mRNA_L-elsbetiae_contig5804.14239.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5804.14239.1
Unique NamemRNA_L-elsbetiae_contig5804.14239.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5804.14239.1 vs. uniprot
Match: D7FGR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR2_ECTSI)

HSP 1 Score: 557 bits (1435), Expect = 6.380e-188
Identity = 367/708 (51.84%), Postives = 421/708 (59.46%), Query Frame = 1
Query:    1 MQPSDIHFAAVWPTAHDGTGRKVVVPFQCSLADASKTVGCLAA--QRHSPATSMSAIETSAVGSYCVFSTPTSTPPALIVVGTKSWSCAPSVFALIRRVQADLARDQVEFGYWQLRHLALRPETVALPPGSDDGSYAMPPRLFKEHDWDDEESETWEDEDMWSG-TVGADDLARPPATPESPRAAPPSHVVSKPQRYGEHLDHIELCRSSRDTDPPNVSATHTPKHEQGTSQVPVMQPDFIDENLIAQQXXXXXXXXXXXXXDPAPVGIGLAPVLVHRRTSQSVDHGGGGSPLV------PTQADASQGPDTLD------PSAEVGAKSPALLAVDVSPSSAKGEARGFQLPAAPSLPMLGKPAQEAPFDAAXXXXXXXXXXEAPTPVVAPXXAV------------AGGTGVE------------------VVGLTASPQGEAGVSAADEAANTTTTVSAAVSEDLAYVHRGSVLQSYGITGSVLVAASHGARARLRVTDRQGHIANLTANAAVAAENTASSVLPTREYLCKAGAVQPAGEPPKFLPTLMYRCSPAVKVLPVRVTCRLRSVGNSVLVSVQVIANPQLSQPLGGVSVLVNLPFSPRNEEGDVKSEPPATLKADRRMLEWALPLKIKPGGKLVAQARLSVDDAQVRLAAIPQTAPAMVRCHLLDSTFSSVELEMTATAEEGEQNVPGKVVKRCRVQCKQ 1989
            M P DIHFAAVWP A DG  RKV+VP QCSLA+AS+TVG L    ++  P    S IET A+G +CVFST TSTPPAL+VVGTKSW C+P VFA +RRVQ DLARD  +FG+WQLRHLA R E  +L P  DD SYAMPPRLF+  +WDDEESE+WEDE MWS  TV  D L    A P+  R   P  V    +  G  +    L  S  D       AT T +H  G +   +     + + L  +                 P G G    +V RR S   D G   SPL+      P  A A      LD      PSA+    SP L +   S S+   E  G Q  +A  L  L   + +  F+A           + P+ VV P   V             G TG++                    G TA  Q   G  A  E      TVSAAVSEDLAYVHRG  LQSYGITGSVLVAAS GARA++RVTD+QGHIA  TA   VA E  A ++  TREYLCK GAVQ  G PP+FLP LMYRCSPAVKVLPVRVTCRLR+ GN VLV VQVIANPQLS PL GV VLVNLPFSPR +EGDVKSEPPA+LK DR+MLEW LP  ++ GGK V QARLS D+ QVR+AAIPQTAPAMV+CHLLDSTFSSVELE+ A AEEG     G VVKRCRVQCKQ
Sbjct:    1 MLPGDIHFAAVWPAAPDGAARKVIVPLQCSLAEASRTVGNLVGLPRKQPPTPGASKIETLALGPFCVFSTSTSTPPALVVVGTKSWGCSPGVFAFLRRVQTDLARDPSDFGFWQLRHLASRVE-ASLHPAGDDASYAMPPRLFEGRNWDDEESESWEDEYMWSDETVDNDGLTGATAVPDDARDMSPVPVSEPLRSDGVSMALSPLTVSQPDDANARTGATKT-EHTTGQADEGIPLNKMVFDGLPPKAPHRPTKPMTTDQRTQQPSGPGFGSPVVDRRPSPVGDRG---SPLLIPAEQAPALATAQPASPNLDADKLLPPSAKGAGFSP-LRSDGESSSATPDEVSGLQAVSAIDLSALTTSSMKGRFNAPVG--------DQPSTVVGPAAVVKETVDGARTGVPGGETGIQPAAEPHAISPQVDALAAAATGTTADLQDRVG-DAGPETEPDNATVSAAVSEDLAYVHRGPDLQSYGITGSVLVAASCGARAQVRVTDKQGHIATATAYPNVAEEKPAMAIPSTREYLCKPGAVQHGGAPPRFLPALMYRCSPAVKVLPVRVTCRLRTAGNRVLVWVQVIANPQLSHPLSGVLVLVNLPFSPR-DEGDVKSEPPASLKMDRKMLEWVLPSGMQRGGKQVLQARLSADEGQVRVAAIPQTAPAMVKCHLLDSTFSSVELEVAALAEEGVAPAGGSVVKRCRVQCKQ 692          
BLAST of mRNA_L-elsbetiae_contig5804.14239.1 vs. uniprot
Match: A0A6H5JKK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKK0_9PHAE)

HSP 1 Score: 436 bits (1120), Expect = 1.330e-141
Identity = 301/596 (50.50%), Postives = 348/596 (58.39%), Query Frame = 1
Query:  310 DQVEFGYWQLRHLALRPETVALPPGSDDGSYAMPPRLFKEHDWDDEESETWEDEDMWSG-TVGADDLARPPATPESPRAAPPSHVVSKPQRYGEHLDHIELCRSSRDTDPPNVSATHTPKHEQGTSQVPVMQPDFIDENLIAQQXXXXXXXXXXXXXDPAPVGIGLAPVLVHRRTSQSVDHGGGGSPLV--PTQA---------DASQGPDTLDPSAEVGAKSPALLAVDVSPSSAKGEARGFQLPAAPSLPMLGKPAQEAPFDAAXXXXXXXXXXEAPTPVV------APXXAVAGGTGVE------------------VVGLTASPQGEAGVSAADEAANTTTTVSAAVSEDLAYVHRGSVLQSYGITGSVLVAASHGARARLRVTDRQGHIANLTANAAVAAENTASSVLPTREYLCKAGAVQPAGEPPKFLPTLMYRCSPAVKVLPVRVTCRLRSVGNSVLVSVQVIANPQLSQPLGGVSVLVNLPFSPRNEEGDVKSEPPATLKADRRMLEWALPLKIKPGGKLVAQARLSVDDAQVRLAAIPQTAPAMVRCHLLDSTFSSVELEMTATAEEGEQNVPGKVVKRCRVQCKQ 1989
            D  +FG+WQLRHLALR E  +L P  DD SYAMPPRLF+  +WDDEESE+WEDE MWS  TV  D L    A P+  +   P   VS+P R       +     S+  D   ++     +H  G +   V       + L  +                 P G G    +V RR S     G  GSPL+  P QA         +A+   D L P + +GA    L +   SPS+   E  G Q  +A  L  L   + E  F+A             PT VV      AP     G TG++                    G  A  Q   G S A+   +    VSAAVSEDLAYVHRG  LQSYGITGSVLVAAS GARA++RVTD+QGHIA  TAN  VA E  A +V PTREYLCK GAVQ  G PP+FLP LMYRCSPAVKVLPVRVTCRLR+ GN VLV VQVIANPQL QPL GVSVLVNLPFSPR +EGDVKSEPPATLK DR+MLEW LP  ++ GGK V QARLS D+ QVR+AAIPQTAPAMV+CHLLDSTFSSVELE+ A A+EG     G VVKRCRVQCKQ
Sbjct:   32 DASDFGFWQLRHLALRVE-ASLSPAGDDASYAMPPRLFEGRNWDDEESESWEDEYMWSDETVDNDGLTGVTAVPDDAKDMSPV-PVSEPLRSDGVSMALSPLTVSQPEDANTLTGVTRTEHATGHADEGVSLNKMFFDGLPPKAPHRPTKPMMTDQRTQQPSGPGFGSPVVGRRPSPV---GYRGSPLLIPPDQAPALAMAQPANANVDADKLLPPSAMGAGFSPLRSDGESPSATPDEVSGLQGGSAVDLSTLTTSSMEGRFNAVVGDEPSTVVG--PTTVVKETVDGAPTGVPGGETGIQPAAEPHAISPQVDSLPAAATGTKAGLQDRVGDSGAETEPDNAM-VSAAVSEDLAYVHRGPELQSYGITGSVLVAASCGARAQVRVTDKQGHIATATANPNVAEEKPAIAVPPTREYLCKPGAVQHGGAPPRFLPALMYRCSPAVKVLPVRVTCRLRTAGNRVLVWVQVIANPQLPQPLSGVSVLVNLPFSPR-DEGDVKSEPPATLKTDRKMLEWVLPSGMQQGGKQVLQARLSADEGQVRVAAIPQTAPAMVKCHLLDSTFSSVELEVAALAKEGVAPAVGSVVKRCRVQCKQ 618          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5804.14239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FGR2_ECTSI6.380e-18851.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKK0_9PHAE1.330e-14150.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5804contigL-elsbetiae_contig5804:5515..9037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score568.2
Seed ortholog evalue5.2e-159
Seed eggNOG ortholog2880.D7FGR2
Hectar predicted targeting categoryother localisation
EggNOG OGs2E9RS@1,2SG2K@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_001180.1
Exons6
Model size1998
Cds size1998
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5804.14239.1prot_L-elsbetiae_contig5804.14239.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5804 5515..9037 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816624.5639036-CDS-L-elsbetiae_contig5804:5514..58201622816624.5639036-CDS-L-elsbetiae_contig5804:5514..5820Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5804 5515..5820 -
1691683693.5550845-CDS-L-elsbetiae_contig5804:5514..58201691683693.5550845-CDS-L-elsbetiae_contig5804:5514..5820Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5804 5515..5820 -
1622816624.5747385-CDS-L-elsbetiae_contig5804:6062..71321622816624.5747385-CDS-L-elsbetiae_contig5804:6062..7132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5804 6063..7132 -
1691683693.5668437-CDS-L-elsbetiae_contig5804:6062..71321691683693.5668437-CDS-L-elsbetiae_contig5804:6062..7132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5804 6063..7132 -
1622816624.586944-CDS-L-elsbetiae_contig5804:7360..76741622816624.586944-CDS-L-elsbetiae_contig5804:7360..7674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5804 7361..7674 -
1691683693.5767834-CDS-L-elsbetiae_contig5804:7360..76741691683693.5767834-CDS-L-elsbetiae_contig5804:7360..7674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5804 7361..7674 -
1622816624.6005392-CDS-L-elsbetiae_contig5804:8048..81751622816624.6005392-CDS-L-elsbetiae_contig5804:8048..8175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5804 8049..8175 -
1691683693.589745-CDS-L-elsbetiae_contig5804:8048..81751691683693.589745-CDS-L-elsbetiae_contig5804:8048..8175Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5804 8049..8175 -
1622816624.6134698-CDS-L-elsbetiae_contig5804:8707..88221622816624.6134698-CDS-L-elsbetiae_contig5804:8707..8822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5804 8708..8822 -
1691683693.6059961-CDS-L-elsbetiae_contig5804:8707..88221691683693.6059961-CDS-L-elsbetiae_contig5804:8707..8822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5804 8708..8822 -
1622816624.6259377-CDS-L-elsbetiae_contig5804:8971..90371622816624.6259377-CDS-L-elsbetiae_contig5804:8971..9037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5804 8972..9037 -
1691683693.621883-CDS-L-elsbetiae_contig5804:8971..90371691683693.621883-CDS-L-elsbetiae_contig5804:8971..9037Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5804 8972..9037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5804.14239.1

>prot_L-elsbetiae_contig5804.14239.1 ID=prot_L-elsbetiae_contig5804.14239.1|Name=mRNA_L-elsbetiae_contig5804.14239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=666bp
MQPSDIHFAAVWPTAHDGTGRKVVVPFQCSLADASKTVGCLAAQRHSPAT
SMSAIETSAVGSYCVFSTPTSTPPALIVVGTKSWSCAPSVFALIRRVQAD
LARDQVEFGYWQLRHLALRPETVALPPGSDDGSYAMPPRLFKEHDWDDEE
SETWEDEDMWSGTVGADDLARPPATPESPRAAPPSHVVSKPQRYGEHLDH
IELCRSSRDTDPPNVSATHTPKHEQGTSQVPVMQPDFIDENLIAQQQQQQ
QQQQQQQRRDPAPVGIGLAPVLVHRRTSQSVDHGGGGSPLVPTQADASQG
PDTLDPSAEVGAKSPALLAVDVSPSSAKGEARGFQLPAAPSLPMLGKPAQ
EAPFDAAAAAAAAAAGGEAPTPVVAPPAAVAGGTGVEVVGLTASPQGEAG
VSAADEAANTTTTVSAAVSEDLAYVHRGSVLQSYGITGSVLVAASHGARA
RLRVTDRQGHIANLTANAAVAAENTASSVLPTREYLCKAGAVQPAGEPPK
FLPTLMYRCSPAVKVLPVRVTCRLRSVGNSVLVSVQVIANPQLSQPLGGV
SVLVNLPFSPRNEEGDVKSEPPATLKADRRMLEWALPLKIKPGGKLVAQA
RLSVDDAQVRLAAIPQTAPAMVRCHLLDSTFSSVELEMTATAEEGEQNVP
GKVVKRCRVQCKQQG*
back to top

mRNA from alignment at L-elsbetiae_contig5804:5515..9037-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5804.14239.1 ID=mRNA_L-elsbetiae_contig5804.14239.1|Name=mRNA_L-elsbetiae_contig5804.14239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3523bp|location=Sequence derived from alignment at L-elsbetiae_contig5804:5515..9037- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCCAAGTGACATACACTTCGCTGCTGTCTGGCCTACTGCTCATGA TGGAACGGGGAGAAAGGTAAAGAGGGCGCACCATGTGATCGTGATGAGCT CCCACAACTTCGGGCGTTGCCTCGCTGAGAACATCGTCCTTGCTCAGAGC GATACCGGCTTCTTGCACGCCTCTAAGAACAGCCCATGTTGTAATGTGTT GCGTGCCTGCAGCAGGTAGTTGTACCATTCCAATGTTCCTTGGCAGACGC GTCGAAGACAGTCGGATGTTTGGCAGCTCAGCGTCACTCTCCTGCTACTT CCATGAGTGCGATCGAGACATCGGCAGTCGGTAAGTCCCCGGTCTTTGAG GAACAGTATTATTGCCCTTCGCTCTGCTCTCCTGTTCTGCTCTGCTCGTA TAAAGACTAGTTTTGTCTCCGTGCAAAATATTTAAAGACGCTGTATGGTA CACACTGCTGTGTGATGTTCGAATCAGAGAGTATGATAGTTAAAGAGTCA TATTCTTTGGTTCGAATATGTACGTTCGCGAAAGGGGTGCAACCAGGAAC ATCACCTGAAATAGCCCTACTTATATTACTGCTGTCGCACCCCTGCAGTC CGACCCGTTGTGCAGGCGCGCCATTGTCAATGGACAACGAAATTGGAGCA GATGCTCCTTCTTCCGTGTTCACATGATCTGTACGAAGTCATTACACAAC GCCGCACACCTGCTAGATATGACAGCAGAAGATATCCGGTTTTGAATGTG CCTCATGGTACGAGGGATTCCTCCAGTTTGCTCTGAACACAGAAATTTCG AAAGTTCAATCCGGAATCGTTGTATCTTCGCCCCATTCGGAATCGTGCTG AATATCACCAAGGCTCGTATTGCGTCTTCAGCACTCCAACCTCCACTCCC CCAGCATTGATCGTGGTGGGAACCAAAAGCTGGAGCTGCGCCCCGAGCGT CTTCGCCCTCATACGGCGTGTCCAGGCAGATCTTGCAAGGTATGGTGCAT CTTTTGCTTTGGCTTTCTTGGCACAGCCTTGCGACATGGGGGCGGGATAG CGAGCAGGAAAGCAAATGCGTACAGTTTTTTTGTGCGCGGCAGAAACTGT GGCTCTCCCTGAGCTGTCACCTGGCTACCTTTTTTGTGCGTCGAGCTGCA AGGCGCCCTCAGGCATTCGGTTGCAGCCACAGCACACCATGATAAGACGC GTCAAACGAAATCCCTAGCCTCAACTCGGAAACTCTAAGCTGGAATATCT CAAAGCACCGCACACGGCAGGCCCCTTTTCGTACAAGTACAAGTCGCATC GCCGAACGCACCCCACGGAGTCATCGTGATGTATATCATCGCTCCCCGAA CTTGCTGATGCAGAGACCAGGTAGAGTTCGGCTATTGGCAGCTGAGGCAC CTCGCTTTGCGCCCGGAGACGGTGGCACTGCCCCCTGGTAGCGACGATGG CAGCTACGCCATGCCCCCCCGGTTGTTCAAGGAGCACGACTGGGACGATG AAGAGAGCGAGACGTGGGAGGACGAAGACATGTGGTCCGGGACCGTGGGT GCTGACGACTTGGCGAGACCGCCTGCGACGCCGGAGAGCCCGAGAGCCGC CCCGCCGTCACATGTTGTTTCTAAGCCCCAAAGGTATGGAGAGCATTTAG ACCACATAGAGTTATGCCGTTCTTCCCGTTCACTGTCGTGTGTGGTGCCA ACGGAGAACCTCTGTAGGGTATCGTACATCATTCGGTTAGATATAATCAT GTCCGCACGAAGTACTGGAAAAGAAAGCTATCAAATCGCCGAGTGGCTCA TGCCTCCTCTCTCCCCCCGCCTTCGACGGATTTCCAGGAGCGATGAGCTG CTGGGAGGACTCTCGCCATGGGATGATTCACACACAAATGTCGACGCCCT GTCAGGGGACACCGACCCCCCGAACGTATCCGCAACACATACTCCCAAGC ACGAACAAGGCACTTCGCAAGTGCCCGTCATGCAACCAGATTTCATCGAC GAAAACTTGATAGCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA GCAGCGACGGGATCCGGCGCCTGTAGGAATTGGGCTTGCGCCGGTTTTAG TCCACCGAAGAACGTCTCAATCTGTGGACCACGGGGGCGGGGGCTCGCCA TTGGTTCCCACGCAAGCAGACGCGAGCCAGGGCCCAGATACTTTGGATCC TTCAGCGGAGGTGGGAGCGAAATCTCCAGCTTTGCTTGCCGTTGATGTTT CACCAAGCAGCGCAAAAGGTGAGGCCAGGGGGTTCCAATTACCAGCAGCA CCGAGTTTGCCAATGCTTGGGAAACCTGCGCAAGAAGCGCCGTTCGATGC TGCTGCTGCTGCTGCGGCGGCGGCGGCGGGAGGTGAGGCTCCCACTCCTG TTGTTGCCCCACCGGCGGCTGTGGCAGGGGGTACTGGAGTAGAGGTGGTC GGCCTCACTGCCAGCCCGCAGGGAGAAGCCGGCGTTAGTGCGGCGGACGA AGCAGCTAACACAACGACGACGGTTTCAGCGGCGGTAAGCGAAGACCTAG CTTATGTTCACCGGGGCTCTGTCCTCCAGAGCTACGGCATCACAGGATCC GTTCTGGTGGCGGCTTCCCACGGGGCCCGCGCTCGGTTGCGAGTCACGGA CAGGCAGGGGCACATCGCAAACTTGACAGCCAACGCAGCAGTCGCGGCCG AAAACACCGCGAGCAGCGTTCTGCCCACAAGAGAATACCTGTGCAAAGCT GGAGCGGTACAGCCAGCTGGAGAGCCGCCCAAGTTTCTTCCGACCCTCAT GTACCGGTGCTCCCCTGCCGTGAAAGTGCTTCCAGTCAGAGTCACCTGCC GCCTGAGAAGTGTGGGCAACAGTGTGCTCGTGTCGGTCCAAGTGATCGCC AACCCCCAGCTTTCGCAGCCCCTCGGCGGTGTGTCGGTGCTGGTCAACTT GCCGTTTTCGCCTCGAAATGAAGAGGTGAGGTTTTGGTTTCTCGTTGGAA GTAGACTTTTGGGAGCATTGCTTTTCGCAGGGCGAGGATCCATGACTGAT GTACTGGTGCAATTTTGGTGGCCTGATTGTGCGCCAACCCGCGCGCCCTG ATCCTGGTGTCGTGGCAAGCGAGCATTGACCGACCAGAAGGTCCCATGCG AGACCCCTGCTAACAAGACGCCTCCTTTTCGAAACCTTATTTTATGTCCT TAAACTTTTGTGGTCAGGGCGACGTAAAGTCTGAACCTCCAGCGACGTTG AAGGCGGATCGCAGGATGCTGGAGTGGGCGCTACCGTTGAAAATTAAGCC TGGGGGCAAGCTGGTCGCGCAAGCGCGGTTGAGCGTAGACGATGCGCAGG TGCGGTTGGCGGCCATTCCCCAAACCGCCCCGGCCATGGTGAGGTGCCAT TTGTTGGATTCTACGTTCTCATCTGTTGAGCTCGAGATGACGGCGACAGC AGAGGAAGGAGAGCAGAACGTCCCCGGGAAAGTCGTGAAGCGATGTCGGG TCCAGTGCAAGCAGCAGGGATAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5804:5515..9037-

>mRNA_L-elsbetiae_contig5804.14239.1 ID=mRNA_L-elsbetiae_contig5804.14239.1|Name=mRNA_L-elsbetiae_contig5804.14239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3996bp|location=Sequence derived from alignment at L-elsbetiae_contig5804:5515..9037- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCCAAGTGACATACACTTCGCTGCTGTCTGGCCTACTGCTCATGA
TGGAACGGGGAGAAAGATGCAGCCAAGTGACATACACTTCGCTGCTGTCT
GGCCTACTGCTCATGATGGAACGGGGAGAAAGGTAGTTGTACCATTCCAA
TGTTCCTTGGCAGACGCGTCGAAGACAGTCGGATGTTTGGCAGCTCAGCG
TCACTCTCCTGCTACTTCCATGAGTGCGATCGAGACATCGGCAGTCGGTA
GTTGTACCATTCCAATGTTCCTTGGCAGACGCGTCGAAGACAGTCGGATG
TTTGGCAGCTCAGCGTCACTCTCCTGCTACTTCCATGAGTGCGATCGAGA
CATCGGCAGTCGGCTCGTATTGCGTCTTCAGCACTCCAACCTCCACTCCC
CCAGCATTGATCGTGGTGGGAACCAAAAGCTGGAGCTGCGCCCCGAGCGT
CTTCGCCCTCATACGGCGTGTCCAGGCAGATCTTGCAAGGCTCGTATTGC
GTCTTCAGCACTCCAACCTCCACTCCCCCAGCATTGATCGTGGTGGGAAC
CAAAAGCTGGAGCTGCGCCCCGAGCGTCTTCGCCCTCATACGGCGTGTCC
AGGCAGATCTTGCAAGAGACCAGGTAGAGTTCGGCTATTGGCAGCTGAGG
CACCTCGCTTTGCGCCCGGAGACGGTGGCACTGCCCCCTGGTAGCGACGA
TGGCAGCTACGCCATGCCCCCCCGGTTGTTCAAGGAGCACGACTGGGACG
ATGAAGAGAGCGAGACGTGGGAGGACGAAGACATGTGGTCCGGGACCGTG
GGTGCTGACGACTTGGCGAGACCGCCTGCGACGCCGGAGAGCCCGAGAGC
CGCCCCGCCGTCACATGTTGTTTCTAAGCCCCAAAGGTATGGAGAGCATT
TAGACCACATAGAGTTATGCCGTTCTTCCCAGACCAGGTAGAGTTCGGCT
ATTGGCAGCTGAGGCACCTCGCTTTGCGCCCGGAGACGGTGGCACTGCCC
CCTGGTAGCGACGATGGCAGCTACGCCATGCCCCCCCGGTTGTTCAAGGA
GCACGACTGGGACGATGAAGAGAGCGAGACGTGGGAGGACGAAGACATGT
GGTCCGGGACCGTGGGTGCTGACGACTTGGCGAGACCGCCTGCGACGCCG
GAGAGCCCGAGAGCCGCCCCGCCGTCACATGTTGTTTCTAAGCCCCAAAG
GTATGGAGAGCATTTAGACCACATAGAGTTATGCCGTTCTTCCCGGGACA
CCGACCCCCCGAACGTATCCGCAACACATACTCCCAAGCACGAACAAGGC
ACTTCGCAAGTGCCCGTCATGCAACCAGATTTCATCGACGAAAACTTGAT
AGCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACGGG
ATCCGGCGCCTGTAGGAATTGGGCTTGCGCCGGTTTTAGTCCACCGAAGA
ACGTCTCAATCTGTGGACCACGGGGGCGGGGGCTCGCCATTGGTTCCCAC
GCAAGCAGACGCGAGCCAGGGCCCAGATACTTTGGATCCTTCAGCGGAGG
TGGGAGCGAAATCTCCAGCTTTGCTTGCCGTTGATGTTTCACCAAGCAGC
GCAAAAGGTGAGGCCAGGGGGTTCCAATTACCAGCAGCACCGAGTTTGCC
AATGCTTGGGAAACCTGCGCAAGAAGCGCCGTTCGATGCTGCTGCTGCTG
CTGCGGCGGCGGCGGCGGGAGGTGAGGCTCCCACTCCTGTTGTTGCCCCA
CCGGCGGCTGTGGCAGGGGGTACTGGAGTAGAGGTGGTCGGCCTCACTGC
CAGCCCGCAGGGAGAAGCCGGCGTTAGTGCGGCGGACGAAGCAGCTAACA
CAACGACGACGGTTTCAGCGGCGGTAAGCGAAGACCTAGCTTATGTTCAC
CGGGGCTCTGTCCTCCAGAGCTACGGCATCACAGGATCCGTTCTGGTGGC
GGCTTCCCACGGGGCCCGCGCTCGGTTGCGAGTCACGGACAGGCAGGGGC
ACATCGCAAACTTGACAGCCAACGCAGCAGTCGCGGCCGAAAACACCGCG
AGCAGCGTTCTGCCCACAAGAGAATACCTGTGCAAAGCTGGAGCGGTACA
GCCAGCTGGAGAGCCGCCCAAGTTTCTTCCGACCCTCATGTACCGGTGCT
CCCCTGCCGTGAAAGTGCTTCCAGTCAGAGTCACCTGCCGCCTGAGAAGT
GTGGGCAACAGTGTGCTCGTGTCGGTCCAAGTGATCGCCAACCCCCAGCT
TTCGCAGCCCCTCGGCGGTGTGTCGGTGCTGGTCAACTTGCCGTTTTCGC
CTCGAAATGAAGAGGGGACACCGACCCCCCGAACGTATCCGCAACACATA
CTCCCAAGCACGAACAAGGCACTTCGCAAGTGCCCGTCATGCAACCAGAT
TTCATCGACGAAAACTTGATAGCACAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCGACGGGATCCGGCGCCTGTAGGAATTGGGCTTGCGC
CGGTTTTAGTCCACCGAAGAACGTCTCAATCTGTGGACCACGGGGGCGGG
GGCTCGCCATTGGTTCCCACGCAAGCAGACGCGAGCCAGGGCCCAGATAC
TTTGGATCCTTCAGCGGAGGTGGGAGCGAAATCTCCAGCTTTGCTTGCCG
TTGATGTTTCACCAAGCAGCGCAAAAGGTGAGGCCAGGGGGTTCCAATTA
CCAGCAGCACCGAGTTTGCCAATGCTTGGGAAACCTGCGCAAGAAGCGCC
GTTCGATGCTGCTGCTGCTGCTGCGGCGGCGGCGGCGGGAGGTGAGGCTC
CCACTCCTGTTGTTGCCCCACCGGCGGCTGTGGCAGGGGGTACTGGAGTA
GAGGTGGTCGGCCTCACTGCCAGCCCGCAGGGAGAAGCCGGCGTTAGTGC
GGCGGACGAAGCAGCTAACACAACGACGACGGTTTCAGCGGCGGTAAGCG
AAGACCTAGCTTATGTTCACCGGGGCTCTGTCCTCCAGAGCTACGGCATC
ACAGGATCCGTTCTGGTGGCGGCTTCCCACGGGGCCCGCGCTCGGTTGCG
AGTCACGGACAGGCAGGGGCACATCGCAAACTTGACAGCCAACGCAGCAG
TCGCGGCCGAAAACACCGCGAGCAGCGTTCTGCCCACAAGAGAATACCTG
TGCAAAGCTGGAGCGGTACAGCCAGCTGGAGAGCCGCCCAAGTTTCTTCC
GACCCTCATGTACCGGTGCTCCCCTGCCGTGAAAGTGCTTCCAGTCAGAG
TCACCTGCCGCCTGAGAAGTGTGGGCAACAGTGTGCTCGTGTCGGTCCAA
GTGATCGCCAACCCCCAGCTTTCGCAGCCCCTCGGCGGTGTGTCGGTGCT
GGTCAACTTGCCGTTTTCGCCTCGAAATGAAGAGGGCGACGTAAAGTCTG
AACCTCCAGCGACGTTGAAGGCGGATCGCAGGATGCTGGAGTGGGCGCTA
CCGTTGAAAATTAAGCCTGGGGGCAAGCTGGTCGCGCAAGCGCGGTTGAG
CGTAGACGATGCGCAGGTGCGGTTGGCGGCCATTCCCCAAACCGCCCCGG
CCATGGTGAGGTGCCATTTGTTGGATTCTACGTTCTCATCTGTTGAGCTC
GAGATGACGGCGACAGCAGAGGAAGGAGAGCAGAACGTCCCCGGGAAAGT
CGTGAAGCGATGTCGGGTCCAGTGCAAGCAGCAGGGATAAGGCGACGTAA
AGTCTGAACCTCCAGCGACGTTGAAGGCGGATCGCAGGATGCTGGAGTGG
GCGCTACCGTTGAAAATTAAGCCTGGGGGCAAGCTGGTCGCGCAAGCGCG
GTTGAGCGTAGACGATGCGCAGGTGCGGTTGGCGGCCATTCCCCAAACCG
CCCCGGCCATGGTGAGGTGCCATTTGTTGGATTCTACGTTCTCATCTGTT
GAGCTCGAGATGACGGCGACAGCAGAGGAAGGAGAGCAGAACGTCCCCGG
GAAAGTCGTGAAGCGATGTCGGGTCCAGTGCAAGCAGCAGGGATAA
back to top