ATGCTTTTGCTCCTTCGCGAAACTGTTCGTAGGAAGATAAGCATGCCGCC TGCGCGCAAACGGCATTTTCCCAAGAAAACCGTGTCTCCCGACTGCTGTA TATGTGTTTCGACGCGCCACTTTCGGTGCTGAGTCGATACGGTACATTGA GTCTGCGTCTCAAATATCGTAACCATCGGTTCTGTCTGTGACGCGTTCTC GTCATCGGCTCATAATCACGTGGAGGCCACAGAGGTTGCCCCGCCCAAAA CCCTCAGCAGCCTATATTTATTTTTCACGGCGAGCAGCACTGAGTAGGGC CGGCTCGCCTTCCTCCAGCCCTCTTTTCCCTTTCCCCTCTCCTCTGGGCA CCCGAAACATTCATATTTCTGCTGGCACGCGCCCTTAACAGTGGCAAGTA CCCGACGGGGCTCTTCTCACCCTCTAGCTCTCCCCAATGCGTTCATGATC GCTGTTGTATCTGTTTCCAACCAAAACAAAAGGTTACAGGCGGAGCTGTG CAAGGGGGCGCTGAGCTCCCGCCTTCTGGACAGAGCGCGGTGCCTCAAGC AGGCCGTAGAGAAGCTTGAAGGCCGGGTACGTTGCTCCTGCCTTCTCGAA GCCAGCTCTCTTTCTCTCTATGTAGAAGTATATACTTGGTAAACTTAGAT ATATCTCTGTACACGATTCACCCGTCCATCTCCAATGCTCTCTTTGTCAG CAACGCTCCAATGTGGTCCAATGTAGCATGATACCAACTCCGGCCTGCTC TCGCAAAACGTTGCTATTGTGCTCGAACTGCGTAGGTATTAGATGAAAAT TAGAAATGGTGGCGGCCTGCGCGTGCAGGAGGCTTCTCTCGTGGGCTTCG GTTCCTTCGTTGTTCTCTAGTACAGATCTTCGCCGTACATTTGCGATGGT TGCACACATCACCATTCAACCTATCACGCTCTGCAAAGCGGTCTCTCTCC AGAGCGATTTCTGCAGAGCGACAACACGGCGTGAAGATGAGCGTAATGCT CTACCTCCATCGTGTTTGGAGATAACACGTGACATTGTGCGCCCCTTTTA GTTTGACTCAGGGGGATACAGAACGCGTGGACATGAAATCGGCAGCAACC AACCGCAGCCAGCCCTCACACCACACCGCGCCACCCACCGTGCAAACCTC GCCTACTCCATCATGCAACACTAGACGATCGAATGGCGAGTTGCTCTCAT GCCCGCCCGTCCACACACCCTTCCCTTCCTTCCTTTCGATAGTCGAACGC GCAGGCCTTGGCTCTCAGCGCCAAGACAGCGGAGTTGGAGGGCTCGAGGC GAGAGGCAAGGGCGATAGCGGTGGCCCTCGGGGCCAGAACGGGGACGCCA TCACCGGGTTGTGGCTTCAACAAAGTGAGCACCGCTCTCGCGAGTGCGCT CTCTCTGTCGTTGGCGGTGTTGTCGTTGTTGGTAATGTTTTTCCTTCGAA TATTGTAGCCGCTCCTTAGCTCGTCTCTCTTCGCGCCTCCTTATGGCAGC AGCTAGGCAGGTAGCGGTTGTCCTACCATTCGGCTCCGGCAGAGTAGGCC GTCAAGCCGTCAAATGTTTTCCTCCCTCTCTCTAGTACGCCACTCTCACC GCCGTCCAGAGGGAAAATTTCCTTGCTTTTTAAGGCCCCAGAAAACCCGT GCCCTCGTCACGCTGCTGTTAGTTAGCGGCTGTCTTTTTACTTTTATCCC ATCCCCCACCCCTCAGCCTTCGATTTCAGCCCGAGCGACCACCGGCTGTA GACACGACGGTACGACAACTCGATCGCGGCGCTACTGCTATGTATGTGTT TTTTTGTGCAGAGACCCGTCACCGTGGACGAGCTGATGGAGATCGGCAGA GCAAAGCTGATGAACCACGACCTGGCGTTGGAGATGTCGCGCCTGTCCGA GACGTCGGAGACTCTCGCCACAGAGAAGCAGGTATGAGCAGGGGCGCAAT TTTCACGTCCTTGTCGTGAATTCATTTGGTGTTACCAAGATCCATGTCCG GGTGCTGCTGTGGTTGATTGATCGTGGTGTCGGGGTGTTAGTGCTTCGTT TTGCGGTCGTACACGTCCAGCCAACCACTACCCGCTGCTTAAGCTTCTCT GCCGCTGTCAAATGTGTTGTCGTGCGTTCCGGCAAGCGAAGGAGCTAGAG GAGCGGCTGTCACAGGAGTCAGCGGAGGTGAAGCGGAGTCGGGCCGAGGC TGCAAAGGCCCGAGGGATGTTTGAGCGAGAGAGAACAGAGGCGGACGAAC AGCGCGCGGAGGCGTCCAAGGCAAACGCTTCCGCCAGGCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig586:18648..23738+

>mRNA_L-elsbetiae_contig586.14323.1 ID=mRNA_L-elsbetiae_contig586.14323.1|Name=mRNA_L-elsbetiae_contig586.14323.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1494bp|location=Sequence derived from alignment at L-elsbetiae_contig586:18648..23738+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGAAGCAGACGCATCCTGCCGAAGATGGCCGAAGCAGACGCATCC
TGCCGAAGGGATGTGCGAGACTTGCGGAGACAATGCCAGCGCCTCTCCCA
GGGCAACGAGGAGCTCAAGTCTTCGGCAGATGCTGCCAGGGTGGAGGGAT
GTGCGAGACTTGCGGAGACAATGCCAGCGCCTCTCCCAGGGCAACGAGGA
GCTCAAGTCTTCGGCAGATGCTGCCAGGGTGGAGGCCTGCGCGTCAAAGA
GGAGGGCTGCCGCCGCCGAGCAGGAGCTTGAGGCGGAGCGAAAAGTCGGG
GCACAGCTGAGGAGGATTAGGGACACGCTGCAGGTGGCGGCGGCCTCGGA
CAAAAAGTCAATCGCAAGGCCTGCGCGTCAAAGAGGAGGGCTGCCGCCGC
CGAGCAGGAGCTTGAGGCGGAGCGAAAAGTCGGGGCACAGCTGAGGAGGA
TTAGGGACACGCTGCAGGTGGCGGCGGCCTCGGACAAAAAGTCAATCGCA
AGGTTACAGGCGGAGCTGTGCAAGGGGGCGCTGAGCTCCCGCCTTCTGGA
CAGAGCGCGGTGCCTCAAGCAGGCCGTAGAGAAGCTTGAAGGCCGGGTTA
CAGGCGGAGCTGTGCAAGGGGGCGCTGAGCTCCCGCCTTCTGGACAGAGC
GCGGTGCCTCAAGCAGGCCGTAGAGAAGCTTGAAGGCCGGTCGAACGCGC
AGGCCTTGGCTCTCAGCGCCAAGACAGCGGAGTTGGAGGGCTCGAGGCGA
GAGGCAAGGGCGATAGCGGTGGCCCTCGGGGCCAGAACGGGGACGCCATC
ACCGGGTTGTGGCTTCAACAAATCGAACGCGCAGGCCTTGGCTCTCAGCG
CCAAGACAGCGGAGTTGGAGGGCTCGAGGCGAGAGGCAAGGGCGATAGCG
GTGGCCCTCGGGGCCAGAACGGGGACGCCATCACCGGGTTGTGGCTTCAA
CAAAAGACCCGTCACCGTGGACGAGCTGATGGAGATCGGCAGAGCAAAGC
TGATGAACCACGACCTGGCGTTGGAGATGTCGCGCCTGTCCGAGACGTCG
GAGACTCTCGCCACAGAGAAGCAGAGACCCGTCACCGTGGACGAGCTGAT
GGAGATCGGCAGAGCAAAGCTGATGAACCACGACCTGGCGTTGGAGATGT
CGCGCCTGTCCGAGACGTCGGAGACTCTCGCCACAGAGAAGCAGGAGCTA
GAGGAGCGGCTGTCACAGGAGTCAGCGGAGGTGAAGCGGAGTCGGGCCGA
GGCTGCAAAGGCCCGAGGGATGTTTGAGCGAGAGAGAACAGAGGCGGACG
AACAGCGCGCGGAGGCGTCCAAGGCAAACGCTTCCGCCAGGCGAGAGCTA
GAGGAGCGGCTGTCACAGGAGTCAGCGGAGGTGAAGCGGAGTCGGGCCGA
GGCTGCAAAGGCCCGAGGGATGTTTGAGCGAGAGAGAACAGAGGCGGACG
AACAGCGCGCGGAGGCGTCCAAGGCAAACGCTTCCGCCAGGCGA
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