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Homology
BLAST of mRNA_L-elsbetiae_contig580.14229.1 vs. uniprot
Match: D7FW37_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW37_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 2.070e-20 Identity = 55/97 (56.70%), Postives = 65/97 (67.01%), Query Frame = 1
Query: 1 LSQTGAGPMVCNPRRRGGINYAADSAEARWAAEAAAEACRQETA--KADRREAEVGAEMLRMMKMWSFKEGQGAPAVAGGANGHGEANAGQQAVAAQ 285
+ Q G P+ NPRRRGGINYAADSAEA+WAA AAA+ CR++T + +EAEVGAEMLRMMKMWSF NG EA+AGQ+A Q
Sbjct: 6 MQQFGEAPVFVNPRRRGGINYAADSAEAKWAAGAAAQPCREDTRGRMSVDQEAEVGAEMLRMMKMWSF-------------NGGAEAHAGQEAPVGQ 89
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-01_003230.1 |
Exons | 2 |
Model size | 479 |
Cds size | 270 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816623.0809104-UTR-L-elsbetiae_contig580:5109..5133 | 1622816623.0809104-UTR-L-elsbetiae_contig580:5109..5133 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig580 5110..5133 + |
1691683692.3306322-UTR-L-elsbetiae_contig580:5109..5133 | 1691683692.3306322-UTR-L-elsbetiae_contig580:5109..5133 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig580 5110..5133 + |
1622816623.1167758-UTR-L-elsbetiae_contig580:5969..6154 | 1622816623.1167758-UTR-L-elsbetiae_contig580:5969..6154 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig580 5970..6154 + |
1691683692.3746886-UTR-L-elsbetiae_contig580:5969..6154 | 1691683692.3746886-UTR-L-elsbetiae_contig580:5969..6154 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig580 5970..6154 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816623.0941179-CDS-L-elsbetiae_contig580:5133..5263 | 1622816623.0941179-CDS-L-elsbetiae_contig580:5133..5263 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig580 5134..5263 + |
1691683692.3450117-CDS-L-elsbetiae_contig580:5133..5263 | 1691683692.3450117-CDS-L-elsbetiae_contig580:5133..5263 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig580 5134..5263 + |
1622816623.1051493-CDS-L-elsbetiae_contig580:5829..5969 | 1622816623.1051493-CDS-L-elsbetiae_contig580:5829..5969 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig580 5830..5969 + |
1691683692.355527-CDS-L-elsbetiae_contig580:5829..5969 | 1691683692.355527-CDS-L-elsbetiae_contig580:5829..5969 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig580 5830..5969 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig580.14229.1 >prot_L-elsbetiae_contig580.14229.1 ID=prot_L-elsbetiae_contig580.14229.1|Name=mRNA_L-elsbetiae_contig580.14229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
MVCNPRRRGGINYAADSAEARWAAEAAAEACRQETAKADRREAEVGAEML RMMKMWSFKEGQGAPAVAGGANGHGEANAGQQAVAAQLH* back to topmRNA from alignment at L-elsbetiae_contig580:5110..6154+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig580.14229.1 ID=mRNA_L-elsbetiae_contig580.14229.1|Name=mRNA_L-elsbetiae_contig580.14229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1045bp|location=Sequence derived from alignment at L-elsbetiae_contig580:5110..6154+ (Laminarionema elsbetiae ELsaHSoW15) TTGTCACAGACTGGCGCGGGACCTATGGTTTGCAACCCTCGACGAAGGGG
GGGGATAAACTACGCGGCAGACTCAGCAGAGGCTAGGTGGGCGGCCGAGG
CGGCGGCTGAGGCATGCCGGCAAGAGACAGCAAAGGCCGACCGCCGAGAA
GCAGGTCAGTCGAAATGGTCAAGTACACCACCAACGGATCGAACGGGATC
CAGGAAGAGAGAGTGACCGCCGCGTACATAGTGAAAATGTGGCCGCCCCC
ACCAAACCTGCTTATACCCCTCGCCTCAATCATCCGCGCCTACTACCACG
CCACAACCAACGTAGAGCCGGAGAAGTACACACGAAACGCCGCGAATGGC
CGTCTCCTCTTTGGGGGTTGTTGTTGTTGTTGCTGCCCAGACTACGTAAC
AAAAAAATCTCCCCTAACTCGATTATTTTGGTGGGTGCTACATACAACAG
CGTAGCCCCGACAGCAGTCAGCTACATTTCATGTAACACAGCTTGTAGTC
CGAACTAATTCAATGACGATACTGTTTCAAACGAAGTTACGATAATGTTT
CAAACGAAGTTGGAGACGAGAGATCTGTAGGCGAATAACAGAGTGCCGTT
GTTTTCCTAGACGTGACTCATGCACACCCTTCCCCGAAAGCTTAGATCGC
ATGTGAGATCTCTAACCCAGGTGCACCCACTCCTCATATTCGGCCGTTGT
TTCGCCTTTTCATTACGCAGAGGTAGGCGCAGAAATGCTGCGAATGATGA
AAATGTGGTCGTTCAAGGAGGGTCAGGGGGCCCCAGCGGTTGCTGGAGGT
GCTAACGGACACGGCGAAGCAAACGCTGGCCAACAAGCGGTTGCGGCCCA
GTTACATTGAGCTTCAAATTCGAGGCGTTTTACAACTTTGGCCGAGCGAG
AACTAGGCTTGGCAAGAGGTAGTTCTGGACGGGTTTTCATGGGAGTTGGG
AGAGATCATGTCATAATAAGGTTTTTATATCATTCTTGGGTGGTTCTGTA
AATATCAACAATCGGTGGCAACGCCACTTGGATTTCCCCTCTAAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig580:5110..6154+ >mRNA_L-elsbetiae_contig580.14229.1 ID=mRNA_L-elsbetiae_contig580.14229.1|Name=mRNA_L-elsbetiae_contig580.14229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig580:5110..6154+ (Laminarionema elsbetiae ELsaHSoW15) ATGGTTTGCAACCCTCGACGAAGGGGGGGGATAAACTACGCGGCAGACTC AGCAGAGGCTAGGTGGGCGGCCGAGGCGGCGGCTGAGGCATGCCGGCAAG AGACAGCAAAGGCCGACCGCCGAGAAGCAGATGGTTTGCAACCCTCGACG AAGGGGGGGGATAAACTACGCGGCAGACTCAGCAGAGGCTAGGTGGGCGG CCGAGGCGGCGGCTGAGGCATGCCGGCAAGAGACAGCAAAGGCCGACCGC CGAGAAGCAGAGGTAGGCGCAGAAATGCTGCGAATGATGAAAATGTGGTC GTTCAAGGAGGGTCAGGGGGCCCCAGCGGTTGCTGGAGGTGCTAACGGAC ACGGCGAAGCAAACGCTGGCCAACAAGCGGTTGCGGCCCAGTTACATTGA AGGTAGGCGCAGAAATGCTGCGAATGATGAAAATGTGGTCGTTCAAGGAG GGTCAGGGGGCCCCAGCGGTTGCTGGAGGTGCTAACGGACACGGCGAAGC AAACGCTGGCCAACAAGCGGTTGCGGCCCAGTTACATTGA back to top
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